scTrace/environment.yaml at main · czythu/scTrace · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
name: scTrace_env
channels:
  - defaults
dependencies:
  - anyio=4.2.0=py39haa95532_0
  - argon2-cffi=21.3.0=pyhd3eb1b0_0
  - argon2-cffi-bindings=21.2.0=py39h2bbff1b_0
  - asttokens=2.0.5=pyhd3eb1b0_0
  - async-lru=2.0.4=py39haa95532_0
  - attrs=23.1.0=py39haa95532_0
  - babel=2.11.0=py39haa95532_0
  - backcall=0.2.0=pyhd3eb1b0_0
  - beautifulsoup4=4.12.3=py39haa95532_0
  - bleach=4.1.0=pyhd3eb1b0_0
  - brotli-python=1.0.9=py39hd77b12b_8
  - ca-certificates=2024.7.2=haa95532_0
  - certifi=2024.8.30=py39haa95532_0
  - cffi=1.16.0=py39h2bbff1b_1
  - charset-normalizer=3.3.2=pyhd3eb1b0_0
  - colorama=0.4.6=py39haa95532_0
  - comm=0.2.1=py39haa95532_0
  - debugpy=1.6.7=py39hd77b12b_0
  - decorator=5.1.1=pyhd3eb1b0_0
  - defusedxml=0.7.1=pyhd3eb1b0_0
  - exceptiongroup=1.2.0=py39haa95532_0
  - executing=0.8.3=pyhd3eb1b0_0
  - h11=0.14.0=py39haa95532_0
  - httpcore=1.0.2=py39haa95532_0
  - httpx=0.27.0=py39haa95532_0
  - idna=3.7=py39haa95532_0
  - importlib-metadata=7.0.1=py39haa95532_0
  - importlib_metadata=7.0.1=hd3eb1b0_0
  - ipykernel=6.28.0=py39haa95532_0
  - ipython=8.15.0=py39haa95532_0
  - jedi=0.19.1=py39haa95532_0
  - jinja2=3.1.4=py39haa95532_0
  - json5=0.9.6=pyhd3eb1b0_0
  - jsonschema=4.19.2=py39haa95532_0
  - jsonschema-specifications=2023.7.1=py39haa95532_0
  - jupyter-lsp=2.2.0=py39haa95532_0
  - jupyter_client=8.6.0=py39haa95532_0
  - jupyter_core=5.7.2=py39haa95532_0
  - jupyter_events=0.10.0=py39haa95532_0
  - jupyter_server=2.14.1=py39haa95532_0
  - jupyter_server_terminals=0.4.4=py39haa95532_1
  - jupyterlab=4.2.5=py39haa95532_0
  - jupyterlab_pygments=0.1.2=py_0
  - jupyterlab_server=2.27.3=py39haa95532_0
  - libsodium=1.0.18=h62dcd97_0
  - markupsafe=2.1.3=py39h2bbff1b_0
  - matplotlib-inline=0.1.6=py39haa95532_0
  - mistune=2.0.4=py39haa95532_0
  - nbclient=0.8.0=py39haa95532_0
  - nbconvert=7.10.0=py39haa95532_0
  - nbformat=5.9.2=py39haa95532_0
  - nest-asyncio=1.6.0=py39haa95532_0
  - notebook=7.2.2=py39haa95532_0
  - notebook-shim=0.2.3=py39haa95532_0
  - openssl=3.0.15=h827c3e9_0
  - overrides=7.4.0=py39haa95532_0
  - packaging=24.1=py39haa95532_0
  - pandocfilters=1.5.0=pyhd3eb1b0_0
  - parso=0.8.3=pyhd3eb1b0_0
  - pickleshare=0.7.5=pyhd3eb1b0_1003
  - pip=24.2=py39haa95532_0
  - platformdirs=3.10.0=py39haa95532_0
  - prometheus_client=0.14.1=py39haa95532_0
  - prompt-toolkit=3.0.43=py39haa95532_0
  - psutil=5.9.0=py39h2bbff1b_0
  - pure_eval=0.2.2=pyhd3eb1b0_0
  - pycparser=2.21=pyhd3eb1b0_0
  - pygments=2.15.1=py39haa95532_1
  - pysocks=1.7.1=py39haa95532_0
  - python=3.9.19=h1aa4202_1
  - python-dateutil=2.9.0post0=py39haa95532_2
  - python-fastjsonschema=2.16.2=py39haa95532_0
  - python-json-logger=2.0.7=py39haa95532_0
  - pytz=2024.1=py39haa95532_0
  - pywin32=305=py39h2bbff1b_0
  - pywinpty=2.0.10=py39h5da7b33_0
  - pyyaml=6.0.1=py39h2bbff1b_0
  - pyzmq=25.1.2=py39hd77b12b_0
  - referencing=0.30.2=py39haa95532_0
  - requests=2.32.3=py39haa95532_0
  - rfc3339-validator=0.1.4=py39haa95532_0
  - rfc3986-validator=0.1.1=py39haa95532_0
  - rpds-py=0.10.6=py39h062c2fa_0
  - send2trash=1.8.2=py39haa95532_0
  - setuptools=72.1.0=py39haa95532_0
  - six=1.16.0=pyhd3eb1b0_1
  - sniffio=1.3.0=py39haa95532_0
  - soupsieve=2.5=py39haa95532_0
  - sqlite=3.45.3=h2bbff1b_0
  - stack_data=0.2.0=pyhd3eb1b0_0
  - terminado=0.17.1=py39haa95532_0
  - tinycss2=1.2.1=py39haa95532_0
  - tomli=2.0.1=py39haa95532_0
  - tornado=6.4.1=py39h827c3e9_0
  - traitlets=5.14.3=py39haa95532_0
  - typing-extensions=4.11.0=py39haa95532_0
  - typing_extensions=4.11.0=py39haa95532_0
  - urllib3=2.2.2=py39haa95532_0
  - vc=14.40=h2eaa2aa_0
  - vs2015_runtime=14.40.33807=h98bb1dd_0
  - wcwidth=0.2.5=pyhd3eb1b0_0
  - webencodings=0.5.1=py39haa95532_1
  - websocket-client=1.8.0=py39haa95532_0
  - wheel=0.43.0=py39haa95532_0
  - win_inet_pton=1.1.0=py39haa95532_0
  - winpty=0.4.3=4
  - yaml=0.2.5=he774522_0
  - zeromq=4.3.5=hd77b12b_0
  - zipp=3.17.0=py39haa95532_0
  - pip:
      - anndata==0.10.9
      - array-api-compat==1.8
      - contourpy==1.3.0
      - cycler==0.12.1
      - filelock==3.15.4
      - fonttools==4.53.1
      - fsspec==2024.6.1
      - gensim==4.3.3
      - get-annotations==0.1.2
      - h5py==3.11.0
      - igraph==0.11.6
      - importlib-resources==6.4.4
      - joblib==1.4.2
      - kiwisolver==1.4.6
      - legacy-api-wrap==1.4
      - leidenalg==0.10.2
      - llvmlite==0.43.0
      - matplotlib==3.9.2
      - mpmath==1.3.0
      - natsort==8.4.0
      - networkx==3.2.1
      - node2vec==0.5.0
      - numba==0.60.0
      - numpy==1.26.4
      - opt-einsum==3.3.0
      - pandas==2.2.2
      - patsy==0.5.6
      - pillow==10.4.0
      - pot==0.9.4
      - pynndescent==0.5.13
      - pyparsing==3.1.4
      - pyro-api==0.1.2
      - pyro-ppl==1.9.1
      - scanpy==1.10.2
      - scikit-learn==1.5.1
      - scipy==1.13.1
      - scstatedynamics==0.0.20
      - seaborn==0.13.2
      - session-info==1.0.0
      - smart-open==7.0.4
      - statsmodels==0.14.2
      - stdlib-list==0.10.0
      - sympy==1.13.2
      - texttable==1.7.0
      - threadpoolctl==3.5.0
      - torch==2.4.0
      - tqdm==4.66.5
      - tzdata==2024.1
      - umap-learn==0.5.6
      - wrapt==1.16.0