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setup.py
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setup.py
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import os
import setuptools
_findver = "__version__ = "
_rootpath = os.path.join(os.path.dirname(__file__), "bsb", "__init__.py")
with open(_rootpath, "r") as f:
for line in f:
if "__version__ = " in line:
f = line.find(_findver)
__version__ = eval(line[line.find(_findver) + len(_findver) :])
break
else:
raise Exception(f"No `__version__` found in '{_rootpath}'.")
with open("README.md", "r") as fh:
long_description = fh.read()
requires = [
"bsb-hdf5~=0.7.1",
"h5py~=3.0",
"numpy~=1.19",
"scipy~=1.5",
"scikit-learn~=1.0",
"plotly~=5.5",
"colour~=0.1",
"errr~=1.2",
"rtree~=1.0",
"psutil~=5.8",
"pynrrd~=1.0",
"morphio~=3.3",
"toml",
"requests",
"appdirs~=1.4",
"neo[nixio]",
"tqdm~=4.50",
"shortuuid",
"quantities",
]
setuptools.setup(
name="bsb",
version=__version__,
author="Robin De Schepper, Alice Geminiani, Alberto Antonietti, Stefano Casali,"
+ " Egidio D'Angelo, Claudia Casellato",
author_email="[email protected]",
description="A component framework for modelling morphologically detailed neuronal"
+ " microcircuits",
include_package_data=True,
package_data={
"bsb": [
"config/templates/*.json",
"unittest/data/configs/*",
"unittest/data/morphologies/*",
"unittest/data/parser_tests/*",
]
},
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/dbbs-lab/bsb",
license="GPLv3",
packages=setuptools.find_packages(exclude=["tests"]),
classifiers=[
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Operating System :: OS Independent",
],
entry_points={
"console_scripts": ["bsb = bsb.cli:handle_cli"],
"bsb.storage.engines": ["fs = bsb.storage.fs"],
"bsb.simulation_backends": [
"arbor = bsb.simulators.arbor",
"nest = bsb.simulators.nest",
"neuron = bsb.simulators.neuron",
],
"bsb.commands": [
"commands = bsb.cli.commands._commands",
"projects = bsb.cli.commands._projects",
],
"bsb.config.parsers": ["json = bsb.config.parsers.json"],
"bsb.config.templates": ["bsb_templates = bsb.config.templates"],
"bsb.options": [
"verbosity = bsb._options:verbosity",
"sudo = bsb._options:sudo",
"version = bsb._options:version",
"config = bsb._options:config",
"profiling = bsb._options:profiling",
],
},
python_requires="~=3.8",
install_requires=requires,
project_urls={
"Bug Tracker": "https://github.com/dbbs-lab/bsb/issues/",
"Documentation": "https://bsb.readthedocs.io/",
"Source Code": "https://github.com/dbbs-lab/bsb/",
},
extras_require={
"dev": [
"sphinx~=5.0",
"furo",
"pre-commit",
"black~=22.3.0",
"nrn-subprocess~=1.3.4",
"sphinxemoji",
"sphinx_design~=0.2",
"sphinx-copybutton~=0.5",
"sphinxext-bsb~=0.0.2",
"snakeviz",
],
"arbor": ["arbor~=0.6", "arborize[arbor]==4.0.0a4"],
"neuron": ["nrn-patch==4.0.0a4", "arborize[neuron]==4.0.0a4"],
"mpi": ["mpi4py~=3.0", "zwembad", "mpilock~=1.1"],
},
)