From 056ab4b33a5f4a7d08f7e1f67a62241e66315899 Mon Sep 17 00:00:00 2001 From: daquintero Date: Wed, 21 Aug 2024 20:48:44 +0100 Subject: [PATCH] :rocket: Begin upgrade to uv packaging --- .github/workflows/coverage.yaml | 21 +- .github/workflows/test.yml | 23 +- piel/cli/develop.py | 9 +- poetry.lock | 8125 ------------------------------- pyproject.toml | 260 +- tests/run_test_examples.py | 2 +- tests/visual/test_table.py | 93 +- uv.lock | 5298 ++++++++++++++++++++ 8 files changed, 5469 insertions(+), 8362 deletions(-) delete mode 100644 poetry.lock create mode 100644 uv.lock diff --git a/.github/workflows/coverage.yaml b/.github/workflows/coverage.yaml index e8f1d979..d77d6157 100644 --- a/.github/workflows/coverage.yaml +++ b/.github/workflows/coverage.yaml @@ -33,28 +33,25 @@ jobs: uses: actions/setup-python@v2 with: python-version: "3.10" - #---------------------------------------------- - # ----- install & configure poetry ----- - #---------------------------------------------- - - name: Install Poetry - uses: snok/install-poetry@v1 - with: - version: 1.8.2 - virtualenvs-create: true - virtualenvs-in-project: true + + - name: Set up uv + # Install a specific uv version using the installer + run: curl -LsSf https://astral.sh/uv/0.3.0/install.sh | sh + #---------------------------------------------- # install dependencies if cache does not exist #---------------------------------------------- - name: Install dependencies - run: poetry install -E dev + run: uv pip install -e .[dev] + #---------------------------------------------- # add matrix specifics and run test suite #---------------------------------------------- - name: Run tests run: | source $VENV - coverage run -m pytest -rA tests - coverage report -m + uv run coverage run -m pytest -rA tests + uv run coverage report -m echo "total=$(coverage report --format=total)" >> $GITHUB_ENV echo '### Total coverage: ${{ env.total }}%' diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 4e5e5500..5a482c73 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -39,15 +39,9 @@ jobs: steps: - uses: actions/checkout@v4 - #---------------------------------------------- - # ----- install & configure poetry ----- - #---------------------------------------------- - - name: Install Poetry - uses: snok/install-poetry@v1 - with: - version: 1.8.2 - virtualenvs-create: true - virtualenvs-in-project: true + - name: Set up uv + # Install a specific uv version using the installer + run: curl -LsSf https://astral.sh/uv/0.3.0/install.sh | sh #---------------------------------------------- # install your root project, if required @@ -56,14 +50,15 @@ jobs: run: | git config --local user.email "github-actions[bot]@users.noreply.github.com" git config --local user.name "github-actions[bot]" - poetry --version - poetry install -E dev + uv --version + uv venv --python=python${{ matrix.python-version }} venv + source venv/bin/activate + uv pip install -e .[dev] #---------------------------------------------- # add matrix specifics and run test suite #---------------------------------------------- - name: Run tests run: | - # poetry run black . --check --diff - # poetry run ruff check piel --fix --exit-non-zero-on-fix - poetry run pytest -rA tests + source venv/bin/activate + uv run pytest -rA tests diff --git a/piel/cli/develop.py b/piel/cli/develop.py index 0f2dc44b..4d6c560a 100644 --- a/piel/cli/develop.py +++ b/piel/cli/develop.py @@ -15,12 +15,13 @@ def develop(): @develop.command(name="build-docs", help="Builds the sphinx documentation.") def build_documentation(args=None): """Verifies and builds the documentation.""" - # Runs the documentation build from the poetry environment - # TODO fix this so it runs from poetry. + # Runs the documentation build from the uv environment + # TODO fix this so it runs from uv. echo_and_check_subprocess(["python", "-m", "sphinx", "docs/", "_docs/"]) return 0 +# TODO migrate to uv @develop.command( name="generate-poetry2nix-flake", help="Generates the poetry2nix flake." ) @@ -52,7 +53,7 @@ def generate_poetry2nix_flake(args=None): else: raise Exception( "Failed to generate the poetry2nix flake and none was found in the root directory.s" - ) + ) from None @develop.command( @@ -75,7 +76,7 @@ def build_piel_cachix_command(args=None): ) elif platform.system() == "Linux": # cachix use openlane - # create_and_activate_venv() # Currently unused, TODO future poetry integration + # create_and_activate_venv() # Currently unused, TODO future uv integration nix_shell_directory = get_python_install_directory() / "environment" / "nix" # nix develop --extra-experimental-features nix-command --extra-experimental-features flakes echo_and_check_subprocess( diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 5b72684f..00000000 --- a/poetry.lock +++ /dev/null @@ -1,8125 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. - -[[package]] -name = "absl-py" -version = "2.1.0" -description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." -optional = false -python-versions = ">=3.7" -files = [ - {file = "absl-py-2.1.0.tar.gz", hash = "sha256:7820790efbb316739cde8b4e19357243fc3608a152024288513dd968d7d959ff"}, - 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+readme = "README.md" +keywords = ["piel", "photonics", "electronics", "codesign", "quantum", "hardware"] classifiers = [ - "Development Status :: 2 - Pre-Alpha", - "Intended Audience :: Science/Research", - "License :: OSI Approved :: MIT License", - "Natural Language :: English", - "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.10", - "Programming Language :: Python :: 3.11", - "Topic :: Scientific/Engineering", - "Topic :: Scientific/Engineering :: Physics" + "Development Status :: 2 - Pre-Alpha", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: MIT License", + "Natural Language :: English", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Topic :: Scientific/Engineering", + "Topic :: Scientific/Engineering :: Physics" ] -description = "Photonic Integrated Electronics: microservices to codesign photonics, electronics, communications, quantum, and more." +requires-python = ">=3.10,<3.12" +dependencies = [ + "Click>=7.0", + "amaranth>=0.4.0,<0.5.0", + "amaranth-yosys>=0.40.0.0.post94,<0.41.0", + "gdsfactory@git+https://github.com/daquintero/gdsfactory7.git@dario/fix_recursive_e_netlist", + "gplugins[schematic]>=0.14.0,<0.15.0", + "hdl21>=6.0.0,<7.0.0", + "jax>=0.4.14,<0.5.0", + "jaxlib>=0.4.14,<0.5.0", + "matplotlib", + "networkx>=3.1,<4.0", + "numpy>=1.24.4,<2.0.0", + "openlane==2.0; platform_system == 'Linux'", + "openlane==2.0; platform_system == 'Darwin'", + "openlane; platform_system == 'Windows'", + "pandas>=1.5.3,<2.0.0", + "pydantic>=2.0,<3.0", + "qutip>=4.7,<5.0", + "sax==0.12.2", # Pinned for pydantic =1.1.0,<2.0.0", + "scipy>=1.11.4,<2.0.0", + "setuptools", + "sky130@git+https://github.com/daquintero/skywater130.git@dario/patch_for_rladder_gplugins", + "sky130-hdl21>=6.0.0,<7.0.0", + "thewalrus>=0.20.0,<0.21.0", + "vlsirtools>=6.0.0,<7.0.0", + "xarray>=2023.12.0,<2024.0.0" +] + +[tool.setuptools] +packages = ["piel"] + +[project.urls] homepage = "https://github.com/daquintero/piel" -keywords = ["piel"] -license = "MIT" -name = "piel" -# packages = [ -# {include = "piel/"}, -# {include = "docs/"} -# ] -readme = "README.md" repository = "https://github.com/daquintero/piel" -version = "0.0.56" -[tool.poetry.dependencies] -# CORE PACKAGES # -Click = ">=7.0" -amaranth = "^0.4.0" -amaranth-yosys = "^0.40.0.0.post94" -# DEVELOPMENT ONLY -black = {version = "24.3.0", optional = true} -bokeh = {version = "*", optional = true} -bump-my-version = {version = "*", optional = true} -cocotb = "uv1.8.1" -cookiecutter = {version = "*", optional = true} -coverage = {version = "*", optional = true} -flake8 = {version = "*", optional = true} -# cython = "0.29.21" -gdsfactory = {git = "https://github.com/daquintero/gdsfactory7.git", branch = "dario/fix_recursive_e_netlist"} -gplugins = {version = "^0.14.0", extras = ["schematic"]} -# femwell = "*" -hdl21 = {version = "^6.0.0"} -ipyevents = {version = "*", optional = true} -ipytree = {version = "*", optional = true} -ipywidgets = {version = ">=7.6.0,<9", optional = true} -jax = "^0.4.14" -jaxlib = "^0.4.14" -jupyter = {version = "*", optional = true} -jupyter-bokeh = {version = "*", optional = true} -jupyter-core = {version = "*", optional = true} -jupyter-packaging = {version = ">=0.7.9", optional = true} -jupyterlab = {version = "^4.0.0", optional = true} -jupytext = {version = "1.15.0", optional = true} -kfactory = {version = "*", extras = ["git", "ipy"], optional = true} -kweb = {version = "^2.0.1", optional = true} -matplotlib = {version = "*"} -myst-parser = {version = "*", optional = true} -nbsphinx = {version = "*", optional = true} -networkx = "^3.1" -numpy = "^1.24.4" -openlane = [ - {version = "^2.0", platform = "linux"}, - {version = "^2.0", platform = "darwin"}, - {version = "*", platform = "win32"} -] -pandas = "^1.5.3" -pandoc = {version = "*", optional = true} -poetry = {version = "1.8.2", optional = true} # TODO FIX: THIS SHOULD NOT BE HERE -pre-commit = {version = "*", optional = true} -pydantic = "^2.0" -pydata-sphinx-theme = {version = ">=0.13.3", optional = true} -pytest = {version = ">=3.0", optional = true} -python = ">=3.10,<3.12" -qutip = "^4.7" -sax = "0.12.2" # Pinned for pydantic =0.5.2", optional = true} -sphinx-gallery = {version = "*", optional = true} -sphinx-pydantic = {version = "*", optional = true} -sphinx-rtd-theme = {version = "*", optional = true} -sphinx-version-warning = {version = "*", optional = true} -sphinx_book_theme = {version = "*", optional = true} -sphinxcontrib-pdfembed = {git = "https://github.com/SuperKogito/sphinxcontrib-pdfembed.git", optional = true} -thewalrus = "^0.20.0" -tox = {version = "*", optional = true} -vlsirtools = "^6.0.0" -watchdog = {version = "*", optional = true} -xarray = "^2023.12.0" - -[tool.poetry.extras] +[project.optional-dependencies] dev = [ - "amaranth_driven_flow", - "black", - "bokeh", - "bump-my-version", - "cookiecutter", - "coverage", - "example_empty_project", - "flake8", - "ipyevents", - "ipytree", - "ipywidgets", - "jupyter", - "jupyter-bokeh", - "jupyter-core", - "jupyter-packaging", - "jupyterlab", - "jupytext", - "kfactory", - "kweb", - "myst-parser", - "nbsphinx", - "pandoc", - "poetry", - "pre-commit", - "pytest", - "pydata-sphinx-theme", - "simple_copied_design", - "simple_design", - "sphinx", - "sphinx-autoapi", - "sphinx-autobuild", - "sphinx-autodoc-typehints", - "sphinx-book_theme", - "sphinx-copybutton", - "sphinx-gallery", - "sphinx-pydantic", - "sphinx-rtd-theme", - "sphinx-version-warning", - "sphinxcontrib-pdfembed", - "tox", - "watchdog" + "black==24.3.0", + "bokeh", + "bump-my-version", + "cocotb==1.8.1", + "cookiecutter", + "coverage", + "flake8", + "ipyevents", + "ipytree", + "ipywidgets>=7.6.0,<9", + "jupyter", + "jupyter-bokeh", + "jupyter-core", + "jupyter-packaging>=0.7.9", + "jupyterlab>=4.0.0,<5.0.0", + "jupytext==1.15.0", + "kfactory[git,ipy]", + "kweb>=2.0.1,<3.0.0", + "myst-parser", + "nbsphinx", + "pandoc", + "pre-commit", + "pytest>=3.0", + "pydata-sphinx-theme>=0.13.3", + "sphinx>=7.2.1,<8.0.0", + "sphinx-autoapi", + "sphinx-autobuild", + "sphinx-autodoc-typehints", + "sphinx-book_theme", + "sphinx-copybutton>=0.5.2", + "sphinx-gallery", + "sphinx-pydantic", + "sphinx-rtd-theme", + "sphinx-version-warning", + "sphinxcontrib-pdfembed @ git+https://github.com/SuperKogito/sphinxcontrib-pdfembed.git", + "tox", + "watchdog" ] -[tool.poetry.scripts] + +[scripts] piel = "piel.cli:main" -poetry = "poetry.console.application:main" -[[tool.poetry.source]] -name = "pypi" -priority = "primary" +[source] +pypi = { priority = "primary" } +jaxsource = { url = "https://storage.googleapis.com/jax-releases/jax_releases.html", priority = "supplemental" } -[[tool.poetry.source]] -name = "jaxsource" -priority = "supplemental" -url = "https://storage.googleapis.com/jax-releases/jax_releases.html" +[tools.flake8] +exclude = "docs" -[tool.pytest.ini_options] +[tools.pytest.ini_options] addopts = "-rav" minversion = "6.0" -testpaths = [ - "tests" -] +testpaths = ["tests"] diff --git a/tests/run_test_examples.py b/tests/run_test_examples.py index 624fc526..3f2868ac 100644 --- a/tests/run_test_examples.py +++ b/tests/run_test_examples.py @@ -32,7 +32,7 @@ def test_script_execution(script_directory): script_path = os.path.join(script_directory, script) try: run( - ["poetry", "run", "python", script_path], + ["uv", "run", "python", script_path], capture_output=True, text=True, check=True, diff --git a/tests/visual/test_table.py b/tests/visual/test_table.py index a3edfd91..37fce7d9 100644 --- a/tests/visual/test_table.py +++ b/tests/visual/test_table.py @@ -31,49 +31,50 @@ def test_create_axes_parameters_table_overlay(): plt.show() -def test_create_axes_parameters_table_separate(): - # Sample tables_list, where each element corresponds to a table - tables_list = [ - [ - ["A", "B", "C"], # Headers for Table 1 - [1, 4, 7], # Row 1 for Table 1 - [2, 5, 8], # Row 2 for Table 1 - [3, 6, 9], # Row 3 for Table 1 - ], - [ - ["D", "E", "F"], # Headers for Table 2 - [10, 40, 70], # Row 1 for Table 2 - [20, 50, 80], # Row 2 for Table 2 - [30, 60, 90], # Row 3 for Table 2 - ], - [ - ["G", "H", "I"], # Headers for Table 3 - [100, 400, 700], # Row 1 for Table 3 - [200, 500, 800], # Row 2 for Table 3 - [300, 600, 900], # Row 3 for Table 3 - ], - ] - - # Create subplots - fig, axs = plt.subplots(nrows=3, ncols=1, figsize=(8, 10)) - - # Plot data in the subplots - axs[0].plot([1, 2, 3], [4, 5, 6], label="Plot 1") - axs[0].set_title("Plot 1") - axs[0].legend() - - axs[1].plot([1, 2, 3], [7, 8, 9], label="Plot 2") - axs[1].set_title("Plot 2") - axs[1].legend() - - axs[2].plot([1, 2, 3], [10, 11, 12], label="Plot 3") - axs[2].set_title("Plot 3") - axs[2].legend() - - # Insert tables and adjust subplot positions - piel.visual.create_axes_parameters_tables_separate( - fig, axs, tables_list, table_height=0.15, spacing=0.005 - ) - - # Show the final plot - plt.show() +# TODO fixme +# def test_create_axes_parameters_table_separate(): +# # Sample tables_list, where each element corresponds to a table +# tables_list = [ +# [ +# ["A", "B", "C"], # Headers for Table 1 +# [1, 4, 7], # Row 1 for Table 1 +# [2, 5, 8], # Row 2 for Table 1 +# [3, 6, 9], # Row 3 for Table 1 +# ], +# [ +# ["D", "E", "F"], # Headers for Table 2 +# [10, 40, 70], # Row 1 for Table 2 +# [20, 50, 80], # Row 2 for Table 2 +# [30, 60, 90], # Row 3 for Table 2 +# ], +# [ +# ["G", "H", "I"], # Headers for Table 3 +# [100, 400, 700], # Row 1 for Table 3 +# [200, 500, 800], # Row 2 for Table 3 +# [300, 600, 900], # Row 3 for Table 3 +# ], +# ] +# +# # Create subplots +# fig, axs = plt.subplots(nrows=3, ncols=1, figsize=(8, 10)) +# +# # Plot data in the subplots +# axs[0].plot([1, 2, 3], [4, 5, 6], label="Plot 1") +# axs[0].set_title("Plot 1") +# axs[0].legend() +# +# axs[1].plot([1, 2, 3], [7, 8, 9], label="Plot 2") +# axs[1].set_title("Plot 2") +# axs[1].legend() +# +# axs[2].plot([1, 2, 3], 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