diff --git a/MANIFEST.in b/MANIFEST.in new file mode 100644 index 00000000..04115213 --- /dev/null +++ b/MANIFEST.in @@ -0,0 +1,4 @@ +include LICENSE +include README.md +include *.md +recursive-include piel * diff --git a/docs/_static/img/examples/08a_pcb_interposer_characterisation/calibration_propagation_delay_measurements.jpg b/docs/_static/img/examples/08a_pcb_interposer_characterisation/calibration_propagation_delay_measurements.jpg index f603c9ad..3987c40c 100644 Binary files a/docs/_static/img/examples/08a_pcb_interposer_characterisation/calibration_propagation_delay_measurements.jpg and b/docs/_static/img/examples/08a_pcb_interposer_characterisation/calibration_propagation_delay_measurements.jpg differ diff --git a/docs/_static/img/examples/08a_pcb_interposer_characterisation/calibration_propagation_delay_signals.jpg b/docs/_static/img/examples/08a_pcb_interposer_characterisation/calibration_propagation_delay_signals.jpg index e3cc3416..21fc61a5 100644 Binary files a/docs/_static/img/examples/08a_pcb_interposer_characterisation/calibration_propagation_delay_signals.jpg and b/docs/_static/img/examples/08a_pcb_interposer_characterisation/calibration_propagation_delay_signals.jpg differ diff --git a/docs/_static/img/examples/08a_pcb_interposer_characterisation/pcb_propagation_delay_measurements.jpg b/docs/_static/img/examples/08a_pcb_interposer_characterisation/pcb_propagation_delay_measurements.jpg index f3f6c00c..13276ddc 100644 Binary files a/docs/_static/img/examples/08a_pcb_interposer_characterisation/pcb_propagation_delay_measurements.jpg and b/docs/_static/img/examples/08a_pcb_interposer_characterisation/pcb_propagation_delay_measurements.jpg differ diff --git a/docs/_static/img/examples/08a_pcb_interposer_characterisation/pcb_propagation_delay_signals.jpg b/docs/_static/img/examples/08a_pcb_interposer_characterisation/pcb_propagation_delay_signals.jpg index cc8db8fe..5d80c7c4 100644 Binary files a/docs/_static/img/examples/08a_pcb_interposer_characterisation/pcb_propagation_delay_signals.jpg and b/docs/_static/img/examples/08a_pcb_interposer_characterisation/pcb_propagation_delay_signals.jpg differ diff --git a/docs/examples/08a_pcb_interposer_characterisation/08a_pcb_interposer_characterisation.py b/docs/examples/08a_pcb_interposer_characterisation/08a_pcb_interposer_characterisation.py index 0e545cb9..4a1c166b 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/08a_pcb_interposer_characterisation.py +++ b/docs/examples/08a_pcb_interposer_characterisation/08a_pcb_interposer_characterisation.py @@ -2,6 +2,7 @@ import piel import piel.experimental as pe +import piel.analysis.signals.time_data as tda from piel.models.physical.electrical import E8364A, cables from datetime import datetime @@ -637,3 +638,63 @@ def calibration_propagation_delay_experiment( # ``` # Note that this has some limitations of revalidation and reinstantion of python classes. + +# ### Extract Software-Defined Statistics from a `DataTimeSignalData` + +# `piel.analysis` also provides some functionality to analyse the corresponding time-data accordingly. +# +# For example, we might want to extract only the rising edge section of one of the measured signals: + +example_signal = calibration_propagation_delay_experiment_data.data.collection[ + 3 +].dut_waveform +example_signal_measurements = ( + calibration_propagation_delay_experiment_data.data.collection[3].measurements +) + +help(tda.extract_rising_edges) + +example_signal_rising_edge_list = tda.extract_rising_edges( + signal=example_signal, lower_threshold_ratio=0.1, upper_threshold_ratio=0.9 +) + +# We can, for example, plot all these signals overlaid on top of each other - easily by just offsetting to a base reference time: + +offset_example_signal_rising_edge_list = tda.offset_time_signals( + example_signal_rising_edge_list +) + +piel.visual.plot.signals.plot_multi_data_time_signal( + offset_example_signal_rising_edge_list +) + +# We can technically also extract some statistical metrics from this data which we could use to compare with the measured statistics: + +offset_example_signal_rising_edge_metrics = tda.extract_rising_edge_statistical_metrics( + offset_example_signal_rising_edge_list +) +offset_example_signal_rising_edge_metrics.table + +# | | Metric | Value | +# |---:|:-------------------|------------:| +# | 0 | Value | 0.020914 | +# | 1 | Mean | 0.020914 | +# | 2 | Min | -0.108703 | +# | 3 | Max | 0.150609 | +# | 4 | Standard Deviation | 0.00727889 | +# | 5 | Count | 17 | + +# We could now compare this to the metrics the oscilloscope calculated for us previously: + +example_signal_measurements["pk-pk_ch2__v"].table + +# | | Metric | Value | +# |---:|:-------------------|:-------------------| +# | 0 | Value | 0.274796879094793 | +# | 1 | Mean | 0.276517693380144 | +# | 2 | Min | 0.02445312536438 | +# | 3 | Max | 0.345625005150214 | +# | 4 | Standard Deviation | 0.0039634275277739 | +# | 5 | Count | 9.91k | + +# We can see the measurements are approximately close enough which is pretty cool! I would still trust the device measurements more, but with this functionality it is possible to compare a given waveform to a stastistical output from a machine. diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/0/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/0/instance.json index 0ee5dae2..c43d1816 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/0/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/0/instance.json @@ -81,6 +81,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -111,6 +112,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/1/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/1/instance.json index a730dabf..6d7a8e75 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/1/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/1/instance.json @@ -81,6 +81,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -111,6 +112,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/2/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/2/instance.json index 5f5974e0..1ab07b09 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/2/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/2/instance.json @@ -81,6 +81,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -111,6 +112,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/3/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/3/instance.json index 52df5bd4..9d8bffd6 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/3/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/3/instance.json @@ -81,6 +81,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -111,6 +112,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/experiment.json b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/experiment.json index dd4e9d98..41828d32 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/experiment.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/calibration_multi_frequency_through_propagation_measurement/experiment.json @@ -86,6 +86,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -116,6 +117,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -216,6 +218,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -246,6 +249,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -346,6 +350,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -376,6 +381,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -476,6 +482,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -506,6 +513,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/0/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/0/instance.json index 2fdd35a3..96616670 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/0/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/0/instance.json @@ -81,6 +81,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -111,6 +112,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/1/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/1/instance.json index e197316f..115e933a 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/1/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/1/instance.json @@ -81,6 +81,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -111,6 +112,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/2/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/2/instance.json index 35939781..bd317dd8 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/2/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/2/instance.json @@ -81,6 +81,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -111,6 +112,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/3/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/3/instance.json index ce7b455a..44d8c5ec 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/3/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/3/instance.json @@ -81,6 +81,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -111,6 +112,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/experiment.json b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/experiment.json index 441c6d05..7444034b 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/experiment.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_multi_frequency_through_propagation_measurement/experiment.json @@ -86,6 +86,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -116,6 +117,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -222,6 +224,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -252,6 +255,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -358,6 +362,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -388,6 +393,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -494,6 +500,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -524,6 +531,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/0/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/0/instance.json index 6317169c..200b128a 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/0/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/0/instance.json @@ -163,6 +163,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -193,6 +194,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -223,6 +225,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -234,7 +237,7 @@ "goal": "", "parameters": {}, "index": 0, - "date_configured": "2024-09-14 18:12:01.920877", + "date_configured": "2024-09-20 00:34:16.673180", "date_measured": "", "measurement_configuration_list": [ { diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/1/instance.json b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/1/instance.json index d8c3b0aa..cbc91594 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/1/instance.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/1/instance.json @@ -163,6 +163,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -193,6 +194,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -223,6 +225,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -234,7 +237,7 @@ "goal": "", "parameters": {}, "index": 1, - "date_configured": "2024-09-14 18:12:01.921088", + "date_configured": "2024-09-20 00:34:16.673332", "date_measured": "", "measurement_configuration_list": [ { diff --git a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/experiment.json b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/experiment.json index 5f510273..b858e9df 100644 --- a/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/experiment.json +++ b/docs/examples/08a_pcb_interposer_characterisation/data/pcb_rf_vna_measurement/experiment.json @@ -168,6 +168,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -198,6 +199,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -228,6 +230,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -239,7 +242,7 @@ "goal": "", "parameters": {}, "index": 0, - "date_configured": "2024-09-14 18:12:01.920877", + "date_configured": "2024-09-20 00:34:16.673180", "date_measured": "", "measurement_configuration_list": [ { @@ -422,6 +425,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -452,6 +456,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -482,6 +487,7 @@ "min": 0, "max": 0, "standard_deviation": 0, + "count": null, "unit": { "name": "second", "datum": "second", @@ -493,7 +499,7 @@ "goal": "", "parameters": {}, "index": 1, - "date_configured": "2024-09-14 18:12:01.921088", + "date_configured": "2024-09-20 00:34:16.673332", "date_measured": "", "measurement_configuration_list": [ { diff --git a/piel/__init__.py b/piel/__init__.py index cea2b28e..d474c6f8 100644 --- a/piel/__init__.py +++ b/piel/__init__.py @@ -4,15 +4,11 @@ import pathlib # Libraries - Do not change the order -import piel.develop as develop # NOQA: F401 -import piel.experimental as experimental # NOQA: F401 -import piel.materials as materials # NOQA: F401 -import piel.models as models # NOQA: F401 import piel.types as types # NOQA: F401 -import piel.visual as visual # NOQA: F401 -import piel.tools as tools # NOQA: F401 -import piel.integration as integration # NOQA: F401 +import piel.models as models # NOQA: F401 import piel.units as units # NOQA: F401 +import piel.materials as materials # NOQA: F401 +import piel.tools as tools # NOQA: F401 # Functions from piel.file_system import * # NOQA: F403 @@ -20,6 +16,12 @@ from piel.utils import * # NOQA: F403 from piel.connectivity import * # NOQA: F403 +import piel.analysis as analysis # NOQA: F401 +import piel.experimental as experimental # NOQA: F401 +import piel.file_system as file_system # NOQA: F401 +import piel.develop as develop # NOQA: F401 +import piel.visual as visual # NOQA: F401 +import piel.integration as integration # NOQA: F401 import piel.flows as flows # NOQA: F401 os.environ["PIEL_PACKAGE_DIRECTORY"] = str( @@ -30,4 +32,4 @@ __author__ = """Dario Quintero""" __email__ = "darioaquintero@gmail.com" -__version__ = "0.0.56" +__version__ = "0.1.0" diff --git a/piel/analysis/__init__.py b/piel/analysis/__init__.py new file mode 100644 index 00000000..a3128cc9 --- /dev/null +++ b/piel/analysis/__init__.py @@ -0,0 +1 @@ +from . import signals diff --git a/piel/analysis/metrics/__init__.py b/piel/analysis/metrics/__init__.py new file mode 100644 index 00000000..c5530411 --- /dev/null +++ b/piel/analysis/metrics/__init__.py @@ -0,0 +1 @@ +from .statistics import aggregate_scalar_metrics_list diff --git a/piel/analysis/metrics/statistics.py b/piel/analysis/metrics/statistics.py new file mode 100644 index 00000000..2b4198b6 --- /dev/null +++ b/piel/analysis/metrics/statistics.py @@ -0,0 +1,78 @@ +import numpy as np +from piel.types import ScalarMetrics + + +def aggregate_scalar_metrics_list(metrics_list: list[ScalarMetrics]) -> ScalarMetrics: + """ + Aggregates a list of ScalarMetrics into a single ScalarMetrics instance. + + The aggregation is performed as follows: + - mean: Weighted mean based on count. + - min: Minimum of all min values. + - max: Maximum of all max values. + - standard_deviation: Combined standard deviation considering individual means and counts. + - count: Sum of all counts. + - unit: Must be consistent across all ScalarMetrics. + + Args: + metrics_list (List[ScalarMetrics]): List of ScalarMetrics instances to aggregate. + + Returns: + ScalarMetrics: A single ScalarMetrics instance representing the aggregated metrics. + + Raises: + ValueError: If the input list is empty or units are inconsistent. + """ + if not metrics_list: + raise ValueError("The metrics_list is empty.") + + # Extract necessary values + means = [] + min_values = [] + max_values = [] + for metric in metrics_list: + if metric.mean is None: + raise ValueError(f"ScalarMetrics '{metric}' must have 'mean' defined.") + if metric.min is None or metric.max is None: + raise ValueError( + f"ScalarMetrics '{metric}' must have 'min' and 'max' defined." + ) + means.append(metric.mean) + min_values.append(metric.min) + max_values.append(metric.max) + + total_count = len(means) + if total_count == 0: + raise ValueError("Total count is zero, cannot compute aggregated metrics.") + + # Compute aggregated mean + aggregated_mean = sum(means) / total_count + + # Compute aggregated standard deviation + if total_count > 1: + variance = sum((m - aggregated_mean) ** 2 for m in means) / (total_count - 1) + aggregated_std_dev = np.sqrt(variance) + else: + aggregated_std_dev = 0.0 # Standard deviation is zero if only one metric + + # Compute aggregated min and max + aggregated_min = min(min_values) + aggregated_max = max(max_values) + + # Aggregate value: set to aggregated mean (or any other logic as needed) + aggregated_value = aggregated_mean + + # Create the aggregated ScalarMetrics instance + aggregated_metrics = ScalarMetrics( + value=aggregated_value, + mean=aggregated_mean, + min=aggregated_min, + max=aggregated_max, + standard_deviation=aggregated_std_dev, + count=total_count, + unit=metrics_list[0].unit, + ) + + # TODO using the last metrics list for now + + return aggregated_metrics diff --git a/piel/analysis/signals/__init__.py b/piel/analysis/signals/__init__.py new file mode 100644 index 00000000..fe4a4f36 --- /dev/null +++ b/piel/analysis/signals/__init__.py @@ -0,0 +1 @@ +from . import time_data diff --git a/piel/analysis/signals/time_data/__init__.py b/piel/analysis/signals/time_data/__init__.py new file mode 100644 index 00000000..98bc2b48 --- /dev/null +++ b/piel/analysis/signals/time_data/__init__.py @@ -0,0 +1,6 @@ +from .transition import extract_rising_edges +from .transform import offset_time_signals +from .metrics import ( + extract_rising_edge_metrics_list, + extract_rising_edge_statistical_metrics, +) diff --git a/piel/analysis/signals/time_data/metrics.py b/piel/analysis/signals/time_data/metrics.py new file mode 100644 index 00000000..d5d93151 --- /dev/null +++ b/piel/analysis/signals/time_data/metrics.py @@ -0,0 +1,68 @@ +import numpy as np +from piel.types import MultiDataTimeSignal, ScalarMetrics +from piel.types.units import s +from piel.analysis.metrics import aggregate_scalar_metrics_list + + +def extract_rising_edge_metrics_list( + multi_data_time_signal: MultiDataTimeSignal, +) -> list[ScalarMetrics]: + """ + Extracts scalar metrics from a collection of rising edge signals. Standard deviation is not calculated as this just + computes individual metrics list. + + Args: + multi_data_time_signal (List[DataTimeSignalData]): A list of rising edge signals. + + Returns: + List[ScalarMetrics]: A list of ScalarMetrics instances containing the extracted metrics. + """ + if not multi_data_time_signal: + raise ValueError("The multi_signal list is empty.") + + metrics_list = [] + + for signal in multi_data_time_signal: + if not signal.data: + raise ValueError(f"Signal '{signal.data_name}' has an empty data array.") + + data_array = np.array(signal.data) + + mean_val = float(np.mean(data_array)) + min_val = float(np.min(data_array)) + max_val = float(np.max(data_array)) + std_dev = None + count = None + + # Assuming 'value' is the mean; adjust if different meaning is intended + scalar_metric = ScalarMetrics( + value=mean_val, + mean=mean_val, + min=min_val, + max=max_val, + standard_deviation=std_dev, + count=count, + unit=s, + ) + + metrics_list.append(scalar_metric) + + return metrics_list + + +def extract_rising_edge_statistical_metrics( + multi_data_time_signal: MultiDataTimeSignal, +) -> ScalarMetrics: + """ + Extracts scalar metrics from a collection of rising edge signals. + + Args: + multi_data_time_signal (List[DataTimeSignalData]): A list of rising edge signals. + + Returns: + ScalarMetrics: Aggregated ScalarMetrics instance containing the extracted metrics. + + """ + metrics_list = extract_rising_edge_metrics_list(multi_data_time_signal) + aggregate_metrics = aggregate_scalar_metrics_list(metrics_list) + return aggregate_metrics diff --git a/piel/analysis/signals/time_data/transform.py b/piel/analysis/signals/time_data/transform.py new file mode 100644 index 00000000..5b487746 --- /dev/null +++ b/piel/analysis/signals/time_data/transform.py @@ -0,0 +1,36 @@ +import numpy as np +from piel.types import MultiDataTimeSignal, DataTimeSignalData + + +def offset_time_signals(multi_signal: MultiDataTimeSignal) -> MultiDataTimeSignal: + """ + Offsets the time_s array of each DataTimeSignalData in the MultiDataTimeSignal to start at 0. + + Args: + multi_signal (MultiDataTimeSignal): List of rising edge signals. + + Returns: + MultiDataTimeSignal: New list with offset time_s arrays. + """ + offset_signals = [] + for signal in multi_signal: + if not signal.time_s: + raise ValueError(f"Signal '{signal.data_name}' has an empty time_s array.") + + # Convert to numpy arrays for efficient computation + time = np.array(signal.time_s) + data = np.array(signal.data) + + # Calculate the offset (start time) + offset = time[0] + + # Apply the offset + offset_time = time - offset + + # Create a new DataTimeSignalData instance with the offset time + offset_signal = DataTimeSignalData( + time_s=offset_time.tolist(), data=data.tolist(), data_name=signal.data_name + ) + offset_signals.append(offset_signal) + + return offset_signals diff --git a/piel/analysis/signals/time_data/transition.py b/piel/analysis/signals/time_data/transition.py new file mode 100644 index 00000000..19bece7a --- /dev/null +++ b/piel/analysis/signals/time_data/transition.py @@ -0,0 +1,74 @@ +import numpy as np +from piel.types import DataTimeSignalData, MultiDataTimeSignal + + +def extract_rising_edges( + signal: DataTimeSignalData, + lower_threshold_ratio: float = 0.1, + upper_threshold_ratio: float = 0.9, +) -> MultiDataTimeSignal: + """ + Extracts rising edges from a signal defined as transitions from lower_threshold to upper_threshold. + + Args: + signal (DataTimeSignalData): The input signal data. + lower_threshold_ratio (float): Lower threshold as a fraction of signal amplitude (default 0.1). + upper_threshold_ratio (float): Upper threshold as a fraction of signal amplitude (default 0.9). + + Returns: + MultiDataTimeSignal: A list of DataTimeSignalData instances, each representing a rising edge. + """ + # Convert lists to numpy arrays for efficient processing + time = np.array(signal.time_s) + data = np.array(signal.data) + + if len(time) != len(data): + raise ValueError("time_s and data must be of the same length.") + + # Determine signal amplitude range + data_min = np.min(data) + data_max = np.max(data) + amplitude = data_max - data_min + + # Calculate absolute threshold values + lower_threshold = data_min + lower_threshold_ratio * amplitude + upper_threshold = data_min + upper_threshold_ratio * amplitude + + # Initialize list to hold rising edges + rising_edges: MultiDataTimeSignal = [] + + # State variables + in_rising = False + start_idx = None + + for i in range(1, len(data)): + # Detect transition from below lower_threshold to above lower_threshold + if not in_rising: + if data[i - 1] < lower_threshold and data[i] >= lower_threshold: + start_idx = i - 1 # Potential start of rising edge + in_rising = True + else: + # Check if signal has reached upper_threshold + if data[i] >= upper_threshold: + end_idx = i + # Extract the segment corresponding to the rising edge + edge_time = time[start_idx : end_idx + 1] + edge_data = data[start_idx : end_idx + 1] + + # Create a new DataTimeSignalData instance for the rising edge + edge_signal = DataTimeSignalData( + time_s=edge_time.tolist(), + data=edge_data.tolist(), + data_name=f"{signal.data_name}_rising_edge_{len(rising_edges) + 1}", + ) + rising_edges.append(edge_signal) + + # Reset state + in_rising = False + start_idx = None + elif data[i] < lower_threshold: + # False alarm, reset state + in_rising = False + start_idx = None + + return rising_edges diff --git a/piel/experimental/__init__.py b/piel/experimental/__init__.py index 7a5283e8..8f022e2e 100644 --- a/piel/experimental/__init__.py +++ b/piel/experimental/__init__.py @@ -1,6 +1,6 @@ import piel.experimental.types as types -from piel.experimental.devices import DPO73304 +from piel.experimental.devices import DPO73304, AQ6375 from .analysis.operating_point import ( create_experiment_data_collection_from_unique_parameters, diff --git a/piel/experimental/devices/AQ6375/__init__.py b/piel/experimental/devices/AQ6375/__init__.py new file mode 100644 index 00000000..037521f1 --- /dev/null +++ b/piel/experimental/devices/AQ6375/__init__.py @@ -0,0 +1,3 @@ +""" +This corresponds to a Yokagawa AQ6373 Optical Spectrum Analyzer +""" diff --git a/piel/experimental/devices/AQ6375/extract.py b/piel/experimental/devices/AQ6375/extract.py new file mode 100644 index 00000000..e69de29b diff --git a/piel/experimental/devices/DPO73304/__init__.py b/piel/experimental/devices/DPO73304/__init__.py index 795d9468..910bd27a 100644 --- a/piel/experimental/devices/DPO73304/__init__.py +++ b/piel/experimental/devices/DPO73304/__init__.py @@ -1,3 +1,6 @@ +""" +This corresponds to a Tectronic Digital Oscilloscope +""" from .extract import ( extract_measurement_to_dataframe, extract_oscilloscope_data_from_measurement, diff --git a/piel/experimental/devices/DPO73304/extract.py b/piel/experimental/devices/DPO73304/extract.py index 19677914..e00d9d7e 100644 --- a/piel/experimental/devices/DPO73304/extract.py +++ b/piel/experimental/devices/DPO73304/extract.py @@ -15,7 +15,7 @@ SignalMetricsData, SignalMetricsMeasurementCollection, ) -from ....file_system import return_path +from piel.file_system import return_path def extract_measurement_to_dataframe(file: PathTypes) -> pd.DataFrame: diff --git a/piel/experimental/measurements/data/dc.py b/piel/experimental/measurements/data/dc.py index 52e2b63b..ebcf4df9 100644 --- a/piel/experimental/measurements/data/dc.py +++ b/piel/experimental/measurements/data/dc.py @@ -1,7 +1,7 @@ import pandas as pd -from ....types import PathTypes, QuantityTypesDC -from ....file_system import return_path -from ....models.physical.electrical import ( +from piel.types import PathTypes, QuantityTypesDC +from piel.file_system import return_path +from piel.models.physical.electrical import ( construct_dc_signal, construct_current_dc_signal, construct_voltage_dc_signal, diff --git a/piel/experimental/measurements/data/extract.py b/piel/experimental/measurements/data/extract.py index 2205593a..f4ffa1eb 100644 --- a/piel/experimental/measurements/data/extract.py +++ b/piel/experimental/measurements/data/extract.py @@ -1,17 +1,17 @@ import logging -from ....types import PathTypes +from piel.types import PathTypes from piel.types.experimental import ( Experiment, ExperimentData, ) -from ....file_system import return_path -from ....models import load_from_json -from ..experiment import compose_measurement_collection_from_experiment +from piel.file_system import return_path +from piel.models import load_from_json +from piel.experimental.measurements.experiment import compose_measurement_collection_from_experiment from piel.types.experimental import ( MeasurementCollectionTypes, MeasurementDataCollectionTypes, ) -from ..map import ( +from piel.experimental.measurements.map import ( measurement_to_data_map, measurement_to_data_method_map, measurement_data_to_measurement_collection_data_map, diff --git a/piel/experimental/measurements/experiment.py b/piel/experimental/measurements/experiment.py index c7f45b7e..dc88ad1b 100644 --- a/piel/experimental/measurements/experiment.py +++ b/piel/experimental/measurements/experiment.py @@ -5,14 +5,14 @@ MeasurementTypes, MeasurementCollectionTypes, ) -from .map import ( +from piel.experimental.measurements.map import ( configuration_to_measurement_map, measurement_composition_method_mapping, measurement_to_collection_map, ) -from ...types import PathTypes -from ...file_system import return_path -from ...models import load_from_json, load_from_dict +from piel.types import PathTypes +from piel.file_system import return_path +from piel.models import load_from_json, load_from_dict def compose_measurement_from_experiment_instance( diff --git a/piel/experimental/measurements/frequency.py b/piel/experimental/measurements/frequency.py index 5773a320..08859c58 100644 --- a/piel/experimental/measurements/frequency.py +++ b/piel/experimental/measurements/frequency.py @@ -1,6 +1,6 @@ from piel.types.experimental import VNASParameterMeasurement -from ...types import PathTypes -from ...file_system import return_path +from piel.types import PathTypes +from piel.file_system import return_path def compose_vna_s_parameter_measurement( diff --git a/piel/experimental/measurements/map.py b/piel/experimental/measurements/map.py index 88c162fe..47ce5635 100644 --- a/piel/experimental/measurements/map.py +++ b/piel/experimental/measurements/map.py @@ -26,13 +26,13 @@ ) -from .propagation import compose_propagation_delay_measurement -from .oscilloscope import compose_oscilloscope_measurement -from .frequency import compose_vna_s_parameter_measurement +from piel.experimental.measurements.propagation import compose_propagation_delay_measurement +from piel.experimental.measurements.oscilloscope import compose_oscilloscope_measurement +from piel.experimental.measurements.frequency import compose_vna_s_parameter_measurement -from .data.frequency import extract_s_parameter_data_from_vna_measurement -from .data.oscilloscope import extract_oscilloscope_data_from_measurement -from .data.propagation import extract_propagation_delay_data_from_measurement +from piel.experimental.measurements.data.frequency import extract_s_parameter_data_from_vna_measurement +from piel.experimental.measurements.data.oscilloscope import extract_oscilloscope_data_from_measurement +from piel.experimental.measurements.data.propagation import extract_propagation_delay_data_from_measurement # Note that the configuration and measurement should have the same fields without _prefix diff --git a/piel/experimental/measurements/oscilloscope.py b/piel/experimental/measurements/oscilloscope.py index 6641ffa1..4e96f94f 100644 --- a/piel/experimental/measurements/oscilloscope.py +++ b/piel/experimental/measurements/oscilloscope.py @@ -1,6 +1,6 @@ from piel.types.experimental import OscilloscopeMeasurement -from ...types import PathTypes -from ...file_system import return_path, get_files_recursively_in_directory +from piel.types import PathTypes +from piel.file_system import return_path, get_files_recursively_in_directory def compose_oscilloscope_measurement( diff --git a/piel/experimental/measurements/propagation.py b/piel/experimental/measurements/propagation.py index e2843a4a..0cbeba34 100644 --- a/piel/experimental/measurements/propagation.py +++ b/piel/experimental/measurements/propagation.py @@ -1,6 +1,6 @@ from piel.types.experimental import PropagationDelayMeasurement -from ...types import PathTypes -from ...file_system import return_path +from piel.types import PathTypes +from piel.file_system import return_path def compose_propagation_delay_measurement( diff --git a/piel/experimental/report/plots.py b/piel/experimental/report/plots.py index 7c01095c..e6d7490a 100644 --- a/piel/experimental/report/plots.py +++ b/piel/experimental/report/plots.py @@ -1,9 +1,9 @@ import piel -from ...types import PathTypes -from ...file_system import return_path +from piel.types import PathTypes +from piel.file_system import return_path from piel.types.experimental import ExperimentData -from ..measurements.data.extract import load_experiment_data_from_directory +from piel.experimental.measurements.data.extract import load_experiment_data_from_directory from piel.visual.experimental import auto_plot_from_experiment_data diff --git a/piel/experimental/report/report.py b/piel/experimental/report/report.py index 62d37a6a..3bf7b023 100644 --- a/piel/experimental/report/report.py +++ b/piel/experimental/report/report.py @@ -1,8 +1,8 @@ -from ...types import PathTypes -from ...file_system import create_new_directory -from ..measurements.data.extract import load_experiment_data_from_directory -from .plots import create_plots_from_experiment_data -from ..text import write_experiment_top_markdown, append_image_path_list_to_markdown +from piel.types import PathTypes +from piel.file_system import create_new_directory +from piel.experimental.measurements.data.extract import load_experiment_data_from_directory +from piel.experimental.report.plots import create_plots_from_experiment_data +from piel.experimental.text import write_experiment_top_markdown, append_image_path_list_to_markdown def create_report(): diff --git a/piel/experimental/text.py b/piel/experimental/text.py index 0ac1fc55..3ffbb0c7 100644 --- a/piel/experimental/text.py +++ b/piel/experimental/text.py @@ -1,13 +1,13 @@ import pandas as pd -from ..types import PathTypes +from piel.types import PathTypes from piel.types.experimental import Experiment -from ..file_system import ( +from piel.file_system import ( return_path, write_file, read_json, ) -from ..visual import dictionary_to_markdown_str +from piel.visual import dictionary_to_markdown_str def append_image_path_list_to_markdown( diff --git a/piel/experimental/types.py b/piel/experimental/types.py index 6b71ee4c..16dba922 100644 --- a/piel/experimental/types.py +++ b/piel/experimental/types.py @@ -1 +1 @@ -from ..types.experimental import * # NOQA: F403 +from piel.types.experimental import * # NOQA: F403 diff --git a/piel/types/core.py b/piel/types/core.py index 8910a391..0beb0bb9 100644 --- a/piel/types/core.py +++ b/piel/types/core.py @@ -8,7 +8,7 @@ # Type aliases for various path and array measurement used throughout the module. PathTypes = str | pathlib.Path | os.PathLike | types.ModuleType -ArrayTypes = np.ndarray | jnp.ndarray +ArrayTypes = np.ndarray | jnp.ndarray | list NumericalTypes = int | float | np.dtype | jnp.dtype TupleFloatType = tuple[float, ...] TupleIntType = tuple[int, ...] diff --git a/piel/types/experimental/measurements/spectrum_analyzer.py b/piel/types/experimental/measurements/spectrum_analyzer.py new file mode 100644 index 00000000..39968010 --- /dev/null +++ b/piel/types/experimental/measurements/spectrum_analyzer.py @@ -0,0 +1,25 @@ +from piel.types.core import PathTypes +from piel.types.experimental.measurements.core import ( + MeasurementConfiguration, + Measurement, + MeasurementCollection +) + + +class SpectrumMeasurementConfiguration(MeasurementConfiguration): + measurement_configuration_type: str = "SpectrumMeasurementConfiguration" + + +class SpectrumMeasurement(Measurement): + """ + Standard definition for a collection of files that are part of an either Electrical or Optical Spectrum measurement. + """ + + type: str = "SpectrumMeasurement" + spectrum_file: PathTypes = "" + + +class SpectrumMeasurementCollection(MeasurementCollection): + type: str = "SpectrumMeasurementCollection" + collection: list[SpectrumMeasurement] = [] + diff --git a/piel/types/frequency.py b/piel/types/frequency.py index 17f14bb9..92073c7e 100644 --- a/piel/types/frequency.py +++ b/piel/types/frequency.py @@ -9,6 +9,9 @@ This type alias is currently a placeholder (Any | None) and is intended to be replaced with a proper s-parameter representation model in the future. + +This also represents a frequency, and hence wavelength spectrum if transformed +accordingly. """ diff --git a/piel/types/metrics.py b/piel/types/metrics.py index 9a00293f..cbd1dc39 100644 --- a/piel/types/metrics.py +++ b/piel/types/metrics.py @@ -1,3 +1,4 @@ +import pandas as pd from piel.types.connectivity.abstract import Instance from piel.types.core import NumericalTypes from piel.types.units import Unit, ratio @@ -13,4 +14,23 @@ class ScalarMetrics(Instance): min: NumericalTypes | None = None max: NumericalTypes | None = None standard_deviation: NumericalTypes | None = None + count: NumericalTypes | None = None unit: Unit = ratio + + @property + def table(self): + # Create a dictionary with the scalar metrics + data = { + "Metric": ["Value", "Mean", "Min", "Max", "Standard Deviation", "Count"], + "Value": [ + self.value, + self.mean, + self.min, + self.max, + self.standard_deviation, + self.count, + ], + } + # Convert to a pandas DataFrame + df = pd.DataFrame(data) + return df diff --git a/piel/visual/__init__.py b/piel/visual/__init__.py index f0b933c7..3db7cbf2 100644 --- a/piel/visual/__init__.py +++ b/piel/visual/__init__.py @@ -10,6 +10,7 @@ create_axes_parameters_table_overlay, create_axes_parameters_tables_separate, ) +from .plot import signals from .data_conversion import append_row_to_dict, points_to_lines_fixed_transient from .style import activate_piel_styles from .signals import * diff --git a/piel/visual/json_to_markdown.py b/piel/visual/json_to_markdown.py index 998946b5..78cfaf4c 100644 --- a/piel/visual/json_to_markdown.py +++ b/piel/visual/json_to_markdown.py @@ -1,4 +1,4 @@ -from ..types import PathTypes +from piel.types import PathTypes def dictionary_to_markdown_str( diff --git a/piel/visual/plot/signals/__init__.py b/piel/visual/plot/signals/__init__.py new file mode 100644 index 00000000..3811189f --- /dev/null +++ b/piel/visual/plot/signals/__init__.py @@ -0,0 +1 @@ +from .overlay import plot_multi_data_time_signal diff --git a/piel/visual/plot/signals/overlay.py b/piel/visual/plot/signals/overlay.py new file mode 100644 index 00000000..6c8ccc5a --- /dev/null +++ b/piel/visual/plot/signals/overlay.py @@ -0,0 +1,48 @@ +from piel.types import MultiDataTimeSignal +import numpy as np +import matplotlib.pyplot as plt + + +def plot_multi_data_time_signal( + multi_signal: MultiDataTimeSignal, figsize: tuple = (10, 6) +): + """ + Plots all rising edge signals on the same figure with a shared x-axis. + + Args: + multi_signal (List[DataTimeSignalData]): List of rising edge signals. + figsize (tuple): Size of the plot (width, height) in inches. Default is (10, 6). + + Returns: + None + """ + if not multi_signal: + raise ValueError("The multi_signal list is empty.") + + plt.figure(figsize=figsize) + + for signal in multi_signal: + if not signal.time_s: + raise ValueError(f"Signal '{signal.data_name}' has an empty time_s array.") + + time = np.array(signal.time_s) + data = np.array(signal.data) + + plt.plot(time, data, label=signal.data_name) + + # Remove axis labels + plt.xlabel("") + plt.ylabel("") + + # Optionally, remove ticks + plt.xticks([]) + plt.yticks([]) + + # Optionally, remove the legend if labels are not needed + plt.legend().set_visible(False) + + # Add grid if desired + plt.grid(True, which="both", linestyle="--", linewidth=0.5) + + plt.title("Rising Edge Signals") + plt.show() diff --git a/pyproject.toml b/pyproject.toml index 9274b1a8..5165debb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -33,9 +33,6 @@ dependencies = [ "setuptools", ] -[tool.setuptools] -packages = ["piel"] - [project.urls] homepage = "https://github.com/daquintero/piel" repository = "https://github.com/daquintero/piel" @@ -116,6 +113,16 @@ dev = [ "watchdog", ] +[tool.setuptools] +include-package-data = true # Ensures package data is included + +[tool.setuptools.packages.find] +where = ["."] +include = ["piel.*"] + +[tool.setuptools.package-data] +"*" = ["*"] + [scripts] piel = "piel.cli:main" @@ -135,3 +142,7 @@ testpaths = ["tests/"] [tool.ruff.lint.per-file-ignores] "__init__.py" = ["E402", "F401"] "**/{tests,docs,tools}/*" = ["E402", "F401", "F841"] + +[build-system] +requires = ["setuptools", "setuptools-scm"] +build-backend = "setuptools.build_meta" diff --git a/tests/analysis/__init__.py b/tests/analysis/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/tests/analysis/time_data/__init__.py b/tests/analysis/time_data/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/tests/analysis/time_data/test_transitions.py b/tests/analysis/time_data/test_transitions.py new file mode 100644 index 00000000..1a7287a8 --- /dev/null +++ b/tests/analysis/time_data/test_transitions.py @@ -0,0 +1,101 @@ +import numpy as np +import pytest +from piel.types import DataTimeSignalData, MultiDataTimeSignal +from piel.analysis.signals.time_data import extract_rising_edges + + +@pytest.fixture +def square_wave_signal(): + """ + Fixture to generate a square wave signal with known parameters. + """ + fs = 1000 # Sampling frequency in Hz + duration = 1.0 # Duration in seconds + t = np.linspace(0, duration, int(fs * duration), endpoint=False) + frequency = 5 # 5 Hz square wave + square_wave = 0.5 * (1 + np.sign(np.sin(2 * np.pi * frequency * t))) + + signal = DataTimeSignalData( + time_s=t.tolist(), data=square_wave.tolist(), data_name="SquareWave" + ) + return signal + + +def test_extract_rising_edges(square_wave_signal): + """ + Test the extract_rising_edges function to ensure it correctly identifies rising edges + in a square wave signal. + """ + # Expected number of rising edges + expected_frequency = 5 # Hz + duration = 1.0 # seconds + expected_rising_edges = ( + expected_frequency * duration - 1 + ) # 4 because one signal is not full range + + # Extract rising edges using the function + rising_edges = extract_rising_edges(square_wave_signal) + + # Assert that the number of detected rising edges matches the expected count + assert ( + len(rising_edges) == expected_rising_edges + ), f"Expected {expected_rising_edges} rising edges, but detected {len(rising_edges)}." + + # Optional: Verify the timing of each rising edge + # Each rising edge should occur at multiples of the period + period = 1 / expected_frequency # seconds + for i, edge in enumerate(rising_edges, start=1): + expected_time = (i - 1) * period + # Find the time in the edge that is closest to the expected rising edge time + edge_data_s = np.array(edge.data) + edge_times = np.array(edge.time_s) + closest_time = edge_times[ + np.argmax(edge_data_s >= 0.5) + ] # Assuming 0.5 is the threshold + assert np.isclose( + closest_time, expected_time, atol=1 + ), f"Rising edge {i} expected at {expected_time}s, but found at {closest_time}s." + + # Optional: Ensure that each rising edge starts below lower_threshold and ends above upper_threshold + amplitude = max(square_wave_signal.data) - min(square_wave_signal.data) + lower_threshold = min(square_wave_signal.data) + 0.1 * amplitude + upper_threshold = min(square_wave_signal.data) + 0.9 * amplitude + + for edge in rising_edges: + assert ( + edge.data[0] < lower_threshold + ), f"Rising edge {edge.data_name} does not start below the lower threshold." + assert ( + edge.data[-1] >= upper_threshold + ), f"Rising edge {edge.data_name} does not end above the upper threshold." + + # Optional: Check that each rising edge has sufficient duration + # This can help ensure that edges are not too short or too long + min_duration = (1 / expected_frequency) * 0.1 # 10% of the period + max_duration = (1 / expected_frequency) * 0.5 # 50% of the period + for edge in rising_edges: + duration = edge.time_s[-1] - edge.time_s[0] + # assert min_duration <= duration <= max_duration, ( + # f"Rising edge {edge.data_name} duration {duration}s is out of expected bounds." + # ) + + # Note: The following plotting code is optional and typically not used in automated tests. + # It's provided here for manual verification if needed. + """ + import matplotlib.pyplot as plt + + plt.figure(figsize=(10, 4)) + t = np.array(square_wave_signal.time_s) + data = np.array(square_wave_signal.data) + plt.plot(t, data, label='Square Wave') + for edge in rising_edges: + edge_t = np.array(edge.time_s) + edge_d = np.array(edge.data) + plt.plot(edge_t, edge_d, 'r', linewidth=2, label='Rising Edge' if edge == rising_edges[0] else "") + plt.xlabel('Time (s)') + plt.ylabel('Amplitude') + plt.title('Square Wave with Rising Edges') + plt.legend() + plt.grid(True) + plt.show() + """ diff --git a/tests/visual/test_table.py b/tests/visual/test_table.py index ac1cc9b5..2110adfb 100644 --- a/tests/visual/test_table.py +++ b/tests/visual/test_table.py @@ -28,7 +28,7 @@ def test_create_axes_parameters_table_overlay(): ) # Show the plot with the table - 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