publications.bib

@article{huijsmans_quantifying_2024,
	title = {Quantifying maternal investment in mammals using allometry},
	volume = {7},
	copyright = {2024 The Author(s)},
	issn = {2399-3642},
	url = {https://www.nature.com/articles/s42003-024-06165-x},
	doi = {10.1038/s42003-024-06165-x},
	abstract = {Maternal investment influences the survival and reproduction of both mothers and their progeny and plays a crucial role in understanding individuals{\textquoteright} life-history and population ecology. To reveal the complex mechanisms associated with reproduction and investment, it is necessary to examine variations in maternal investment across species. Comparisons across species call for a standardised method to quantify maternal investment, which remained to be developed. This paper addresses this limitation by introducing the maternal investment metric {\textendash} MI {\textendash}~for mammalian species, established through the allometric scaling of the litter mass at weaning age by the adult mass and investment duration (i.e. gestation + lactation duration) of a species. Using a database encompassing hundreds of mammalian species, we show that the metric is not highly sensitive to the regression method used to fit the allometric relationship or to the proxy used for adult body mass. The comparison of the maternal investment metric between mammalian subclasses and orders reveals strong differences across taxa. For example, our metric confirms that Eutheria have a higher maternal investment than Metatheria. We discuss how further research could use the maternal investment metric as a valuable tool to understand variation in reproductive strategies.},
	language = {en},
	number = {1},
	urldate = {2024-04-18},
	journal = {Communications Biology},
	author = {Huijsmans, Tim E. R. G. and Courtiol, Alexandre and Van Soom, Ann and Smits, Katrien and Rousset, Fran{\c c}ois and Wauters, Jella and Hildebrandt, Thomas B.},
	month = apr,
	year = {2024},
	note = {Publisher: Nature Publishing Group},
	keywords = {dzg\_recent, dzg\_methods\_quantitative, dzg\_traits\_fitness, Animal physiology, Evolutionary developmental biology, dzg\_taxon\_marsupial},
	pages = {1--12},
	file = {Full Text PDF:/home/alex/Zotero/storage/CWNG84HA/Huijsmans et al. - 2024 - Quantifying maternal investment in mammals using a.pdf:application/pdf},
}

@article{heim_guild-specific_2024,
	title = {Guild-specific response of bats to motion-triggered {LED} lighting of bicycle trails},
	volume = {n/a},
	issn = {2578-4854},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/csp2.13116},
	doi = {10.1111/csp2.13116},
	abstract = {Motion-triggered light-emitting diodes (LED) could reduce light pollution; however, its effect on nocturnal animals is poorly known. Here, we investigated how bats respond to the motion-triggered lighting of a bicycle path, an infrastructure that is increasingly being built to support human mobility. We measured the acoustic activity of bats in relation to the activity of LED lights. The responses of bats varied during the night and between functional guilds: Edge-space foraging bats avoided LED lighting, but the response was less clear during early and late night. Open-space foraging and narrow-space foraging bats avoided the LED lighting, especially late at night. The foraging intensity remained relatively stable across the night for bats of all guilds. We conclude that the motion-sensitive LED lighting of bicycle paths induces a guild-specific avoidance response in bats, which could be mitigated by shorter lighting periods.},
	language = {en},
	number = {n/a},
	urldate = {2024-04-01},
	journal = {Conservation Science and Practice},
	author = {Heim, Olga and Ch{\'a}vez, Fernanda and Courtiol, Alexandre and Paul, Frederike and Voigt, Christian C.},
	year = {2024},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/csp2.13116},
	keywords = {ALAN, bicycle trails, dzg\_conservation\_degradation, dzg\_recent, functional bat guilds, LED, motion-triggered lighting, sustainable mobility, dzg\_taxon\_bat},
	pages = {e13116},
	file = {Full Text PDF:/home/alex/Zotero/storage/FAQUN826/Heim et al. - Guild-specific response of bats to motion-triggere.pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/5KBN2NTI/csp2.html:text/html},
}

@article{vriend_temperature_2022,
	title = {Temperature synchronizes temporal variation in laying dates across {European} hole-nesting passerines},
	copyright = {cc\_by\_4},
	issn = {0012-9658},
	url = {https://doi.org/10.1002/ecy.3908},
	doi = {10.1002/ecy.3908},
	abstract = {Identifying the environmental drivers of variation in fitness-related traits is a central objective in ecology and evolutionary biology. Temporal fluctuations of these environmental drivers are often synchronized at large spatial scales. Yet, whether synchronous environmental conditions can generate spatial synchrony in fitness-related trait values (i.e., correlated temporal trait fluctuations across populations) is poorly understood. Using data from long-term monitored populations of blue tits (Cyanistes caeruleus, n = 31), great tits (Parus major, n = 35) and pied flycatchers (Ficedula hypoleuca, n = 20) across Europe, we assessed the influence of two local climatic variables (mean temperature and mean precipitation in February-May) on spatial synchrony in three fitness-related traits: laying date, clutch size, and fledgling number. We found a high degree of spatial synchrony in laying date, but a lower degree in clutch size and fledgling number for each species. Temperature strongly influenced spatial synchrony in laying date for resident blue tits and great tits, but not for migratory pied flycatchers. This is an important finding in the context of environmental impacts on populations because spatial synchrony in fitness-related trait values among populations may influence fluctuations in vital rates or population abundances. If environment-induced spatial synchrony in fitness-related traits increases the spatial synchrony in vital rates or population abundances, this will ultimately increase the risk of extinction for populations and species. Assessing how environmental conditions influence spatiotemporal variation in trait values improves our mechanistic understanding of environmental impacts on populations.},
	language = {en},
	urldate = {2023-02-05},
	journal = {Ecology},
	author = {Vriend, Stefan J. G. and Grotan, Vidar and Gamelon, Marlene and Adriaensen, Frank and Ahola, Markus P. and Alvarez, Elena and Bailey, Liam D. and Barba, Emilio and Bouvier, Jean-Charles and Burgess, Malcolm D. and Bushuev, Andrey and Camacho, Carlos and Canal, David and Charmantier, Anne and Cole, Ella F. and Cusimano, Camillo and Doligez, Blandine F. and Drobniak, Szymon M. and Dubiec, Anna and Eens, Marcel and Eeva, Tapio and Erikstad, Kjell Einar and Ferns, Peter N. and Goodenough, Anne E. and Hartley, Ian R. and Hinsley, Shelley A. and Ivankina, Elena and Ju{\v s}kaitis, Rimvydas and Kempenaers, Bart and Kerimov, Anvar B. and Kalas, John Atle and Lavigne, Claire and Leivits, Agu and Mainwaring, Mark C. and Martinez-Padilla, Jesus and Matthysen, Erik and van Oers, Kees and Orell, Markku and Pinxten, Rianne and Reiertsen, Tone Kristin and Rytk{\"o}nen, Seppo and Senar, Juan Carlos and Sheldon, Ben C. and Sorace, Alberto and T{\"o}r{\"o}k, J{\'a}nos and Vatka, Emma and Visser, Marcel E. and Saether, Bernt-Erik},
	month = oct,
	year = {2022},
	keywords = {dzg\_taxon\_bird, dzg\_traits\_climate},
	pages = {e3908},
	file = {Full Text PDF:/home/alex/Zotero/storage/WL73JF32/Vriend et al. - 2022 - Temperature synchronizes temporal variation in lay.pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/GDQJN8X5/11593.html:text/html},
}

@article{seltmann_differences_2022,
	title = {Differences in acute phase response to bacterial, fungal and viral antigens in greater mouse-eared bats ({Myotis} myotis)},
	volume = {12},
	copyright = {2022 The Author(s)},
	issn = {2045-2322},
	url = {https://www.nature.com/articles/s41598-022-18240-6},
	doi = {10.1038/s41598-022-18240-6},
	abstract = {The acute phase response (APR) is an evolutionarily well-conserved part of the innate immune defense against pathogens. However, recent studies in bats yielded surprisingly diverse results compared to previous APR studies on both vertebrate and invertebrate species. This is especially interesting due to the known role of bats as reservoirs for viruses and other intracellular pathogens, while being susceptible to extracellular microorganisms such as some bacteria and fungi. To better understand these discrepancies and the reservoir-competence of bats, we mimicked bacterial, viral and fungal infections in greater mouse-eared bats (Myotis myotis) and quantified different aspects of the APR over a two-day period. Individuals reacted most strongly to a viral (PolyI:C) and a bacterial (LPS) antigen, reflected by an increase of haptoglobin levels (LPS) and an increase of the neutrophil-to-lymphocyte-ratio (PolyI:C and LPS). We did not detect fever, leukocytosis, body mass loss, or a change in the overall functioning of the innate immunity upon challenge with any antigen. We add evidence that bats respond selectively with APR to specific pathogens and that the activation of different parts of the immune system is species-specific.},
	language = {en},
	number = {1},
	urldate = {2022-09-15},
	journal = {Scientific Reports},
	author = {Seltmann, Anne and Troxell, Sara A. and Schad, Julia and Fritze, Marcus and Bailey, Liam D. and Voigt, Christian C. and Czirj{\'a}k, G{\'a}bor {\'A}},
	month = sep,
	year = {2022},
	note = {Number: 1
Publisher: Nature Publishing Group},
	keywords = {dzg\_health\_immunity, dzg\_taxon\_bat},
	pages = {15259},
	file = {Full Text PDF:/home/alex/Zotero/storage/GD5WSZM7/Seltmann et al. - 2022 - Differences in acute phase response to bacterial, .pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/P9FEERJH/s41598-022-18240-6.html:text/html},
}

@article{rickard_mothers_2022,
	title = {Mothers with higher twinning propensity had lower fertility in pre-industrial {Europe}},
	volume = {13},
	copyright = {2022 The Author(s)},
	issn = {2041-1723},
	url = {https://www.nature.com/articles/s41467-022-30366-9},
	doi = {10.1038/s41467-022-30366-9},
	abstract = {Historically, mothers producing twins gave birth, on average, more often than non-twinners. This observation has been interpreted as twinners having higher intrinsic fertility {\textendash} a tendency to conceive easily irrespective of age and other factors {\textendash} which has shaped both hypotheses about why twinning persists and varies across populations, and the design of medical studies on female fertility. Here we show in {\textgreater}20k pre-industrial European mothers that this interpretation results from an ecological fallacy: twinners had more births not due to higher intrinsic fertility, but because mothers that gave birth more accumulated more opportunities to produce twins. Controlling for variation in the exposure to the risk of twinning reveals that mothers with higher twinning propensity {\textendash} a physiological predisposition to producing twins {\textendash} had fewer births, and when twin mortality was high, fewer offspring reaching adulthood. Twinning rates may thus be driven by variation in its mortality costs, rather than variation in intrinsic fertility.},
	language = {en},
	number = {1},
	urldate = {2022-05-24},
	journal = {Nature Communications},
	author = {Rickard, Ian J. and Vullioud, Colin and Rousset, Fran{\c c}ois and Postma, Erik and Helle, Samuli and Lummaa, Virpi and Kylli, Ritva and Pettay, Jenni E. and R{\o}skaft, Eivin and Skj{\ae}rv{\o}, Gine R. and St{\"o}rmer, Charlotte and Voland, Eckart and Waldvogel, Dominique and Courtiol, Alexandre},
	month = may,
	year = {2022},
	note = {Number: 1
Publisher: Nature Publishing Group},
	keywords = {Statistical methods, dzg\_taxon\_primate, dzg\_traits\_fitness, Behavioural ecology, Biological anthropology, dzg\_best, Human behaviour},
	pages = {2886},
	file = {Full Text PDF:/home/alex/Zotero/storage/C8BW9VX2/Rickard et al. - 2022 - Mothers with higher twinning propensity had lower .pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/H5L24UH3/s41467-022-30366-9.html:text/html},
}

@article{kruszynski_high_2022,
	title = {High vulnerability of juvenile {Nathusius}' pipistrelle bats (\textit{{Pipistrellus} nathusii} ) at wind turbines},
	volume = {32},
	issn = {1051-0761, 1939-5582},
	shorttitle = {High vulnerability of juvenile {\textless}span style="font-variant},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/eap.2513},
	doi = {10.1002/eap.2513},
	language = {en},
	number = {2},
	urldate = {2022-05-06},
	journal = {Ecological Applications},
	author = {Kruszynski, Cecilia and Bailey, Liam D. and Bach, Lothar and Bach, Petra and Fritze, Marcus and Lindecke, Oliver and Teige, Tobias and Voigt, Christian C.},
	month = mar,
	year = {2022},
	keywords = {dzg\_conservation\_degradation, dzg\_taxon\_bat, dzg\_behaviour\_migration},
	file = {Full Text:/home/alex/Zotero/storage/P3FST4ZL/Kruszynski et al. - 2022 - High vulnerability of juvenile span style=font-v.pdf:application/pdf},
}

@article{frauendorf_love_2022,
	title = {Love thy neighbour?{\textemdash}{Spatial} variation in density dependence of nest survival in relation to predator community},
	volume = {28},
	issn = {1472-4642},
	shorttitle = {Love thy neighbour?},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/ddi.13457},
	doi = {10.1111/ddi.13457},
	abstract = {Aim In many species, density-dependent effects on reproduction are an important driver of population dynamics. However, it is rarely considered that the direction of density dependence is expected to vary over space and time depending on anti-predator behaviour and predator community. Aggregation may allow for effective group mobbing against avian nest predators while aggregation may also attract mammalian predators, causing negative density dependence. We aim to quantify spatial variation in the effect of conspecific breeding density on nest survival in a mobbing bird species (Eurasian oystercatcher; Haematopus ostralegus) and identify whether this variation in density dependence can be explained by the predator community. Location Country-wide (The Netherlands). Methods We integrated reproductive data with breeding territory maps of Eurasian oystercatchers and occupancy maps of avian and mammalian predator species across the Netherlands for a 10-year period. Results Spatial variation in the composition of the predator community explained the effects of neighbour density, showing decreasing nest survival when both conspecific density and mammalian dominance increased. Also, heterospecific density (from breeding godwits and lapwing) has an additional effect on the oystercatcher nest survival. Strikingly, this pattern did not extend to mammal-free island populations. Main conclusions Our study provides evidence that both the strength and sign of density dependence can vary spatially within species, implying that it is dangerous to generalize results from a single local population to large-scale management implications and modelling exercises. The study also suggests that conservation actions that aim to attract breeding birds should be prioritized in areas with fewer mammalian predators, but this idea requires further testing on island populations.},
	language = {en},
	number = {4},
	urldate = {2022-08-02},
	journal = {Diversity and Distributions},
	author = {Frauendorf, Magali and Allen, Andrew M. and Jongejans, Eelke and Ens, Bruno J. and Teunissen, Wolf and Kampichler, Christian and van Turnhout, Chris A. M. and Bailey, Liam D. and de Kroon, Hans and Cremer, Jenny and Kleyheeg, Erik and Nienhuis, Jeroen and van de Pol, Martijn},
	year = {2022},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/ddi.13457},
	keywords = {dzg\_taxon\_bird, Allee effect, dzg\_traits\_lifespan, anti-predator behaviour, dzg\_traits\_demography, meadow bird, mobbing, nest predation, predator{\textendash}prey interaction},
	pages = {624--635},
	file = {Full Text PDF:/home/alex/Zotero/storage/QMQ34L3H/Frauendorf et al. - 2022 - Love thy neighbour{\textemdash}Spatial variation in density d.pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/TY6VW2TQ/ddi.html:text/html},
}

@article{fasel_assigning_2022,
	title = {Assigning metabolic rate measurements to torpor and euthermy in heterothermic endotherms: {\textquoteleft}torpor{\textquoteright}, a new package for {R}},
	volume = {11},
	issn = {2046-6390},
	shorttitle = {Assigning metabolic rate measurements to torpor and euthermy in heterothermic endotherms},
	url = {https://doi.org/10.1242/bio.059064},
	doi = {10.1242/bio.059064},
	abstract = {Torpor is a state of controlled reduction of metabolic rate (M) in endotherms. Assigning measurements of M to torpor or euthermy can be challenging, especially when the difference between euthermic M and torpid M is small, in species defending a high minimal body temperature in torpor, in thermolabile species, and slightly below the thermoneutral zone (TNZ). Here, we propose a novel method for distinguishing torpor from euthermy. We use the variation in M measured during euthermic rest and torpor at varying ambient temperatures (Ta) to objectively estimate the lower critical temperature (Tlc) of the TNZ and to assign measurements to torpor, euthermic rest or rest within TNZ. In addition, this method allows the prediction of M during euthermic rest and torpor at varying Ta, including resting M within the TNZ. The present method has shown highly satisfactory results using 28 published sets of metabolic data obtained by respirometry on 26 species of mammals. Ultimately, this novel method aims to facilitate analysis of respirometry data in heterothermic endotherms. Finally, the development of the associated R-package (torpor) will enable widespread use of the method amongst biologists.},
	number = {4},
	urldate = {2022-05-03},
	journal = {Biology Open},
	author = {Fasel, Nicolas J. and Vullioud, Colin and Genoud, Michel},
	month = apr,
	year = {2022},
	keywords = {dzg\_methods\_packages},
	pages = {bio059064},
	file = {Full Text PDF:/home/alex/Zotero/storage/YP4HDWUV/Fasel et al. - 2022 - Assigning metabolic rate measurements to torpor an.pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/HV2Z9VQU/274930.html:text/html},
}

@article{dheer_diurnal_2022,
	title = {Diurnal pastoralism does not reduce juvenile recruitment nor elevate allostatic load in spotted hyenas},
	volume = {n/a},
	issn = {1365-2656},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/1365-2656.13812},
	doi = {10.1111/1365-2656.13812},
	abstract = {Anthropogenic activity can have substantial effects on wildlife. These effects may vary according to the characteristics of the activity and the species involved. Although effects on behaviour are well studied, studies of effects on fitness and physiology are scarce, particularly for group-living species. We exploited a natural experimental setup to investigate the effect of diurnal pastoralism on juvenile recruitment and allostatic load in a population of free-ranging spotted hyenas in the Ngorongoro Crater, Tanzania, over a 24-year period. Pastoralism was restricted to the territories of two of the eight study clans, allowing us to compare juvenile recruitment in exposed and unexposed clans. We also compared faecal glucocorticoid metabolite concentrations (fGMC){\textemdash}a biomarker of an organism's allostatic load{\textemdash}between exposed and unexposed clans using 975 faecal samples from 475 hyenas. We found no detectable difference in juvenile recruitment nor fGMC between the exposed and unexposed clans, indicating that the pastoralism had no substantial deleterious effect on the spotted hyenas. The lack of a deleterious effect likely stems from the combined effect of the predictable and undisruptive nature of the pastoralism, the socio-ecology of spotted hyenas and the Ngorongoro Crater's consistently abundant prey. Our findings demonstrate that exposure to anthropogenic activity may be compatible with the persistence of certain group-living species, especially if the overlap between the species' critical behaviours and the activity is limited. Our study thereby provides new perspectives for ecologists, conservation biologists and stakeholders who seek to assess human{\textendash}wildlife conflicts and balance the needs of local human communities and wildlife.},
	language = {en},
	number = {n/a},
	urldate = {2022-10-06},
	journal = {Journal of Animal Ecology},
	author = {Dheer, Arjun and Davidian, Eve and Courtiol, Alexandre and Bailey, Liam D. and Wauters, Jella and Naman, Philemon and Shayo, Victoria and H{\"o}ner, Oliver P.},
	month = oct,
	year = {2022},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/1365-2656.13812},
	keywords = {dzg\_conservation\_degradation, dzg\_taxon\_carnivore, dzg\_traits\_fitness, dzg\_health\_immunity},
	file = {Full Text PDF:/home/alex/Zotero/storage/AEGZGV7T/Dheer et al. - Diurnal pastoralism does not reduce juvenile recru.pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/8HMZKS5E/1365-2656.html:text/html},
}

@article{bonnet_genetic_2022,
	title = {Genetic variance in fitness indicates rapid contemporary adaptive evolution in wild animals},
	volume = {376},
	url = {https://www.science.org/doi/10.1126/science.abk0853},
	doi = {10.1126/science.abk0853},
	number = {6596},
	urldate = {2022-06-03},
	journal = {Science},
	author = {Bonnet, Timoth{\'e}e and Morrissey, Michael B. and de Villemereuil, Pierre and Alberts, Susan C. and Arcese, Peter and Bailey, Liam D. and Boutin, Stan and Brekke, Patricia and Brent, Lauren J. N. and Camenisch, Glauco and Charmantier, Anne and Clutton-Brock, Tim H. and Cockburn, Andrew and Coltman, David W. and Courtiol, Alexandre and Davidian, Eve and Evans, Simon R. and Ewen, John G. and Festa-Bianchet, Marco and de Franceschi, Christophe and Gustafsson, Lars and H{\"o}ner, Oliver P. and Houslay, Thomas M. and Keller, Lukas F. and Manser, Marta and McAdam, Andrew G. and McLean, Emily and Nietlisbach, Pirmin and Osmond, Helen L. and Pemberton, Josephine M. and Postma, Erik and Reid, Jane M. and Rutschmann, Alexis and Santure, Anna W. and Sheldon, Ben C. and Slate, Jon and Teplitsky, C{\'e}line and Visser, Marcel E. and Wachter, Bettina and Kruuk, Loeske E. B.},
	month = may,
	year = {2022},
	note = {Publisher: American Association for the Advancement of Science},
	keywords = {dzg\_conservation\_degradation, dzg\_methods\_quantitative, dzg\_taxon\_bird, dzg\_taxon\_carnivore, dzg\_taxon\_primate, dzg\_taxon\_rodent, dzg\_taxon\_ungulate, dzg\_traits\_fitness},
	pages = {1012--1016},
	file = {Bonnet et al. - 2022 - Genetic variance in fitness indicates rapid contem.pdf:/home/alex/Zotero/storage/4Y5L6J2W/Bonnet et al. - 2022 - Genetic variance in fitness indicates rapid contem.pdf:application/pdf},
}

@article{bailey_bird_2022,
	title = {Bird populations most exposed to climate change are less sensitive to climatic variation},
	volume = {13},
	issn = {2041-1723},
	url = {https://www.nature.com/articles/s41467-022-29635-4},
	doi = {10.1038/s41467-022-29635-4},
	abstract = {Abstract
            
              The phenology of many species shows strong sensitivity to climate change; however, with few large scale intra-specific studies it is unclear how such sensitivity varies over a species{\textquoteright} range. We document large intra-specific variation in phenological sensitivity to temperature using laying date information from 67 populations of two co-familial European songbirds, the great tit (
              Parus major
              ) and blue tit (
              Cyanistes caeruleus
              ), covering a large part of their breeding range. Populations inhabiting deciduous habitats showed stronger phenological sensitivity than those in evergreen and mixed habitats. However, populations with higher sensitivity tended to have experienced less rapid change in climate over the past decades, such that populations with high phenological sensitivity will not necessarily exhibit the strongest phenological advancement. Our results show that to effectively assess the impact of climate change on phenology across a species{\textquoteright} range it will be necessary to account for intra-specific variation in phenological sensitivity, climate change exposure, and the ecological characteristics of a population.},
	language = {en},
	number = {1},
	urldate = {2022-05-06},
	journal = {Nature Communications},
	author = {Bailey, Liam D. and van de Pol, Martijn and Adriaensen, Frank and Arct, Aneta and Barba, Emilio and Bellamy, Paul E. and Bonamour, Suzanne and Bouvier, Jean-Charles and Burgess, Malcolm D. and Charmantier, Anne and Cusimano, Camillo and Doligez, Blandine and Drobniak, Szymon M. and Dubiec, Anna and Eens, Marcel and Eeva, Tapio and Ferns, Peter N. and Goodenough, Anne E. and Hartley, Ian R. and Hinsley, Shelley A. and Ivankina, Elena and Ju{\v s}kaitis, Rimvydas and Kempenaers, Bart and Kerimov, Anvar B. and Lavigne, Claire and Leivits, Agu and Mainwaring, Mark C. and Matthysen, Erik and Nilsson, Jan-{\r A}ke and Orell, Markku and Rytk{\"o}nen, Seppo and Senar, Juan Carlos and Sheldon, Ben C. and Sorace, Alberto and Stenning, Martyn J. and T{\"o}r{\"o}k, J{\'a}nos and van Oers, Kees and Vatka, Emma and Vriend, Stefan J. G. and Visser, Marcel E.},
	month = dec,
	year = {2022},
	keywords = {dzg\_taxon\_bird, dzg\_best, dzg\_traits\_climate, dzg\_conservation\_climate},
	pages = {2112},
	file = {Full Text:/home/alex/Zotero/storage/XPW9IF44/Bailey et al. - 2022 - Bird populations most exposed to climate change ar.pdf:application/pdf},
}

@article{appleton_protected_2022,
	title = {Protected area personnel and ranger numbers are insufficient to deliver global expectations},
	copyright = {2022 The Author(s)},
	issn = {2398-9629},
	url = {https://www.nature.com/articles/s41893-022-00970-0},
	doi = {10.1038/s41893-022-00970-0},
	abstract = {The 2020 global spatial targets for protected areas set by the Convention on Biological Diversity have almost been achieved, but management effectiveness remains deficient. Personnel shortages are widely cited as major contributing factors but have not previously been quantified. Using data from 176 countries and territories, we estimate a current maximum of 555,000 terrestrial protected area personnel worldwide (one per 37 km2), including 286,000 rangers (one per 72 km2), far short of published guidance on required densities. Expansion by 2030 to 30\% coverage of protected areas and other effective area-based conservation measures is widely agreed as a minimum for safeguarding biodiversity and ecosystem services. We project that effective management of this expanded system will require approximately 3 million personnel (one per 13 km2), including more than 1.5 million rangers or equivalents (one per 26 km2). Parallel improvements in resourcing, working conditions and capacity are required for effective, equitable and sustainable management.},
	language = {en},
	urldate = {2022-11-08},
	journal = {Nature Sustainability},
	author = {Appleton, Michael R. and Courtiol, Alexandre and Emerton, Lucy and Slade, James L. and Tilker, Andrew and Warr, Lauren C. and Malvido, M{\'o}nica {\'A}lvarez and Barborak, James R. and de Bruin, Louise and Chapple, Rosalie and Daltry, Jennifer C. and Hadley, Nina P. and Jordan, Christopher A. and Rousset, Fran{\c c}ois and Singh, Rohit and Sterling, Eleanor J. and Wessling, Erin G. and Long, Barney},
	month = oct,
	year = {2022},
	note = {Publisher: Nature Publishing Group},
	keywords = {Conservation biology, dzg\_conservation\_management, Ecosystem services, Interdisciplinary studies, Sustainability, dzg\_taxon\_none},
	pages = {1--11},
	file = {Full Text PDF:/home/alex/Zotero/storage/VSLRZGEQ/Appleton et al. - 2022 - Protected area personnel and ranger numbers are in.pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/SKLMAISJ/s41893-022-00970-0.html:text/html},
}

@article{li_monitoring_2023,
	title = {Monitoring terrestrial wildlife by combining hybridization capture and metabarcoding data from waterhole environmental {DNA}},
	volume = {284},
	issn = {0006-3207},
	url = {https://www.sciencedirect.com/science/article/pii/S0006320723002690},
	doi = {10.1016/j.biocon.2023.110168},
	abstract = {In conservation science, observation-based methods are generally applied to wildlife monitoring. While useful, such approaches are often restricted to well-characterized and conspicuous species. Environmental DNA (eDNA) can complement observation-dependent surveys, as sample collection is generally less labor-intensive. Furthermore, eDNA can be used to simultaneously detect multiple taxa in various habitats. Most eDNA applications rely on short PCR product-based meta-barcoding approaches. However, such approaches may be less robust when applied to genetically uncharacterized species. Hybridization capture techniques while less sensitive than metabarcoding, can identifying divergent sequences, especially those obtained from highly degraded DNA. To assess eDNA based methods for surveillance in a conservation context, we collected samples during the dry season from randomly selected waterholes from a protected area in eastern Cambodia. We applied both hybridization capture enrichment and metabarcoding targeting mammal mitogenomes to water (N~=~46) and sediment (N~=~10) samples. Seventeen species were detected, including 11 mammals, three amphibians, two reptiles, and one bird. Six species overlapped between the two applied methods. Seven species were hybridization capture-specific detections, and four were metabarcoding-specific. Metabarcoding was more sensitive to abundant or large body-size species while hybridization capture provided more mitogenomic information. While both methods have some advantages over observational approaches, combining them may improve the sensitivity, number of species detected and amount of genetic information obtained from eDNA. We demonstrate that eDNA from tropical forest waterholes can be used to determine the presence of wildlife that may be difficult to detect using other observational approaches.},
	language = {en},
	urldate = {2023-07-07},
	journal = {Biological Conservation},
	author = {Li, Juan and Seeber, Peter and Axtner, Jan and Crouthers, Rachel and Groenenberg, Milou and Koehncke, Arnulf and Courtiol, Alexandre and Chanratana, Pin and Greenwood, Alex D.},
	month = aug,
	year = {2023},
	keywords = {dzg\_methods\_genomics, dzg\_methods\_noninvasive, eDNA, Hybridization capture, Metabarcoding, Terrestrial animals},
	pages = {110168},
	file = {Li et al. - 2023 - Monitoring terrestrial wildlife by combining hybri.pdf:/home/alex/Zotero/storage/C6UCRAHA/Li et al. - 2023 - Monitoring terrestrial wildlife by combining hybri.pdf:application/pdf;ScienceDirect Snapshot:/home/alex/Zotero/storage/P3YWY6HY/S0006320723002690.html:text/html},
}

@article{wetzel_pup_2023,
	title = {Pup recruitment in a eusocial mammal{\textemdash}{Which} factors influence early pup survival in naked mole-rats?},
	volume = {13},
	copyright = {http://creativecommons.org/licenses/by/3.0/},
	issn = {2076-2615},
	url = {https://www.mdpi.com/2076-2615/13/4/630},
	doi = {10.3390/ani13040630},
	abstract = {In eusocial insects, offspring survival strongly depends on the quality and quantity of non-breeders. In contrast, the influence of social factors on offspring survival is more variable in cooperatively breeding mammals since maternal traits also play an important role. This difference between cooperative insects and mammals is generally attributed to the difference in the level of sociality. Examining offspring survival in eusocial mammals should, therefore, clarify to what extent social organization and taxonomic differences determine the relative contribution of non-breeders and maternal effects to offspring survival. Here, we present the first in-depth and long-term study on the influence of individual, maternal, social and environmental characteristics on early offspring survival in a eusocial breeding mammal, the naked mole-rat (Heterocephalus glaber). Similarly to other mammals, pup birth mass and maternal characteristics such as body mass and the number of mammae significantly affected early pup survival. In this eusocial species, the number of non-breeders had a significant influence on early pup survival, but this influence was negative{\textemdash}potentially an artifact of captivity. By contrasting our findings with known determinants of survival in eusocial insects we contribute to a better understanding of the origin and maintenance of eusociality in mammals.},
	language = {en},
	number = {4},
	urldate = {2023-02-11},
	journal = {Animals},
	author = {Wetzel, Michaela and Courtiol, Alexandre and Hofer, Heribert and Holtze, Susanne and Hildebrandt, Thomas B.},
	month = jan,
	year = {2023},
	note = {Number: 4
Publisher: Multidisciplinary Digital Publishing Institute},
	keywords = {\textit{Heterocephalus glaber}, Bathyergidae, cooperative breeding, dzg\_taxon\_rodent, dzg\_traits\_lifespan, eusociality, naked mole-rat, offspring survival},
	pages = {630},
	file = {Full Text PDF:/home/alex/Zotero/storage/AMDGFJ7Q/Wetzel et al. - 2023 - Pup Recruitment in a Eusocial Mammal{\textemdash}Which Factors.pdf:application/pdf},
}

@article{culina_connecting_2021,
	title = {Connecting the data landscape of long-term ecological studies: {The} {SPI}-{Birds} data hub},
	volume = {90},
	issn = {1365-2656},
	shorttitle = {Connecting the data landscape of long-term ecological studies},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/1365-2656.13388},
	doi = {10.1111/1365-2656.13388},
	abstract = {The integration and synthesis of the data in different areas of science is drastically slowed and hindered by a lack of standards and networking programmes. Long-term studies of individually marked animals are not an exception. These studies are especially important as instrumental for understanding evolutionary and ecological processes in the wild. Furthermore, their number and global distribution provides a unique opportunity to assess the generality of patterns and to address broad-scale global issues (e.g. climate change). To solve data integration issues and enable a new scale of ecological and evolutionary research based on long-term studies of birds, we have created the SPI-Birds Network and Database (www.spibirds.org){\textemdash}a large-scale initiative that connects data from, and researchers working on, studies of wild populations of individually recognizable (usually ringed) birds. Within year and a half since the establishment, SPI-Birds has recruited over 120 members, and currently hosts data on almost 1.5 million individual birds collected in 80 populations over 2,000 cumulative years, and counting. SPI-Birds acts as a data hub and a catalogue of studied populations. It prevents data loss, secures easy data finding, use and integration and thus facilitates collaboration and synthesis. We provide community-derived data and meta-data standards and improve data integrity guided by the principles of Findable, Accessible, Interoperable and Reusable (FAIR), and aligned with the existing metadata languages (e.g. ecological meta-data language). The encouraging community involvement stems from SPI-Bird's decentralized approach: research groups retain full control over data use and their way of data management, while SPI-Birds creates tailored pipelines to convert each unique data format into a standard format. We outline the lessons learned, so that other communities (e.g. those working on other taxa) can adapt our successful model. Creating community-specific hubs (such as ours, COMADRE for animal demography, etc.) will aid much-needed large-scale ecological data integration.},
	language = {en},
	number = {9},
	urldate = {2022-04-11},
	journal = {Journal of Animal Ecology},
	author = {Culina, Antica and Adriaensen, Frank and Bailey, Liam D. and Burgess, Malcolm D. and Charmantier, Anne and Cole, Ella F. and Eeva, Tapio and Matthysen, Erik and Nater, Chlo{\'e} R. and Sheldon, Ben C. and S{\ae}ther, Bernt-Erik and Vriend, Stefan J. G. and Zajkova, Zuzana and Adam{\'i}k, Peter and Aplin, Lucy M. and Angulo, Elena and Artemyev, Alexandr and Barba, Emilio and Bari{\v s}i{\'c}, Sanja and Belda, Eduardo and Bilgin, Cemal Can and Bleu, Josefa and Both, Christiaan and Bouwhuis, Sandra and Branston, Claire J. and Broggi, Juli and Burke, Terry and Bushuev, Andrey and Camacho, Carlos and Campobello, Daniela and Canal, David and Cantarero, Alejandro and Caro, Samuel P. and Cauchoix, Maxime and Chaine, Alexis and Cicho{\'n}, Mariusz and {\'C}ikovi{\'c}, Davor and Cusimano, Camillo A. and Deimel, Caroline and Dhondt, Andr{\'e} A. and Dingemanse, Niels J. and Doligez, Blandine and Dominoni, Davide M. and Doutrelant, Claire and Drobniak, Szymon M. and Dubiec, Anna and Eens, Marcel and Einar Erikstad, Kjell and Esp{\'i}n, Silvia and Farine, Damien R. and Figuerola, Jordi and Kavak G{\"u}lbeyaz, P{\i}nar and Gr{\'e}goire, Arnaud and Hartley, Ian R. and Hau, Michaela and Hegyi, Gergely and Hille, Sabine and Hinde, Camilla A. and Holtmann, Benedikt and Ilyina, Tatyana and Isaksson, Caroline and Iserbyt, Arne and Ivankina, Elena and Kania, Wojciech and Kempenaers, Bart and Kerimov, Anvar and Komdeur, Jan and Korsten, Peter and Kr{\'a}l, Miroslav and Krist, Milo{\v s} and Lambrechts, Marcel and Lara, Carlos E. and Leivits, Agu and Liker, Andr{\'a}s and Lodjak, Jaanis and M{\"a}gi, Marko and Mainwaring, Mark C. and M{\"a}nd, Raivo and Massa, Bruno and Massemin, Sylvie and Mart{\'i}nez-Padilla, Jes{\'u}s and Mazgajski, Tomasz D. and Mennerat, Ad{\`e}le and Moreno, Juan and Mouchet, Alexia and Nakagawa, Shinichi and Nilsson, Jan-{\r A}ke and Nilsson, Johan F. and Cl{\'a}udia Norte, Ana and van Oers, Kees and Orell, Markku and Potti, Jaime and Quinn, John L. and R{\'e}ale, Denis and Kristin Reiertsen, Tone and Rosivall, Bal{\'a}zs and Russell, Andrew F and Rytk{\"o}nen, Seppo and S{\'a}nchez-Virosta, Pablo and Santos, Eduardo S. A. and Schroeder, Julia and Senar, Juan Carlos and Seress, G{\'a}bor and Slagsvold, Tore and Szulkin, Marta and Teplitsky, C{\'e}line and Tilgar, Vallo and Tolstoguzov, Andrey and T{\"o}r{\"o}k, J{\'a}nos and Valcu, Mihai and Vatka, Emma and Verhulst, Simon and Watson, Hannah and Yuta, Teru and Zamora-Mar{\'i}n, Jos{\'e} M. and Visser, Marcel E.},
	year = {2021},
	keywords = {birds, data standards, database, FAIR data, long-term studies, meta-data standards, research network, dzg\_taxon\_bird, dzg\_best, dzg\_methods\_databases},
	pages = {2147--2160},
	file = {Full Text PDF:/home/alex/Zotero/storage/QTF8K6CR/Culina et al. - 2021 - Connecting the data landscape of long-term ecologi.pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/6UNLY3CF/Culina et al. - 2021 - Connecting the data landscape of long-term ecologi.html:text/html},
}

@article{azevedo_decreasing_2021,
	title = {Decreasing glucocorticoid levels towards the expansion front suggest ongoing expansion in a terrestrial mammal},
	volume = {9},
	issn = {2051-1434},
	url = {https://academic.oup.com/conphys/article/doi/10.1093/conphys/coab050/6313323},
	doi = {10.1093/conphys/coab050},
	abstract = {Abstract 
            Understanding the causes of range expansions in abundant species can help predict future species distributions. During range expansions, animals are exposed to novel environments and are required to cope with new and unpredictable stressors. Glucocorticoids (GCs) are mediators of the hormonal and behavioural mechanisms allowing animals to cope with unpredictable changes in the environment and are therefore expected to differ between populations at expansion edge and the historic range. However, to date, very few studies have evaluated the relationship between GCs and range expansion. The Egyptian mongoose has been rapidly expanding its range in Portugal over the past 30~years. In this study, we applied an information theoretic approach to determine the most important spatial and environmental predictors of hair GCs (hGCs) in the population, after controlling for normal patterns of hGC variation in the species. We observed a decrease in hGC as distance from the historic range increased (i.e. closer to the expansion front). This distance term was present in all of the top models and had a 95\% confidence interval (95\% CI) that did not overlap with zero, strongly supporting its influence on hGC. We estimated a 0.031~pg/mg (95\% CI: -0.057, -0.004) decrease in hGCs for each kilometre distance to the Tagus River, which was once the limit of the species{\textquoteright} distribution. Our results indicate that the species{\textquoteright} expansion is unlikely to be limited by mechanisms related to or mediated by the physiological stress response. The decrease in hGC levels towards the expansion edge coupled with limited evidence of a negative effect of human population density suggests that the species{\textquoteright} northward expansion in Portugal could continue.},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Conservation Physiology},
	author = {Azevedo, Alexandre and Bailey, Liam and Bandeira, Victor and Fonseca, Carlos and Wauters, Jella and Jewgenow, Katarina},
	editor = {Cooke, Steven},
	month = jan,
	year = {2021},
	keywords = {dzg\_taxon\_carnivore, dzg\_health\_immunity},
	pages = {coab050},
	file = {Full Text:/home/alex/Zotero/storage/A3LGP3LM/Azevedo et al. - 2021 - Decreasing glucocorticoid levels towards the expan.pdf:application/pdf},
}

@article{dayaram_seasonal_2021,
	title = {Seasonal host and ecological drivers may promote restricted water as a viral vector},
	volume = {773},
	issn = {00489697},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969721005143},
	doi = {10.1016/j.scitotenv.2021.145446},
	language = {en},
	urldate = {2022-04-04},
	journal = {Science of The Total Environment},
	author = {Dayaram, Anisha and Seeber, Peter and Courtiol, Alexandre and Soilemetzidou, Sanatana and Tsangaras, Kyriakos and Franz, Mathias and McEwen, Gayle K. and Azab, Walid and Kaczensky, Petra and Melzheimer, J{\"o}rg and East, Marion L. and Ganbaatar, Oyunsaikhan and Walzer, Christian and Osterrieder, Nikolaus and Greenwood, Alex D.},
	month = jun,
	year = {2021},
	keywords = {dzg\_taxon\_ungulate, dzg\_health\_diseases, dzg\_taxon\_virus},
	pages = {145446},
	file = {Dayaram.2021.Watersesaonalvirusvector.pdf:/home/alex/Zotero/storage/QGH8SNJU/Dayaram.2021.Watersesaonalvirusvector.pdf:application/pdf},
}

@article{kruszynski_identifying_2021,
	title = {Identifying migratory pathways of {Nathusius}' pipistrelles ( \textit{{Pipistrellus} nathusii} ) using stable hydrogen and strontium isotopes},
	volume = {35},
	issn = {0951-4198, 1097-0231},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/rcm.9031},
	doi = {10.1002/rcm.9031},
	language = {en},
	number = {6},
	urldate = {2022-04-04},
	journal = {Rapid Communications in Mass Spectrometry},
	author = {Kruszynski, Cecilia and Bailey, Liam D. and Courtiol, Alexandre and Bach, Lothar and Bach, Petra and G{\"o}ttsche, Matthias and G{\"o}ttsche, Michael and Hill, Reinhold and Lindecke, Oliver and Matthes, Hinrich and Pommeranz, Henrik and Popa-Lisseanu, Ana G. and Seebens-Hoyer, Antje and Tichomirowa, Marion and Voigt, Christian C.},
	month = mar,
	year = {2021},
	keywords = {dzg\_taxon\_bat, dzg\_behaviour\_migration},
	file = {Rapid Comm Mass Spectrometry - 2020 - Kruszynski - Identifying migratory pathways of Nathusius  pipistrelles  Pipistrellus.pdf:/home/alex/Zotero/storage/DPVXX2FY/Rapid Comm Mass Spectrometry - 2020 - Kruszynski - Identifying migratory pathways of Nathusius  pipistrelles  Pipistrellus.pdf:application/pdf},
}

@article{tonnabel_sexspecific_2021,
	title = {Sex-specific spatial variation in fitness in the highly dimorphic \textit{{Leucadendron} rubrum}},
	volume = {30},
	issn = {0962-1083, 1365-294X},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/mec.15833},
	doi = {10.1111/mec.15833},
	language = {en},
	number = {7},
	urldate = {2022-04-04},
	journal = {Molecular Ecology},
	author = {Tonnabel, Jeanne and Klein, Etienne K. and Ronce, Oph{\'e}lie and Oddou-Muratorio, Sylvie and Rousset, Fran{\c c}ois and Olivieri, Isabelle and Courtiol, Alexandre and Mignot, Agn{\`e}s},
	month = apr,
	year = {2021},
	keywords = {dzg\_traits\_fitness, dzg\_taxon\_plant},
	pages = {1721--1735},
	file = {Molecular Ecology - 2021 - Tonnabel - Sex-specific spatial variation in fitness in the highly dimorphic Leucadendron rubrum.pdf:/home/alex/Zotero/storage/GTLHNNXK/Molecular Ecology - 2021 - Tonnabel - Sex-specific spatial variation in fitness in the highly dimorphic Leucadendron rubrum.pdf:application/pdf},
}

@article{wilting_planning_2015,
	title = {Planning tiger recovery: {Understanding} intraspecific variation for effective conservation},
	volume = {1},
	issn = {2375-2548},
	shorttitle = {Planning tiger recovery},
	url = {https://www.science.org/doi/10.1126/sciadv.1400175},
	doi = {10.1126/sciadv.1400175},
	abstract = {Radical revision of tiger taxonomy for a pragmatic and scientifically sound approach to tiger conservation management. 
          ,  
             
              Although significantly more money is spent on the conservation of tigers than on any other threatened species, today only 3200 to 3600 tigers roam the forests of Asia, occupying only 7\% of their historical range. Despite the global significance of and interest in tiger conservation, global approaches to plan tiger recovery are partly impeded by the lack of a consensus on the number of tiger subspecies or management units, because a comprehensive analysis of tiger variation is lacking. We analyzed variation among all nine putative tiger subspecies, using extensive data sets of several traits [morphological (craniodental and pelage), ecological, molecular]. Our analyses revealed little variation and large overlaps in each trait among putative subspecies, and molecular data showed extremely low diversity because of a severe Late Pleistocene population decline. Our results support recognition of only two subspecies: the Sunda tiger, 
              Panthera tigris sondaica, 
              and the continental tiger, 
              Panthera tigris tigris 
              , which consists of two (northern and southern) management units. Conservation management programs, such as captive breeding, reintroduction initiatives, or trans-boundary projects, rely on a durable, consistent characterization of subspecies as taxonomic units, defined by robust multiple lines of scientific evidence rather than single traits or ad hoc descriptions of one or few specimens. Our multiple-trait data set supports a fundamental rethinking of the conventional tiger taxonomy paradigm, which will have profound implications for the management of in situ and ex situ tiger populations and boost conservation efforts by facilitating a pragmatic approach to tiger conservation management worldwide.},
	language = {en},
	number = {5},
	urldate = {2022-04-04},
	journal = {Science Advances},
	author = {Wilting, Andreas and Courtiol, Alexandre and Christiansen, Per and Niedballa, J{\"u}rgen and Scharf, Anne K. and Orlando, Ludovic and Balkenhol, Niko and Hofer, Heribert and Kramer-Schadt, Stephanie and Fickel, J{\"o}rns and Kitchener, Andrew C.},
	month = jun,
	year = {2015},
	keywords = {dzg\_taxon\_carnivore, dzg\_conservation\_management},
	pages = {e1400175},
	file = {sciadv.1400175.pdf:/home/alex/Zotero/storage/USQ9UV7F/sciadv.1400175.pdf:application/pdf},
}

@article{saragusty_sperm_2016,
	title = {Sperm rescue in wild {African} elephants},
	volume = {28},
	issn = {1031-3613},
	url = {http://www.publish.csiro.au/?paper=RD14378},
	doi = {10.1071/RD14378},
	abstract = {This study investigated ways of improving the usefulness of {\textasciitilde}1700 mL of poor-quality frozen semen collected from wild African elephant (Loxodonta africana) bulls. Ten semen samples from six bulls, frozen with 5\% glycerol in Berliner cryomedium, with or without prior removal of the seminal plasma by centrifugation, were tested. All samples were subjected to the following density-gradient centrifugation treatments: no centrifugation (control), sham centrifugation, Percoll, OptiPrep, Isolate and PureSperm. Sample evaluation included motility, concentration, viability, acrosome integrity and normal morphology after thawing and after gradient centrifugation. Motility was also evaluated 3 h after thawing. While all treatments were similar to the Control in acrosome integrity and normal morphology, significant differences were noted in concentration, viability and motility. Samples treated by Percoll showed the best motility, which was maintained unchanged over 3 h of incubation (37{\textdegree}C). Correlations between manual and automated evaluations of concentration were high (cytometer; rho = 0.92), but were lower for viability (cytometer; rho = 0.57) and motility (computer-aided sperm analysis; rho = 0.66). By performing density centrifugation, the quality of these sperm samples may be improved to a level suitable for artificial insemination in elephants. Although a sizeable proportion of cells are lost in the process, combining samples may still allow for multiple inseminations.},
	language = {en},
	number = {9},
	urldate = {2022-04-04},
	journal = {Reproduction, Fertility and Development},
	author = {Saragusty, Joseph and Prieto, Mar{\'i}a Teresa and Courtiol, Alexandre and Potier, Romain and G{\"o}ritz, Frank and Hildebrandt, Thomas B. and Hermes, Robert},
	year = {2016},
	keywords = {dzg\_methods\_genomics, dzg\_conservation\_management, dzg\_taxon\_elephant},
	pages = {1433},
	file = {Saragusty_et_al_2015.pdf:/home/alex/Zotero/storage/WLEARJN5/Saragusty_et_al_2015.pdf:application/pdf},
}

@article{hryciuk_functional_2019,
	title = {Functional and morphological characterization of small and large steroidogenic luteal cells from domestic cats before and during culture},
	volume = {10},
	issn = {1664-2392},
	url = {https://www.frontiersin.org/article/10.3389/fendo.2019.00724/full},
	doi = {10.3389/fendo.2019.00724},
	urldate = {2022-04-04},
	journal = {Frontiers in Endocrinology},
	author = {Hryciuk, Micha{\l } M. and Braun, Beate C. and Bailey, Liam D. and Jewgenow, Katarina},
	month = nov,
	year = {2019},
	keywords = {dzg\_taxon\_carnivore, dzg\_methods\_genomics, dzg\_conservation\_management},
	pages = {724},
	file = {Full Text:/home/alex/Zotero/storage/VG59DHT3/Hryciuk et al. - 2019 - Functional and Morphological Characterization of S.pdf:application/pdf},
}

@article{eder_equilibration_2020,
	title = {Equilibration in freezing extender alters in vitro sperm{\textendash}oviduct binding in the domestic cat ({Felis} catus)},
	volume = {149},
	issn = {0093691X},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0093691X20301837},
	doi = {10.1016/j.theriogenology.2020.03.017},
	language = {en},
	urldate = {2022-04-04},
	journal = {Theriogenology},
	author = {Eder, Susanne and Bailey, Liam D. and M{\"u}ller, Karin},
	month = jun,
	year = {2020},
	keywords = {dzg\_taxon\_carnivore, dzg\_methods\_genomics, dzg\_conservation\_management},
	pages = {79--87},
	file = {Eder et al. - 2020 - Equilibration in freezing extender alters in vitro.pdf:/home/alex/Zotero/storage/B5TUZWD4/Eder et al. - 2020 - Equilibration in freezing extender alters in vitro.pdf:application/pdf},
}

@article{kretzschmar_mate_2020,
	title = {Mate choice, reproductive success and inbreeding in white rhinoceros: {New} insights for conservation management},
	volume = {13},
	issn = {1752-4571, 1752-4571},
	shorttitle = {Mate choice, reproductive success and inbreeding in white rhinoceros},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/eva.12894},
	doi = {10.1111/eva.12894},
	language = {en},
	number = {4},
	urldate = {2022-04-04},
	journal = {Evolutionary Applications},
	author = {Kretzschmar, Petra and Auld, Hailie and Boag, Peter and Ganslo{\ss}er, Udo and Scott, Candace and Van Coeverden de Groot, Peter John and Courtiol, Alexandre},
	month = apr,
	year = {2020},
	keywords = {dzg\_taxon\_ungulate, dzg\_conservation\_management, dzg\_behaviour\_matechoice},
	pages = {699--714},
	file = {Evolutionary Applications - 2019 - Kretzschmar - Mate choice  reproductive success and inbreeding in white rhinoceros  New.pdf:/home/alex/Zotero/storage/3C2YVDAV/Evolutionary Applications - 2019 - Kretzschmar - Mate choice  reproductive success and inbreeding in white rhinoceros  New.pdf:application/pdf},
}

@article{rickard_intergenerational_2012,
	title = {Intergenerational effects of maternal birth season on offspring size in rural {Gambia}},
	doi = {https://doi.org/10.1098/rspb.2012.1363},
	journal = {Proceedings of the Royal Society series B},
	author = {Rickard, Ian J. and Courtiol, A and Prentice, A and Fulford, A and Clutton-Brock, T and Lummaa, V},
	year = {2012},
	keywords = {dzg\_taxon\_primate, dzg\_traits\_climate},
	file = {Full Text:/home/alex/Zotero/storage/NABTXSFD/Rickard et al. - 2012 - Intergenerational effects of maternal birth season.pdf:application/pdf},
}

@article{courtiol_modelling_2017,
	title = {Modelling isoscapes using mixed models},
	doi = {https://doi.org/10.1101/207662},
	journal = {BioRxiv},
	author = {Courtiol, Alexandre and Rousset, Fran{\c c}ois},
	year = {2017},
	note = {Publisher: Cold Spring Harbor Laboratory},
	keywords = {dzg\_methods\_quantitative, dzg\_behaviour\_migration, dzg\_taxon\_none},
	pages = {207662},
	file = {Full Text:/home/alex/Zotero/storage/77U5NXUX/Courtiol and Rousset - 2017 - Modelling isoscapes using mixed models.pdf:application/pdf},
}

@article{rousset_summary-likelihood_2017,
	title = {The summary-likelihood method and its implementation in the {Infusion} package},
	volume = {17},
	issn = {1755098X},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12627},
	doi = {10.1111/1755-0998.12627},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Molecular Ecology Resources},
	author = {Rousset, Fran{\c c}ois and Gouy, Alexandre and Martinez-Almoyna, Camille and Courtiol, Alexandre},
	month = jan,
	year = {2017},
	keywords = {dzg\_methods\_quantitative, dzg\_methods\_packages, dzg\_taxon\_none},
	pages = {110--119},
	file = {Molecular Ecology Resources - 2016 - Rousset - The summary-likelihood method and its implementation in the Infusion package.pdf:/home/alex/Zotero/storage/A9YXSHQ7/Molecular Ecology Resources - 2016 - Rousset - The summary-likelihood method and its implementation in the Infusion package.pdf:application/pdf},
}

@article{franz_sicknessinduced_2018,
	title = {Sickness-induced lethargy can increase host contact rates and pathogen spread in water-limited landscapes},
	volume = {32},
	issn = {0269-8463, 1365-2435},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/1365-2435.13149},
	doi = {10.1111/1365-2435.13149},
	language = {en},
	number = {9},
	urldate = {2022-04-04},
	journal = {Functional Ecology},
	author = {Franz, Mathias and Kramer-Schadt, Stephanie and Greenwood, Alex D. and Courtiol, Alexandre},
	editor = {Pedersen, Amy},
	month = sep,
	year = {2018},
	keywords = {dzg\_taxon\_none, dzg\_health\_diseases},
	pages = {2194--2204},
	file = {Functional Ecology - 2018 - Franz - Sickness-induced lethargy can increase host contact rates and pathogen spread in.pdf:/home/alex/Zotero/storage/SNLP4X3P/Functional Ecology - 2018 - Franz - Sickness-induced lethargy can increase host contact rates and pathogen spread in.pdf:application/pdf},
}

@article{etienne_how_2014,
	title = {How choosy should {I} be? {The} relative searching time predicts evolution of choosiness under direct sexual selection},
	volume = {281},
	issn = {0962-8452, 1471-2954},
	shorttitle = {How choosy should {I} be?},
	url = {https://royalsocietypublishing.org/doi/10.1098/rspb.2014.0190},
	doi = {10.1098/rspb.2014.0190},
	abstract = {Most theoretical research in sexual selection has focused on indirect selection. However, empirical studies have not strongly supported indirect selection. A well-established finding is that direct benefits and costs exert a strong influence on the evolution of mate choice. We present an analytical model in which unilateral mate choice evolves solely by direct sexual selection on choosiness. We show this is sufficient to generate the evolution of all possible levels of choosiness, because of the fundamental trade-off between mating rate and mating benefits. We further identify the relative searching time (RST, i.e. the proportion of lifetime devoted to searching for mates) as a predictor of the effect of any variable affecting the mating rate on the evolution of choosiness. We show that the RST: (i) allows one to make predictions about the evolution of choosiness across a wide variety of mating systems; (ii) encompasses all alternative variables proposed thus far to explain the evolution of choosiness by direct sexual selection; and (iii) can be empirically used to infer qualitative differences in choosiness.},
	language = {en},
	number = {1785},
	urldate = {2022-04-04},
	journal = {Proceedings of the Royal Society B: Biological Sciences},
	author = {Etienne, Lo{\"i}c and Rousset, Fran{\c c}ois and Godelle, Bernard and Courtiol, Alexandre},
	month = jun,
	year = {2014},
	keywords = {dzg\_taxon\_none, dzg\_behaviour\_matechoice},
	pages = {20140190},
	file = {rspb.2014.0190.pdf:/home/alex/Zotero/storage/S6WSAHTE/rspb.2014.0190.pdf:application/pdf},
}

@article{courtiol_evolution_2016,
	title = {The evolution of mutual mate choice under direct benefits},
	volume = {188},
	issn = {0003-0147, 1537-5323},
	url = {https://www.journals.uchicago.edu/doi/10.1086/688658},
	doi = {10.1086/688658},
	language = {en},
	number = {5},
	urldate = {2022-04-04},
	journal = {The American Naturalist},
	author = {Courtiol, Alexandre and Etienne, Lo{\"i}c and Feron, Romain and Godelle, Bernard and Rousset, Fran{\c c}ois},
	month = nov,
	year = {2016},
	keywords = {dzg\_taxon\_none, dzg\_behaviour\_matechoice},
	pages = {521--538},
	file = {688658.pdf:/home/alex/Zotero/storage/WKC9E4C2/688658.pdf:application/pdf},
}

@article{numberger_recovery_2019,
	title = {Recovery of influenza {A} viruses from lake water and sediments by experimental inoculation},
	volume = {14},
	issn = {1932-6203},
	url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0216880},
	doi = {10.1371/journal.pone.0216880},
	abstract = {Influenza A viruses (IAV) are zoonotic pathogens relevant to human, domestic animal and wildlife health. Many avian IAVs are transmitted among waterfowl via a faecal-oral-route. Therefore, environmental water where waterfowl congregate may play an important role in the ecology and epidemiology of avian IAV. Water and sediment may sustain and transmit virus among individuals or species. It is unclear at what concentrations waterborne viruses are infectious or remain detectable. To address this, we performed lake water and sediment dilution experiments with varying concentrations or infectious doses of four IAV strains from seal, turkey, duck and gull. To test for infectivity of the IAV strains in a concentration dependent manner, we applied cultivation to specific pathogen free (SPF) embryonated chicken eggs and Madin-Darby Canine Kidney (MDCK) cells. IAV recovery was more effective from embryonated chicken eggs than MDCK cells for freshwater lake dilutions, whereas, MDCK cells were more effective for viral recovery from sediment samples. Low infectious dose (1 PFU/200 $\mu$L) was sufficient in most cases to detect and recover IAV from lake water dilutions. Sediment required higher initial infectious doses (>= 100 PFU/200 $\mu$L).},
	language = {en},
	number = {5},
	urldate = {2022-05-03},
	journal = {PLOS ONE},
	author = {Numberger, Daniela and Dreier, Carola and Vullioud, Colin and Gabriel, G{\"u}lsah and Greenwood, Alex D. and Grossart, Hans-Peter},
	month = may,
	year = {2019},
	note = {Publisher: Public Library of Science},
	keywords = {dzg\_health\_diseases, dzg\_taxon\_virus, Chicken eggs, Fresh water, Hemagglutination, Influenza, Influenza A virus, Lakes, Sediment, Surface water},
	pages = {e0216880},
	file = {Full Text PDF:/home/alex/Zotero/storage/GM7Q7JFD/Numberger et al. - 2019 - Recovery of influenza A viruses from lake water an.pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/Z732QU2G/article.html:text/html},
}

@article{speck_cationic_2014,
	title = {Cationic synthetic peptides: {Assessment} of their antimicrobial potency in liquid preserved boar semen},
	volume = {9},
	issn = {1932-6203},
	shorttitle = {Cationic {Synthetic} {Peptides}},
	url = {https://dx.plos.org/10.1371/journal.pone.0105949},
	doi = {10.1371/journal.pone.0105949},
	language = {en},
	number = {8},
	urldate = {2022-04-04},
	journal = {PLoS ONE},
	author = {Speck, Stephanie and Courtiol, Alexandre and Junkes, Christof and Dathe, Margitta and M{\"u}ller, Karin and Schulze, Martin},
	editor = {Cloeckaert, Axel},
	month = aug,
	year = {2014},
	keywords = {dzg\_taxon\_ungulate},
	pages = {e105949},
	file = {cationic.pdf:/home/alex/Zotero/storage/B9MV3NJU/cationic.pdf:application/pdf},
}

@article{trinogga_fragmentation_2019,
	title = {Fragmentation of lead-free and lead-based hunting rifle bullets under real life hunting conditions in {Germany}},
	volume = {48},
	issn = {0044-7447, 1654-7209},
	url = {http://link.springer.com/10.1007/s13280-019-01168-z},
	doi = {10.1007/s13280-019-01168-z},
	language = {en},
	number = {9},
	urldate = {2022-04-04},
	journal = {Ambio},
	author = {Trinogga, Anna Lena and Courtiol, Alexandre and Krone, Oliver},
	month = sep,
	year = {2019},
	keywords = {dzg\_conservation\_degradation, dzg\_taxon\_ungulate},
	pages = {1056--1064},
	file = {Trinogga2019_Article_FragmentationOfLead-freeAndLea.pdf:/home/alex/Zotero/storage/EF38GHDB/Trinogga2019_Article_FragmentationOfLead-freeAndLea.pdf:application/pdf},
}

@article{sommer_mhc_2013,
	title = {{MHC} genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropout},
	volume = {14},
	issn = {1471-2164},
	shorttitle = {{MHC} genotyping of non-model organisms using next-generation sequencing},
	url = {http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-14-542},
	doi = {10.1186/1471-2164-14-542},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {BMC Genomics},
	author = {Sommer, Simone and Courtiol, Alexandre and Mazzoni, Camila J},
	year = {2013},
	keywords = {dzg\_methods\_quantitative, dzg\_taxon\_rodent, dzg\_methods\_genomics, dzg\_health\_MHC},
	pages = {542},
	file = {1471-2164-14-542.pdf:/home/alex/Zotero/storage/WKV4IYB6/1471-2164-14-542.pdf:application/pdf},
}

@article{tian_circulating_2015,
	title = {Circulating white blood cell counts in captive and wild rodents are influenced by body mass rather than testes mass, a correlate of mating promiscuity},
	volume = {29},
	issn = {0269-8463, 1365-2435},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/1365-2435.12394},
	doi = {10.1111/1365-2435.12394},
	language = {en},
	number = {6},
	urldate = {2022-04-04},
	journal = {Functional Ecology},
	author = {Tian, Jundong and Courtiol, Alexandre and Schneeberger, Karin and Greenwood, Alex D. and Czirj{\'a}k, G{\'a}bor {\'A}.},
	editor = {Piersma, Theunis},
	month = jun,
	year = {2015},
	keywords = {dzg\_taxon\_rodent, dzg\_health\_immunity},
	pages = {823--829},
	file = {Functional Ecology - 2015 - Tian - Circulating white blood cell counts in captive and wild rodents are influenced by body.pdf:/home/alex/Zotero/storage/XMQ7WJNH/Functional Ecology - 2015 - Tian - Circulating white blood cell counts in captive and wild rodents are influenced by body.pdf:application/pdf},
}

@article{pettay_effects_2014,
	title = {Effects of remarriage after widowhood on long-term fitness in a monogamous historical human population},
	volume = {68},
	issn = {0340-5443, 1432-0762},
	url = {http://link.springer.com/10.1007/s00265-013-1630-6},
	doi = {10.1007/s00265-013-1630-6},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Behavioral Ecology and Sociobiology},
	author = {Pettay, Jenni E and Rotkirch, Anna and Courtiol, Alexandre and Jokela, Markus and Lummaa, Virpi},
	month = jan,
	year = {2014},
	keywords = {dzg\_taxon\_primate, dzg\_traits\_fitness},
	pages = {135--143},
	file = {Pettay2014_Article_EffectsOfRemarriageAfterWidowh.pdf:/home/alex/Zotero/storage/KLHYQDAW/Pettay2014_Article_EffectsOfRemarriageAfterWidowh.pdf:application/pdf},
}

@article{cohen_relevance_2015,
	title = {The relevance of the side-view in body image scales for public health: an example from two {African} populations},
	volume = {15},
	issn = {1471-2458},
	shorttitle = {The relevance of the side-view in body image scales for public health},
	url = {http://bmcpublichealth.biomedcentral.com/articles/10.1186/s12889-015-2511-x},
	doi = {10.1186/s12889-015-2511-x},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {BMC Public Health},
	author = {Cohen, Emmanuel and Ndao, Amadou and Bo{\"e}tsch, Gilles and Gueye, Lamine and Pasquet, Patrick and Holdsworth, Michelle and Courtiol, Alexandre},
	month = dec,
	year = {2015},
	keywords = {dzg\_taxon\_primate, dzg\_behaviour\_perception, dzg\_morphology\_diet},
	pages = {1169},
	file = {s12889-015-2511-x.pdf:/home/alex/Zotero/storage/M5V64XBM/s12889-015-2511-x.pdf:application/pdf},
}

@article{levrero_social_2015,
	title = {Social shaping of voices does not impair phenotype matching of kinship in mandrills},
	volume = {6},
	issn = {2041-1723},
	url = {http://www.nature.com/articles/ncomms8609},
	doi = {10.1038/ncomms8609},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Nature Communications},
	author = {Levr{\'e}ro, F. and Carrete-Vega, G. and Herbert, A. and Lawabi, I. and Courtiol, A. and Willaume, E. and Kappeler, P. M. and Charpentier, M.J.E.},
	month = nov,
	year = {2015},
	keywords = {dzg\_taxon\_primate, dzg\_behaviour\_perception},
	pages = {7609},
	file = {ncomms8609.pdf:/home/alex/Zotero/storage/W8HY9IDU/ncomms8609.pdf:application/pdf},
}

@article{courtiol_when_2016,
	title = {When genes and environment disagree: {Making} sense of trends in recent human evolution},
	volume = {113},
	issn = {0027-8424, 1091-6490},
	shorttitle = {When genes and environment disagree},
	url = {https://pnas.org/doi/full/10.1073/pnas.1608532113},
	doi = {10.1073/pnas.1608532113},
	language = {en},
	number = {28},
	urldate = {2022-04-04},
	journal = {Proceedings of the National Academy of Sciences},
	author = {Courtiol, Alexandre and Tropf, Felix C. and Mills, Melinda C.},
	month = jul,
	year = {2016},
	keywords = {dzg\_taxon\_primate, dzg\_traits\_fitness},
	pages = {7693--7695},
	file = {pnas.1608532113.pdf:/home/alex/Zotero/storage/VQNKNNR3/pnas.1608532113.pdf:application/pdf},
}

@article{courtiol_demographic_2013,
	title = {The demographic transition influences variance in fitness and selection on height and {BMI} in rural {Gambia}},
	volume = {23},
	issn = {09609822},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0960982213004144},
	doi = {10.1016/j.cub.2013.04.006},
	language = {en},
	number = {10},
	urldate = {2022-04-04},
	journal = {Current Biology},
	author = {Courtiol, Alexandre and Rickard, Ian~J. and Lummaa, Virpi and Prentice, Andrew~M. and Fulford, Anthony~J.C. and Stearns, Stephen~C.},
	month = may,
	year = {2013},
	keywords = {dzg\_taxon\_primate, dzg\_traits\_fitness, dzg\_traits\_demography},
	pages = {884--889},
	file = {1-s2.0-S0960982213004144-main.pdf:/home/alex/Zotero/storage/5KAQINZX/1-s2.0-S0960982213004144-main.pdf:application/pdf},
}

@article{courtiol_natural_2012,
	title = {Natural and sexual selection in a monogamous historical human population},
	volume = {109},
	doi = {https://doi.org/10.1073/pnas.1118174109},
	number = {21},
	journal = {Proceedings of the National Academy of Sciences},
	author = {Courtiol, Alexandre and Pettay, Jenni E and Jokela, Markus and Rotkirch, Anna and Lummaa, Virpi},
	year = {2012},
	note = {Publisher: National Academy of Sciences},
	keywords = {dzg\_taxon\_primate, dzg\_traits\_fitness},
	pages = {8044--8049},
	file = {Full Text:/home/alex/Zotero/storage/8QLV928P/Courtiol et al. - 2012 - Natural and sexual selection in a monogamous histo.pdf:application/pdf},
}

@article{corbett_transition_2018,
	title = {The transition to modernity and chronic disease: mismatch and natural selection},
	volume = {19},
	issn = {1471-0056, 1471-0064},
	shorttitle = {The transition to modernity and chronic disease},
	url = {http://www.nature.com/articles/s41576-018-0012-3},
	doi = {10.1038/s41576-018-0012-3},
	language = {en},
	number = {7},
	urldate = {2022-04-04},
	journal = {Nature Reviews Genetics},
	author = {Corbett, Stephen and Courtiol, Alexandre and Lummaa, Virpi and Moorad, Jacob and Stearns, Stephen},
	month = jul,
	year = {2018},
	keywords = {dzg\_taxon\_primate, dzg\_traits\_fitness, dzg\_best, dzg\_traits\_lifespan, dzg\_traits\_demography},
	pages = {419--430},
	file = {s41576-018-0012-3.pdf:/home/alex/Zotero/storage/H2HPMLE4/s41576-018-0012-3.pdf:application/pdf},
}

@article{alfano_variation_2015,
	title = {Variation in koala microbiomes within and between individuals: effect of body region and captivity status},
	volume = {5},
	issn = {2045-2322},
	shorttitle = {Variation in koala microbiomes within and between individuals},
	url = {http://www.nature.com/articles/srep10189},
	doi = {10.1038/srep10189},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Scientific Reports},
	author = {Alfano, Niccol{\'o} and Courtiol, Alexandre and Vielgrader, Hanna and Timms, Peter and Roca, Alfred L. and Greenwood, Alex D.},
	month = sep,
	year = {2015},
	keywords = {dzg\_health\_immunity, dzg\_taxon\_marsupial},
	pages = {10189},
	file = {srep10189.pdf:/home/alex/Zotero/storage/2V8RPXUR/srep10189.pdf:application/pdf},
}

@article{cui_comprehensive_2016,
	title = {Comprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genome},
	volume = {4},
	issn = {2167-8359},
	url = {https://peerj.com/articles/1847},
	doi = {10.7717/peerj.1847},
	abstract = {Background. 
              Retroviral integration into the host germline results in permanent viral colonization of vertebrate genomes. The koala retrovirus (KoRV) is currently invading the germline of the koala (Phascolarctos cinereus) and provides a unique opportunity for studying retroviral endogenization. Previous analysis of KoRV integration patterns in modern koalas demonstrate that they share integration sites primarily if they are related, indicating that the process is currently driven by vertical transmission rather than infection. However, due to methodological challenges, KoRV integrations have not been comprehensively characterized. 
             
             
              Results. 
              To overcome these challenges, we applied and compared three target enrichment techniques coupled with next generation sequencing (NGS) and a newly customized sequence-clustering based computational pipeline to determine the integration sites for 10 museum Queensland and New South Wales (NSW) koala samples collected between the 1870s and late 1980s. A secondary aim of this study sought to identify common integration sites across modern and historical specimens by comparing our dataset to previously published studies. Several million sequences were processed, and the KoRV integration sites in each koala were characterized. 
             
             
              Conclusions. 
              Although the three enrichment methods each exhibited bias in integration site retrieval, a combination of two methods, Primer Extension Capture and hybridization capture is recommended for future studies on historical samples. Moreover, identification of integration sites shows that the proportion of integration sites shared between any two koalas is quite small.},
	language = {en},
	urldate = {2022-04-04},
	journal = {PeerJ},
	author = {Cui, Pin and L{\"o}ber, Ulrike and Alquezar-Planas, David E. and Ishida, Yasuko and Courtiol, Alexandre and Timms, Peter and Johnson, Rebecca N. and Lenz, Dorina and Helgen, Kristofer M. and Roca, Alfred L. and Hartman, Stefanie and Greenwood, Alex D.},
	month = mar,
	year = {2016},
	keywords = {dzg\_taxon\_marsupial, dzg\_health\_diseases},
	pages = {e1847},
	file = {peerj-1847.pdf:/home/alex/Zotero/storage/YRISGIR6/peerj-1847.pdf:application/pdf},
}

@article{mumby_stress_2015,
	title = {Stress and body condition are associated with climate and demography in {Asian} elephants},
	volume = {3},
	issn = {2051-1434},
	url = {https://academic.oup.com/conphys/article-lookup/doi/10.1093/conphys/cov030},
	doi = {10.1093/conphys/cov030},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Conservation Physiology},
	author = {Mumby, Hannah S. and Mar, Khyne U. and Thitaram, Chatchote and Courtiol, Alexandre and Towiboon, Patcharapa and Min-Oo, Zaw and Htut-Aung, Ye and Brown, Janine L. and Lummaa, Virpi},
	year = {2015},
	keywords = {dzg\_traits\_climate, dzg\_health\_immunity, dzg\_taxon\_elephant},
	pages = {cov030},
	file = {cov030.pdf:/home/alex/Zotero/storage/LM58YYWK/cov030.pdf:application/pdf},
}

@article{mumby_birth_2013,
	title = {Birth seasonality and calf mortality in a large population of {Asian} elephants},
	volume = {3},
	issn = {20457758},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/ece3.746},
	doi = {10.1002/ece3.746},
	language = {en},
	number = {11},
	urldate = {2022-04-04},
	journal = {Ecology and Evolution},
	author = {Mumby, Hannah S. and Courtiol, Alexandre and Mar, Khyne U. and Lummaa, Virpi},
	month = oct,
	year = {2013},
	keywords = {dzg\_traits\_climate, dzg\_taxon\_elephant, dzg\_conservation\_captivity},
	pages = {3794--3803},
	file = {Ecology and Evolution - 2013 - Mumby - Birth seasonality and calf mortality in a large population of Asian elephants.pdf:/home/alex/Zotero/storage/AHGPEF7N/Ecology and Evolution - 2013 - Mumby - Birth seasonality and calf mortality in a large population of Asian elephants.pdf:application/pdf},
}

@article{mumby_climatic_2013,
	title = {Climatic variation and age-specific survival in {Asian} elephants from {Myanmar}},
	volume = {94},
	issn = {0012-9658},
	url = {http://doi.wiley.com/10.1890/12-0834.1},
	doi = {10.1890/12-0834.1},
	language = {en},
	number = {5},
	urldate = {2022-04-04},
	journal = {Ecology},
	author = {Mumby, Hannah S. and Courtiol, Alexandre and Mar, Khyne U. and Lummaa, Virpi},
	month = may,
	year = {2013},
	keywords = {dzg\_traits\_lifespan, dzg\_traits\_climate, dzg\_conservation\_climate, dzg\_taxon\_elephant},
	pages = {1131--1141},
	file = {Ecology - 2013 - Mumby - Climatic variation and age-specific survival in Asian elephants from Myanmar.pdf:/home/alex/Zotero/storage/BIXUY64Q/Ecology - 2013 - Mumby - Climatic variation and age-specific survival in Asian elephants from Myanmar.pdf:application/pdf},
}

@article{lahdenpera_differences_2018,
	title = {Differences in age-specific mortality between wild-caught and captive-born {Asian} elephants},
	volume = {9},
	issn = {2041-1723},
	url = {http://www.nature.com/articles/s41467-018-05515-8},
	doi = {10.1038/s41467-018-05515-8},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Nature Communications},
	author = {Lahdenper{\"a}, Mirkka and Mar, Khyne U. and Courtiol, Alexandre and Lummaa, Virpi},
	month = dec,
	year = {2018},
	keywords = {dzg\_best, dzg\_traits\_lifespan, dzg\_taxon\_elephant, dzg\_conservation\_captivity},
	pages = {3023},
	file = {s41467-018-05515-8.pdf:/home/alex/Zotero/storage/L8WC6Z3E/s41467-018-05515-8.pdf:application/pdf},
}

@article{paijmans_impact_2016,
	title = {Impact of enrichment conditions on cross-species capture of fresh and degraded {DNA}},
	volume = {16},
	issn = {1755098X},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12420},
	doi = {10.1111/1755-0998.12420},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Molecular Ecology Resources},
	author = {Paijmans, Johanna L. A. and Fickel, Joerns and Courtiol, Alexandre and Hofreiter, Michael and F{\"o}rster, Daniel W.},
	month = jan,
	year = {2016},
	keywords = {dzg\_taxon\_carnivore, dzg\_methods\_genomics},
	pages = {42--55},
	file = {Molecular Ecology Resources - 2015 - Paijmans - Impact of enrichment conditions on cross-species capture of fresh and.pdf:/home/alex/Zotero/storage/SL69FTIE/Molecular Ecology Resources - 2015 - Paijmans - Impact of enrichment conditions on cross-species capture of fresh and.pdf:application/pdf},
}

@article{davidian_why_2016,
	title = {Why do some males choose to breed at home when most other males disperse?},
	volume = {2},
	issn = {2375-2548},
	url = {https://www.science.org/doi/10.1126/sciadv.1501236},
	doi = {10.1126/sciadv.1501236},
	abstract = {A long-term study on spotted hyenas shows that male philopatry and dispersal may result from a single process of habitat selection. 
          ,  
            Dispersal is a key driver of ecological and evolutionary processes. Despite substantial efforts to explain the evolution of dispersal, we still do not fully understand why individuals of the same sex of a species vary in their propensity to disperse. The dominant hypothesis emphasizes movements and assumes that leaving home (dispersal) and staying at home (philopatry) are two alternative strategies providing different fitness. It suggests that only individuals of high phenotypic quality can pursue the most beneficial strategy; the others are left to do a {\textquotedblleft}best-of-a-bad{\textquotedblright} job. An alternative hypothesis emphasizes settlement decisions and suggests that all individuals pursue a single strategy of choosing the breeding habitat or group with the highest fitness prospects; choosing the natal group (philopatry) and choosing a nonnatal group (dispersal) are then outcomes of these decisions. We tested both hypotheses using a long-term study of a free-ranging population of a group-living carnivore, the spotted hyena. We combined demographic data with data on dispersal-relevant phenotypic traits, breeding-group choice, survival, and reproductive success of 254 males. Our results contradict the best-of-a-bad-job hypothesis: philopatric males and dispersers were of similar phenotypic quality, had similar fitness, and applied similar settlement rules based on the fitness prospects in groups. Our findings demonstrate that the distribution of breeding partners can be more important in shaping dispersal patterns than the costs associated with the dispersal movement. The study provides novel insights into the processes leading to the coexistence of philopatry and dispersal within the same sex of a species.},
	language = {en},
	number = {3},
	urldate = {2022-04-04},
	journal = {Science Advances},
	author = {Davidian, Eve and Courtiol, Alexandre and Wachter, Bettina and Hofer, Heribert and H{\"o}ner, Oliver P.},
	month = mar,
	year = {2016},
	keywords = {dzg\_taxon\_carnivore, dzg\_behaviour\_migration, dzg\_behaviour\_matechoice},
	pages = {e1501236},
	file = {sciadv.1501236.pdf:/home/alex/Zotero/storage/AIC53LPW/sciadv.1501236.pdf:application/pdf},
}

@article{davidian_determining_2015,
	title = {Determining hormone metabolite concentrations when enzyme immunoassay accuracy varies over time},
	volume = {6},
	issn = {2041-210X, 2041-210X},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12338},
	doi = {10.1111/2041-210X.12338},
	language = {en},
	number = {5},
	urldate = {2022-04-04},
	journal = {Methods in Ecology and Evolution},
	author = {Davidian, Eve and Benhaiem, Sarah and Courtiol, Alexandre and Hofer, Heribert and H{\"o}ner, Oliver P. and Dehnhard, Martin},
	editor = {Fisher, Diana},
	month = may,
	year = {2015},
	keywords = {dzg\_methods\_quantitative, dzg\_taxon\_carnivore, dzg\_methods\_noninvasive, dzg\_health\_immunity},
	pages = {576--583},
	file = {Methods Ecol Evol - 2015 - Davidian - Determining hormone metabolite concentrations when enzyme immunoassay accuracy varies.pdf:/home/alex/Zotero/storage/JR4M7XD5/Methods Ecol Evol - 2015 - Davidian - Determining hormone metabolite concentrations when enzyme immunoassay accuracy varies.pdf:application/pdf},
}

@article{heinrich_cheetahs_2017,
	title = {Cheetahs have a stronger constitutive innate immunity than leopards},
	volume = {7},
	issn = {2045-2322},
	url = {http://www.nature.com/articles/srep44837},
	doi = {10.1038/srep44837},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Scientific Reports},
	author = {Heinrich, Sonja K. and Hofer, Heribert and Courtiol, Alexandre and Melzheimer, J{\"o}rg and Dehnhard, Martin and Czirj{\'a}k, G{\'a}bor {\'A}. and Wachter, Bettina},
	month = apr,
	year = {2017},
	keywords = {dzg\_taxon\_carnivore, dzg\_conservation\_captivity},
	pages = {44837},
	file = {srep44837.pdf:/home/alex/Zotero/storage/Y3U22TUL/srep44837.pdf:application/pdf},
}

@article{vullioud_social_2019,
	title = {Social support drives female dominance in the spotted hyaena},
	volume = {3},
	issn = {2397-334X},
	url = {http://www.nature.com/articles/s41559-018-0718-9},
	doi = {10.1038/s41559-018-0718-9},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Nature Ecology \& Evolution},
	author = {Vullioud, Colin and Davidian, Eve and Wachter, Bettina and Rousset, Fran{\c c}ois and Courtiol, Alexandre and H{\"o}ner, Oliver P.},
	month = jan,
	year = {2019},
	keywords = {dzg\_taxon\_carnivore, dzg\_best, dzg\_behaviour\_hierarchy},
	pages = {71--76},
	file = {Vullioud_et_al_2018_NEE.pdf:/home/alex/Zotero/storage/QL3LXAV8/Vullioud_et_al_2018_NEE.pdf:application/pdf},
}

@article{azevedo_age_2019,
	title = {Age, sex and storage time influence hair cortisol levels in a wild mammal population},
	volume = {14},
	issn = {1932-6203},
	url = {https://dx.plos.org/10.1371/journal.pone.0221124},
	doi = {10.1371/journal.pone.0221124},
	language = {en},
	number = {8},
	urldate = {2022-04-04},
	journal = {PLOS ONE},
	author = {Azevedo, Alexandre and Bailey, Liam and Bandeira, Victor and Dehnhard, Martin and Fonseca, Carlos and de Sousa, Liliana and Jewgenow, Katarina},
	editor = {Umapathy, Govindhaswamy},
	month = aug,
	year = {2019},
	keywords = {dzg\_taxon\_carnivore, dzg\_methods\_noninvasive, dzg\_health\_immunity},
	pages = {e0221124},
	file = {Full Text:/home/alex/Zotero/storage/EJ5IS5UV/Azevedo et al. - 2019 - Age, sex and storage time influence hair cortisol .pdf:application/pdf},
}

@article{renoult_novel_2013,
	title = {A novel framework to study colour signalling to multiple species},
	volume = {27},
	issn = {0269-8463, 1365-2435},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/1365-2435.12086},
	doi = {10.1111/1365-2435.12086},
	language = {en},
	number = {3},
	urldate = {2022-04-04},
	journal = {Functional Ecology},
	author = {Renoult, Julien P. and Courtiol, Alexandre and Schaefer, H. Martin},
	editor = {McGraw, Kevin},
	month = jun,
	year = {2013},
	keywords = {dzg\_methods\_quantitative, dzg\_taxon\_bird, dzg\_behaviour\_perception},
	pages = {718--729},
	file = {Functional Ecology - 2013 - Renoult - A novel framework to study colour signalling to multiple species.pdf:/home/alex/Zotero/storage/TXK4XELX/Functional Ecology - 2013 - Renoult - A novel framework to study colour signalling to multiple species.pdf:application/pdf},
}

@article{gillingham_very_2017,
	title = {Very high {MHC} {Class} {IIB} diversity without spatial differentiation in the mediterranean population of greater {Flamingos}},
	volume = {17},
	issn = {1471-2148},
	url = {http://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-017-0905-3},
	doi = {10.1186/s12862-017-0905-3},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {BMC Evolutionary Biology},
	author = {Gillingham, Mark A. F. and B{\'e}chet, Arnaud and Courtiol, Alexandre and Rend{\'o}n-Martos, Manuel and Amat, Juan A. and Samraoui, Boudj{\'e}ma and Onmu{\c s}, Orta{\c c} and Sommer, Simone and C{\'e}zilly, Frank},
	month = dec,
	year = {2017},
	keywords = {dzg\_taxon\_bird, dzg\_health\_MHC},
	pages = {56},
	file = {s12862-017-0905-3.pdf:/home/alex/Zotero/storage/XZZRE2MQ/s12862-017-0905-3.pdf:application/pdf},
}

@article{gillingham_evidence_2016,
	title = {Evidence of gene orthology and trans-species polymorphism, but not of parallel evolution, despite high levels of concerted evolution in the major histocompatibility complex of flamingo species},
	volume = {29},
	issn = {1010061X},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/jeb.12798},
	doi = {10.1111/jeb.12798},
	language = {en},
	number = {2},
	urldate = {2022-04-04},
	journal = {Journal of Evolutionary Biology},
	author = {Gillingham, M. A. F. and Courtiol, A. and Teixeira, M. and Galan, M. and Bechet, A. and Cezilly, F.},
	month = feb,
	year = {2016},
	keywords = {dzg\_taxon\_bird, dzg\_health\_MHC},
	pages = {438--454},
	file = {J of Evolutionary Biology - 2015 - Gillingham - Evidence of gene orthology and trans-species polymorphism  but not of.pdf:/home/alex/Zotero/storage/M5S7UCJS/J of Evolutionary Biology - 2015 - Gillingham - Evidence of gene orthology and trans-species polymorphism  but not of.pdf:application/pdf},
}

@article{krone_monitoring_2019,
	title = {Monitoring corticoid metabolites in urine of white-tailed sea eagles: {Negative} effects of road proximity on breeding pairs},
	volume = {283},
	issn = {00166480},
	shorttitle = {Monitoring corticoid metabolites in urine of white-tailed sea eagles},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648018304258},
	doi = {10.1016/j.ygcen.2019.113223},
	language = {en},
	urldate = {2022-04-04},
	journal = {General and Comparative Endocrinology},
	author = {Krone, Oliver and Bailey, Liam D. and J{\"a}hnig, Susanne and Lauth, Torsten and Dehnhard, Martin},
	month = nov,
	year = {2019},
	keywords = {dzg\_conservation\_degradation, dzg\_taxon\_bird, dzg\_health\_immunity},
	pages = {113223},
	file = {Krone et al. - 2019 - Monitoring corticoid metabolites in urine of white.pdf:/home/alex/Zotero/storage/FVB5WSYH/Krone et al. - 2019 - Monitoring corticoid metabolites in urine of white.pdf:application/pdf},
}

@article{radchuk_adaptive_2019,
	title = {Adaptive responses of animals to climate change are most likely insufficient},
	volume = {10},
	issn = {2041-1723},
	url = {http://www.nature.com/articles/s41467-019-10924-4},
	doi = {10.1038/s41467-019-10924-4},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Nature Communications},
	author = {Radchuk, Viktoriia and Reed, Thomas and Teplitsky, C{\'e}line and van de Pol, Martijn and Charmantier, Anne and Hassall, Christopher and Adam{\'i}k, Peter and Adriaensen, Frank and Ahola, Markus P. and Arcese, Peter and Miguel Avil{\'e}s, Jes{\'u}s and Balbontin, Javier and Berg, Karl S. and Borras, Antoni and Burthe, Sarah and Clobert, Jean and Dehnhard, Nina and de Lope, Florentino and Dhondt, Andr{\'e} A. and Dingemanse, Niels J. and Doi, Hideyuki and Eeva, Tapio and Fickel, Joerns and Filella, Iolanda and Foss{\o}y, Frode and Goodenough, Anne E. and Hall, Stephen J. G. and Hansson, Bengt and Harris, Michael and Hasselquist, Dennis and Hickler, Thomas and Joshi, Jasmin and Kharouba, Heather and Mart{\'i}nez, Juan Gabriel and Mihoub, Jean-Baptiste and Mills, James A. and Molina-Morales, Mercedes and Moksnes, Arne and Ozgul, Arpat and Parejo, Deseada and Pilard, Philippe and Poisbleau, Maud and Rousset, Francois and R{\"o}del, Mark-Oliver and Scott, David and Senar, Juan Carlos and Stefanescu, Constanti and Stokke, B{\r a}rd G. and Kusano, Tamotsu and Tarka, Maja and Tarwater, Corey E. and Thonicke, Kirsten and Thorley, Jack and Wilting, Andreas and Tryjanowski, Piotr and Meril{\"a}, Juha and Sheldon, Ben C. and Pape M{\o}ller, Anders and Matthysen, Erik and Janzen, Fredric and Dobson, F. Stephen and Visser, Marcel E. and Beissinger, Steven R. and Courtiol, Alexandre and Kramer-Schadt, Stephanie},
	month = dec,
	year = {2019},
	keywords = {dzg\_taxon\_bird, dzg\_traits\_fitness, dzg\_best, dzg\_traits\_climate, dzg\_conservation\_climate, dzg\_morphology\_climate},
	pages = {3109},
	file = {s41467-019-10924-4.pdf:/home/alex/Zotero/storage/49VAT6PW/s41467-019-10924-4.pdf:application/pdf},
}

@article{merling_de_chapa_phantom_2020,
	title = {Phantom of the forest or successful citizen? {Analysing} how {Northern} {Goshawks} (\textit{{Accipiter} gentilis}) cope with the urban environment},
	volume = {7},
	issn = {2054-5703},
	shorttitle = {Phantom of the forest or successful citizen?},
	url = {https://royalsocietypublishing.org/doi/10.1098/rsos.201356},
	doi = {10.1098/rsos.201356},
	abstract = {By 2040, roughly two-thirds of humanity are expected to live in urban areas. As cities expand, humans irreversibly transform natural ecosystems, creating both opportunities and challenges for wildlife. Here, we investigate how the Northern Goshawk ( 
              Accipiter gentilis 
              ) is adjusting to urban environments. We measured a variety of behavioural and ecological parameters in three urban and four rural study sites. City life appeared related to all parameters we measured. Urban female goshawks were overall 21.7 (CI 
              95\% 
              5.13{\textendash}130) times more likely to defend their nestlings from humans than rural females. Urban goshawks were 3.64 (CI 
              95\% 
              2.05{\textendash}6.66) times more likely to feed on pigeons and had diets exhibiting lower overall species richness and diversity. Urban females laid eggs 12.5 (CI 
              95\% 
              7.12{\textendash}17.4) days earlier than rural individuals and were 2.22 (CI 
              95\% 
              0.984{\textendash}4.73) times more likely to produce a brood of more than three nestlings. Nonetheless, urban goshawks suffered more from infections with the parasite 
              Trichomonas gallinae 
              , which was the second most common cause of mortality (14.6\%), after collisions with windows (33.1\%). In conclusion, although city life is associated with significant risks, goshawks appear to thrive in some urban environments, most likely as a result of high local availability of profitable pigeon prey. We conclude that the Northern Goshawk can be classified as an urban exploiter in parts of its distribution.},
	language = {en},
	number = {12},
	urldate = {2022-04-04},
	journal = {Royal Society Open Science},
	author = {Merling de Chapa, Manuela and Courtiol, Alexandre and Engler, Marc and Giese, Lisa and Rutz, Christian and Lakermann, Michael and M{\"u}skens, Gerard and van der Horst, Youri and Zollinger, Ronald and Wirth, Hans and Kenntner, Norbert and Kr{\"u}ger, Oliver and Chakarov, Nayden and M{\"u}ller, Anna-Katharina and Looft, Volkher and Gr{\"u}nkorn, Thomas and Hallau, Andr{\'e} and Altenkamp, Rainer and Krone, Oliver},
	month = dec,
	year = {2020},
	keywords = {dzg\_conservation\_degradation, dzg\_taxon\_bird, dzg\_health\_diseases},
	pages = {201356},
	file = {rsos.201356.pdf:/home/alex/Zotero/storage/LTPVHFY5/rsos.201356.pdf:application/pdf},
}

@article{bailey_using_2020,
	title = {Using different body size measures can lead to different conclusions about the effects of climate change},
	volume = {47},
	issn = {0305-0270, 1365-2699},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/jbi.13850},
	doi = {10.1111/jbi.13850},
	language = {en},
	number = {8},
	urldate = {2022-04-04},
	journal = {Journal of Biogeography},
	author = {Bailey, Liam D. and Kruuk, Loeske E. B. and Allen, Richard and Clayton, Mark and Stein, John and Gardner, Janet L.},
	month = aug,
	year = {2020},
	keywords = {dzg\_taxon\_bird, dzg\_morphology\_climate},
	pages = {1687--1697},
	file = {Accepted Version:/home/alex/Zotero/storage/VIF5Q3U8/Bailey et al. - 2020 - Using different body size measures can lead to dif.pdf:application/pdf},
}

@article{schneeberger_immune_2014,
	title = {Immune profile predicts survival and reflects senescence in a small, long-lived mammal, the {Greater} {Sac}-{Winged} {Bat} (\textit{{Saccopteryx} bilineata})},
	volume = {9},
	issn = {1932-6203},
	url = {https://dx.plos.org/10.1371/journal.pone.0108268},
	doi = {10.1371/journal.pone.0108268},
	language = {en},
	number = {9},
	urldate = {2022-04-04},
	journal = {PLoS ONE},
	author = {Schneeberger, Karin and Courtiol, Alexandre and Czirj{\'a}k, G{\'a}bor {\'A}. and Voigt, Christian C.},
	editor = {Baker, Michelle L.},
	month = sep,
	year = {2014},
	keywords = {dzg\_traits\_lifespan, dzg\_health\_immunity, dzg\_taxon\_bat},
	pages = {e108268},
	file = {immune_profile.pdf:/home/alex/Zotero/storage/2BNXRRUA/immune_profile.pdf:application/pdf},
}

@article{santos_mhc-dependent_2016,
	title = {{MHC}-dependent mate choice is linked to a trace-amine-associated receptor gene in a mammal},
	volume = {6},
	issn = {2045-2322},
	url = {http://www.nature.com/articles/srep38490},
	doi = {10.1038/srep38490},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Scientific Reports},
	author = {Santos, Pablo S. C. and Courtiol, Alexandre and Heidel, Andrew J. and H{\"o}ner, Oliver P. and Heckmann, Ilja and Nagy, Martina and Mayer, Frieder and Platzer, Matthias and Voigt, Christian C. and Sommer, Simone},
	month = dec,
	year = {2016},
	keywords = {dzg\_taxon\_bat, dzg\_behaviour\_matechoice, dzg\_health\_MHC},
	pages = {38490},
	file = {srep38490.pdf:/home/alex/Zotero/storage/LNAJJNFY/srep38490.pdf:application/pdf},
}

@article{seltmann_habitat_2017,
	title = {Habitat disturbance results in chronic stress and impaired health status in forest-dwelling paleotropical bats},
	volume = {5},
	issn = {2051-1434},
	url = {https://academic.oup.com/conphys/article-lookup/doi/10.1093/conphys/cox020},
	doi = {10.1093/conphys/cox020},
	language = {en},
	number = {1},
	urldate = {2022-04-04},
	journal = {Conservation Physiology},
	author = {Seltmann, Anne and Czirj{\'a}k, G{\'a}bor {\'A}. and Courtiol, Alexandre and Bernard, Henry and Struebig, Matthew J. and Voigt, Christian C.},
	year = {2017},
	keywords = {dzg\_conservation\_degradation, dzg\_taxon\_bat},
	file = {cox020.pdf:/home/alex/Zotero/storage/SJVJRBWV/cox020.pdf:application/pdf},
}

@incollection{courtiol_isoscape_2019,
	title = {Isoscape computation and inference of spatial origins with mixed models using the {R} package {IsoriX}},
	booktitle = {Tracking animal migration with stable isotopes},
	publisher = {Academic Press},
	author = {Courtiol, Alexandre and Rousset, Fran{\c c}ois and Rohw{\"a}der, Marie-Sophie and Soto, David X and Lehnert, Linn S and Voigt, Christian C and Hobson, Keith A and Wassenaar, Leonard I and Kramer-Schadt, Stephanie},
	year = {2019},
	keywords = {dzg\_taxon\_bat, dzg\_behaviour\_migration, dzg\_methods\_packages},
	pages = {207--236},
}

@article{kravchenko_generational_2020,
	title = {Generational shift in the migratory common noctule bat: first-year males lead the way to hibernacula at higher latitudes},
	volume = {16},
	issn = {1744-9561, 1744-957X},
	shorttitle = {Generational shift in the migratory common noctule bat},
	url = {https://royalsocietypublishing.org/doi/10.1098/rsbl.2020.0351},
	doi = {10.1098/rsbl.2020.0351},
	abstract = {Many migratory species have shifted their geographic distribution in response to climate change, yet the underlying mechanisms are poorly understood, particularly for mammals. We hypothesized that generational shifts are underlying the observed colonization of hibernation sites further north in a migratory bat, the common noctule ( 
              Nyctalus noctula) 
              . To evaluate our hypothesis, we collected long-term data on the migratory status and demography of common noctules in a recently colonized hibernation area. Based on isotopic data of 413 individuals, we observed a significant decline in the proportion of long-distance migrants from 2004 to 2015 for both sexes and across all age groups. Demographic data collected between 2007 and 2016 from 3394 individuals demonstrated that subadult males were more abundant during the early colonization stage, followed by a gradual shift to a more balanced age and sex composition. Our results suggest that the colonization of hibernacula at higher latitudes is promoted by generational shifts, involving mostly first-year males. Generational shifts seem to be a likely mechanism for distribution changes in other bats and potentially also in other mammals.},
	language = {en},
	number = {9},
	urldate = {2022-04-04},
	journal = {Biology Letters},
	author = {Kravchenko, K. A. and Vlaschenko, A. S. and Lehnert, L. S. and Courtiol, A. and Voigt, C.C.},
	month = sep,
	year = {2020},
	keywords = {dzg\_taxon\_bat, dzg\_behaviour\_migration},
	pages = {20200351},
	file = {rsbl.2020.0351.pdf:/home/alex/Zotero/storage/JL5A2CJP/rsbl.2020.0351.pdf:application/pdf},
}

@article{debelle_mate_2017,
	title = {Mate choice intensifies motor signalling in {Drosophila}},
	volume = {133},
	issn = {00033472},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0003347217303019},
	doi = {10.1016/j.anbehav.2017.09.014},
	language = {en},
	urldate = {2022-04-04},
	journal = {Animal Behaviour},
	author = {Debelle, Allan and Courtiol, Alexandre and Ritchie, Michael G. and Snook, Rhonda R.},
	month = nov,
	year = {2017},
	keywords = {dzg\_behaviour\_matechoice, dzg\_taxon\_arthropod},
	pages = {169--187},
	file = {1-s2.0-S0003347217303019-main.pdf:/home/alex/Zotero/storage/CKFM8NGX/1-s2.0-S0003347217303019-main.pdf:application/pdf},
}

@article{niedballa_camtrapr_2016,
	title = {{camtrapR}: an {R} package for efficient camera trap data management},
	volume = {7},
	issn = {2041-210X, 2041-210X},
	shorttitle = {{camtrapR}},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12600},
	doi = {10.1111/2041-210X.12600},
	language = {en},
	number = {12},
	urldate = {2022-04-04},
	journal = {Methods in Ecology and Evolution},
	author = {Niedballa, J{\"u}rgen and Sollmann, Rahel and Courtiol, Alexandre and Wilting, Andreas},
	editor = {Jansen, Patrick},
	month = dec,
	year = {2016},
	keywords = {dzg\_methods\_noninvasive, dzg\_methods\_packages},
	pages = {1457--1462},
	file = {Methods Ecol Evol - 2016 - Niedballa - camtrapR  an R package for efficient camera trap data management.pdf:/home/alex/Zotero/storage/VABMDV8M/Methods Ecol Evol - 2016 - Niedballa - camtrapR  an R package for efficient camera trap data management.pdf:application/pdf},
}

@article{niedballa_assessing_2019,
	title = {Assessing analytical methods for detecting spatiotemporal interactions between species from camera trapping data},
	volume = {5},
	issn = {20563485},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/rse2.107},
	doi = {10.1002/rse2.107},
	language = {en},
	number = {3},
	urldate = {2022-04-04},
	journal = {Remote Sensing in Ecology and Conservation},
	author = {Niedballa, J{\"u}rgen and Wilting, Andreas and Sollmann, Rahel and Hofer, Heribert and Courtiol, Alexandre},
	editor = {Rowcliffe, Marcus and Ahumada, Jorge},
	month = sep,
	year = {2019},
	keywords = {dzg\_methods\_noninvasive},
	pages = {272--285},
	file = {Remote Sens Ecol Conserv - 2019 - Niedballa - Assessing analytical methods for detecting spatiotemporal interactions.pdf:/home/alex/Zotero/storage/9T7TCTHZ/Remote Sens Ecol Conserv - 2019 - Niedballa - Assessing analytical methods for detecting spatiotemporal interactions.pdf:application/pdf},
}

@incollection{hobson_outlook_2019,
	title = {Outlook for using stable isotopes in animal migration studies},
	booktitle = {Tracking animal migration with stable isotopes},
	publisher = {Academic Press},
	author = {Hobson, Keith A and Wassenaar, Leonard I and Bowen, Gabriel J and Courtiol, Alexandre and Trueman, Clive N and Voigt, Christian C and West, Jason B and McMahon, Kelton W and Newsome, Seth D},
	year = {2019},
	keywords = {dzg\_behaviour\_migration},
	pages = {237--244},
}

@incollection{adriaens_biologie_2016,
	title = {Biologie {\'e}volutive humaine},
	booktitle = {Biologie {\'e}volutive},
	author = {Adriaens, P and Alvergne, A and Andr{\'e}, JB and Baumard, N and Caillaud, D and Coupe, C and Courtiol, A and Godelle, B and Heyer, E and Huchard, E and {others}},
	year = {2016},
	file = {chap.17.pdf:/home/alex/Zotero/storage/GVD5GF5D/chap.17.pdf:application/pdf},
}

@article{magalhaes_tell_2019,
	title = {Tell me who you mate with, {I}{\textquoteright}ll tell you what{\textquoteright}s going on},
	issn = {2551668X},
	url = {https://evolbiol.peercommunityin.org/articles/rec?id=186},
	doi = {10.24072/pci.evolbiol.100075},
	language = {en},
	urldate = {2022-04-04},
	journal = {Peer Community In Evolutionary Biology},
	author = {Magalh{\~a}es, Sara and Courtiol, Alexandre},
	month = jun,
	year = {2019},
	pages = {100075},
	file = {t_pdf.pdf.ab1cfd2410903c3a.444f432e706466.pdf:/home/alex/Zotero/storage/U2AZGBXQ/t_pdf.pdf.ab1cfd2410903c3a.444f432e706466.pdf:application/pdf},
}

@article{courtiol_reply_2024,
	title = {Reply to: {Maternal} capacity, twinning and fertility: the last birth matters},
	volume = {15},
	copyright = {2024 The Author(s)},
	issn = {2041-1723},
	shorttitle = {Reply to},
	url = {https://www.nature.com/articles/s41467-024-52549-2},
	doi = {10.1038/s41467-024-52549-2},
	language = {en},
	number = {1},
	urldate = {2024-09-30},
	journal = {Nature Communications},
	author = {Courtiol, Alexandre and Vullioud, Colin and Rousset, Fran{\c c}ois and Postma, Erik and Helle, Samuli and Lummaa, Virpi and Kylli, Ritva and Pettay, Jenni E. and R{\o}skaft, Eivin and Skj{\ae}rv{\o}, Gine R. and St{\"o}rmer, Charlotte and Voland, Eckart and Waldvogel, Dominique and Rickard, Ian J.},
	month = sep,
	year = {2024},
	note = {Publisher: Nature Publishing Group},
	keywords = {Evolutionary ecology, dzg\_recent, dzg\_taxon\_primate, dzg\_traits\_fitness, Biological anthropology},
	pages = {8446},
	file = {Full Text PDF:/home/alex/Zotero/storage/DAPFYBLW/Courtiol et al. - 2024 - Reply to Maternal capacity, twinning and fertility the last birth matters.pdf:application/pdf},
}

@article{engler_breeding_2025,
	title = {Breeding site fidelity in the concrete jungle: implications for the management of urban mallards},
	volume = {11},
	issn = {2058-5543},
	shorttitle = {Breeding site fidelity in the concrete jungle},
	url = {https://doi.org/10.1093/jue/juae023},
	doi = {10.1093/jue/juae023},
	abstract = {Understanding the selection of breeding sites in cities is key for the effective management of urban bird populations. We analysed 16 years of data collected within a relocation program for female mallards in Berlin (Germany), with the goal of (i) characterizing the breeding output and breeding sites in urban environments, (ii) identifying factors correlating with probabilities of individuals to return to previously used breeding sites (i.e. breeding site fidelity) and (iii) assessing the consequences of ongoing management strategies on the selection of breeding sites. Mallards using anthropogenic structures for breeding primarily chose balconies, roof terraces and courtyards. In 22.8\% of cases, mallards selected the same sites in subsequent breeding events. Breeding site fidelity decreased with higher human population density at that location, and decreased as mallard families were relocated further away from the breeding site to a suitable water body. In contrast, return probabilities were higher for subsequent broods within the same breeding season than across two successive seasons. Above all, the identity of the breeding location and the identity of the female best predicted whether an individual would return to a given breeding site. We conclude that breeding site fidelity in urban mallards is strongly shaped by micro-scale location-specific properties (e.g. balcony characteristics), as well as individual variation due to an intrinsic propensity for site fidelity. We argue that adequate management for waterfowl in urban environments depends on why birds choose to breed on anthropogenic structures, on their conservation status and the availability of breeding sites around urban waters.},
	number = {1},
	urldate = {2025-01-12},
	journal = {Journal of Urban Ecology},
	author = {Engler, Marc and Chavez, Rub{\'e}n and Sens, Rebekka and Lundberg, Maja and Delor, Alexandra and Rousset, Fran{\c c}ois and Courtiol, Alexandre},
	month = jan,
	year = {2025},
	keywords = {dzg\_behaviour\_migration, dzg\_conservation\_degradation, dzg\_conservation\_management, dzg\_recent, dzg\_taxon\_bird, dzg\_traits\_fitness},
	pages = {juae023},
	file = {Full Text PDF:/home/alex/Zotero/storage/9YAUZCCZ/Engler et al. - 2025 - Breeding site fidelity in the concrete jungle implications for the management of urban mallards.pdf:application/pdf;Snapshot:/home/alex/Zotero/storage/38SKKN6H/7945465.html:text/html},
}