From 3c7d68aa12f8065afea87fd6f53a4c4980f90927 Mon Sep 17 00:00:00 2001
From: Wolfgang Esser-Skala <30843618+skafdasschaf@users.noreply.github.com>
Date: Thu, 9 Mar 2023 15:31:18 +0100
Subject: [PATCH] adjusts input file paths

---
 scatac/monocle_to_anndata.R | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/scatac/monocle_to_anndata.R b/scatac/monocle_to_anndata.R
index a5b40f6..0f2b245 100644
--- a/scatac/monocle_to_anndata.R
+++ b/scatac/monocle_to_anndata.R
@@ -1,10 +1,10 @@
 
 nb_rna <- 
   readRDS(
-    file = "/media/AGFORTELNY/PROJECTS/Neuroblastoma/analysis/wolfgang/data_generated/rna_decontaminated.rds")
+    file = "data_generated/rna_decontaminated.rds")
 nb_rna_meta <- 
   readRDS(
-    file = "/media/AGFORTELNY/PROJECTS/Neuroblastoma/analysis/wolfgang/data_generated/metadata.rds")
+    file = "data_generated/metadata.rds")
 
 # rna_integrated_monocle.rds
 # sce <- SingleCellExperiment(list(counts=counts))