Road to Bioc

[federicomarini]

Here's a list of items that likely will need to be addressed if we want annoFuse included in Bioconductor

• expand the vignettes (e.g. nice ideas could come from the current doc folder)

• roxygen to fully document the package and precisely specifying importFrom commands

• examples to showcase the usage of functions

• a NEWS.md file would not hurt?

• specification of some biocViews to define the "landing area"

• link to some potential output files to use as showcasing? (could be then plugged in e.g. into the shiny app)

• version number to be adjusted (0.99.0 for submission

• related to the examples - it is a nice thing if we had unit tests, would make the code pretty robust to the nasty edge cases 😃

We could split them up to single issues for easier tracking, if desired!
Federico

[federicomarini]

A first draft of the news can be found in federicomarini@c5c0fe4

[kgaonkar6]

Will github links work for output formats work? Like https://github.com/AlexsLemonade/OpenPBTA-analysis/blob/master/analyses/fusion_filtering/results/pbta-fusion-putative-oncogenic.tsv

[federicomarini]

biocViews suggestions are in federicomarini@9595fff, see if you think some might be still missing

[federicomarini]

Will github links work for output formats work

You mean when you enter them when calling the app? Gotta check that, not sure it will