Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Rename bed_type column to bed_compliance #93

Open
1 task done
donaldcampbelljr opened this issue Jan 28, 2025 · 4 comments
Open
1 task done

Rename bed_type column to bed_compliance #93

donaldcampbelljr opened this issue Jan 28, 2025 · 4 comments
Assignees

Comments

@donaldcampbelljr
Copy link
Member

donaldcampbelljr commented Jan 28, 2025

Essentially the bed_type is currently telling us how well the bed file complies with the specification:

https://genome.ucsc.edu/FAQ/FAQformat.html#format1

  • Rename to bed_spec_compliance or something similar, open to suggestions
@donaldcampbelljr
Copy link
Member Author

(ucsc_bed_spec_compliance, bed_format)

@donaldcampbelljr
Copy link
Member Author

I refactored and changed these items within the classifier

  • We will also need to change the column names in the database @khoroshevskyi .

Is there anywhere else we need to change them?

@donaldcampbelljr donaldcampbelljr changed the title Rename bed_type column to bed_spec_compliance Rename bed_type column to bed_compliance Feb 21, 2025
@donaldcampbelljr
Copy link
Member Author

this will now be:
(bed_compliance, data_format)

we will also add two columns:
ccols -> compliant columns
nccols -> non-compliant columns

@donaldcampbelljr
Copy link
Member Author

I've made the above changes. Now, we need to change the column names within the database.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants