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More flexible sequence weight handling #224

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thomashopf opened this issue Aug 9, 2019 · 0 comments

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thomashopf commented Aug 9, 2019

Right now, sequence weights are done in a very rigid way - computed inside plmc, no option to export etc.

Ideally, we would be able to:

export sequence weights computed by plmc, or - even better - move the computation to a dedicated step
allow user-defined sequence weights or reuse existing weights
have more elaborate sequence weighting schemes
have faster sequence weighting algorithms instead of all vs all which becomes prohibitively expensive for large alignments

thomashopf added the enhancement label

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