diff --git a/scatac/monocle_to_anndata.R b/scatac/monocle_to_anndata.R index a5b40f6..0f2b245 100644 --- a/scatac/monocle_to_anndata.R +++ b/scatac/monocle_to_anndata.R @@ -1,10 +1,10 @@ nb_rna <- readRDS( - file = "/media/AGFORTELNY/PROJECTS/Neuroblastoma/analysis/wolfgang/data_generated/rna_decontaminated.rds") + file = "data_generated/rna_decontaminated.rds") nb_rna_meta <- readRDS( - file = "/media/AGFORTELNY/PROJECTS/Neuroblastoma/analysis/wolfgang/data_generated/metadata.rds") + file = "data_generated/metadata.rds") # rna_integrated_monocle.rds # sce <- SingleCellExperiment(list(counts=counts))