From 1e09219fc7c9b08cc1abcef7351f48782f90ee5e Mon Sep 17 00:00:00 2001
From: Robin De Schepper <robin.deschepper93@gmail.com>
Date: Tue, 19 Dec 2023 14:20:06 +0100
Subject: [PATCH] Add CI and beta dependencies (#1)

* add tests

* add test requirements

* add coverage
---
 .github/workflows/main.yml | 40 ++++++++++++++++++++++++++++++++++++++
 pyproject.toml             |  8 ++++++--
 requirements.txt           |  5 +++++
 3 files changed, 51 insertions(+), 2 deletions(-)
 create mode 100644 .github/workflows/main.yml
 create mode 100644 requirements.txt

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
new file mode 100644
index 0000000..cc36a8f
--- /dev/null
+++ b/.github/workflows/main.yml
@@ -0,0 +1,40 @@
+name: Test BSB Arbor adapter
+
+on: [ push, pull_request ]
+
+jobs:
+  build:
+    if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ "3.9", "3.10", "3.11" ]
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install apt dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install openmpi-bin libopenmpi-dev
+      - name: Cache pip
+        uses: actions/cache@v3
+        with:
+          path: ~/.cache/pip
+          key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-
+            ${{ runner.os }}-
+      - name: Install dependencies & self
+        run: |
+          python -m pip install --upgrade pip
+          pip install -e . --no-deps
+          pip install -r requirements.txt --prefer-binary
+          pip install -e .
+      - name: Run tests & coverage
+        run: |
+          coverage run -p -m unittest
+          mpiexec -n 2 coverage run -p -m unittest
+          bash <(curl -s https://codecov.io/bash)
diff --git a/pyproject.toml b/pyproject.toml
index 6fb7a2c..72b3055 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -9,7 +9,11 @@ readme = "README.md"
 license = {file = "LICENSE"}
 classifiers = ["License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)"]
 dynamic = ["version", "description"]
-dependencies = ["bsb-core>=4.0.0b0,<=4.0.0b9999", "arbor~=0.9", "arborize[arbor]==4.0.0a4"]
+dependencies = [
+    "bsb-core>=4.0.0b0,<=4.0.0b9999",
+    "arbor~=0.9",
+    "arborize[arbor]>=4.0.0b1"
+]
 
 [project.entry-points."bsb.simulation_backends"]
 arbor = "bsb_arbor"
@@ -18,4 +22,4 @@ arbor = "bsb_arbor"
 name = "bsb_arbor"
 
 [project.optional-dependencies]
-test = ["bsb-test==0.0.0a0"]
+test = ["bsb-test>=0.0.0b0"]
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..3934cb6
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,5 @@
+arbor==0.9
+mpi4py==3.1.5
+bsb-core>=4.0.0b0
+bsb-test==0.0.0b2
+coverage==7.3.3
\ No newline at end of file