scTrace/setup.py at main · czythu/scTrace · GitHub

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# Copyright (C) 2024 Zeyu Chen, G-Lab, Tsinghua University

from setuptools import setup, find_packages
import os

os.chdir(os.path.dirname(os.path.abspath(__file__)))
print(os.getcwd())

with open("README.md", "r") as fh:
	description = fh.read()


setup(
	name="scTrace",
	version="0.1.6",
	author="Zeyu Chen",
	author_email="chenzy22@mails.tsinghua.edu.cn",
    packages=find_packages(),
	description="scTrace+: enhance the cell fate inference by integrating the lineage-tracing and multi-faceted transcriptomic similarity information",
	long_description=description,
	long_description_content_type="text/markdown",
	url="https://github.com/czythu/scTrace",
	license='MIT',
	python_requires='>=3.7',
	install_requires=[
		"numpy",
    	"pandas",
    	"scipy",
    	"scikit-learn",
    	"seaborn",
    	"matplotlib",
    	"scanpy",
    	"leidenalg",
    	"pyro-ppl",
    	"POT",
		"node2vec",
		"scStateDynamics"
	]
)