lineages.csv

lineage,synonyms,aa_definition,nt_definition,VinOEBS,VinTEBS,CDC_status,NCATS_link,doubling_time_mo_usa,doubling_time_bw_usa,doubling_time_mo_not_usa,doubling_time_bw_not_usa
A,A,"nsp4:S76S,ORF8:L84S","C8782T,T28144C",,,,,,,,
A.2,A.2,"nsp4:F308Y,ORF3a:G196V,N:S197L","T9477A,G25979T,C28863T",ORF3a:G196V,,,,,,,
A.2.5,A.2.5,"nsp4:F308Y,S:L452R,ORF3a:S74F,ORF3a:G196V,N:S197L","T9477A,T22917G,C25613T,G25979T,C28863T","N:M234I,N:P365S,ORF3a:G196V,N:P383L",S:L452R,,,,,,
A.2.5.2,A.2.5.2,"nsp4:F308Y,RdRp:M629T,S:L452R,ORF3a:S74F,ORF3a:G196V,N:S197L","T9477A,T15326C,T22917G,C25613T,G25979T,C28863T","N:P365S,ORF3a:G196V,S:L141-,N:P383L,N:M234I,S:G142-,S:F140-,S:V143-",S:L452R,,,,,,
A.23,A.23,"S:F157L,S:V367F,S:Q613H","C22033A,G22661T,G23401T","S:Q613H,S:F157L",S:V367F,,,,,,
A.23.1,A.23.1,"nsp6:M183I,S:F157L,S:V367F,S:Q613H,S:P681R","G11521T,C22033A,G22661T,G23401T,C23604G","S:Q613H,S:P681R,S:F157L",S:V367F,,,,,,
A.30,A.VOI.V2,"nsp3:N1552K,nsp6:M86I,RdRp:T739I,S:D80Y,S:D215G,S:E484K,S:H655Y,S:P681H,N:S202N","T7375G,G11230T,C15656T,G21800T,A22206G,G23012A,C23525T,C23604A,G28878A","S:I210N,S:D80Y,S:Q957H,S:P681H,S:H655Y,S:D215G,S:W258L,S:Y144-","S:E484K,S:T478R,S:R346K",,,,,,
AT.1,B.1.1.370.1,"nsp2:S196L,nsp3:V188F,nsp6:Q160R,ORF3a:V273V","C1392T,G3281T,A11451G,G26211T","S:D1146D,S:F135F,S:L141-,S:E780K,S:P139-,S:N679K,S:D138-,S:C136-,S:C136Y,ORF3a:V273V,M:L16I,S:G142-,S:F140-,S:N137-,S:V143-,S:H245P,S:Y144-",,,,,,,
AV.1,B.1.1.482.1,"nsp1:L16L,S:N439K,S:E484K,S:I1130V,M:H125Y","C313T,C22879G,G23012A,A24950G,C26895T","nsp13:T481M,N:I157V,S:D1139H,S:P681H,S:D80G,S:T95I,S:G142D","S:E484K,S:N439K",,,,,,
AY.1,"B.1.617.2.1,Delta-AY.1","nsp3:A488S,nsp3:P1228L,nsp4:T492I,nsp6:T77A,S:W258L,S:K417N,ORF3a:S26L,N:G215C","G4181T,C6402T,C10029T,A11201G,G22335T,G22813T,C25469T,G28916T","N:D377Y,S:P681R,N:G215C,N:D63G,ORF3a:S26L,S:D950N,S:T19R,S:W258L,S:F157-,S:E156G,S:R158-","S:K417N,S:T478K,S:L452R",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=AY,20.9,42.9,74.34,176.15
AY.10,"B.1.617.2.10,Delta-AY.10","nsp4:M33V,nsp4:M324I,RdRp:G670S,nsp13:P77L,S:P681R,ORF3a:S26L","A8651G,G9526T,G15451A,C16466T,C23604G,C25469T","N:D377Y,S:A222V,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,,0.0,0.0,84.78,181.81
AY.100,"B.1.617.2.100,Delta-AY.100","nsp3:P1469S,nsp4:Y335Y,RdRp:G670S,nsp13:P77L,nsp13:A296S,ORF3a:S26L","C7124T,C9559T,G15451A,C16466T,G17122T,C25469T","N:G215C,N:D377Y,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,12.49,26.83,20.72,47.09
AY.103,"B.1.617.2.103,Delta-AY.103","nsp3:P1469S,nsp13:I334V,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,A17236G,C25469T,C27874T,G28916T","nsp13:I334V,N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,11.24,23.25,14.49,15.14
AY.105,"B.1.617.2.105,Delta-AY.105","nsp2:F86F,nsp3:P74S,nsp3:A488S,nsp13:P77L,ORF3a:S26L,N:G215C","C1063T,C2939T,G4181T,C16466T,C25469T,G28916T","N:D377Y,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,25.28,50.81,0.0,0.0
AY.107,"B.1.617.2.107,Delta-AY.107","nsp4:V167L,S:P681R,S:H1101Y,M:I82T,N:T362I","G9053T,C23604G,C24863T,T26767C,C29358T","N:D377Y,N:T362I,S:H1101Y,S:P681R,N:D63G,N:G215C,ORF3a:S26L,S:D950N,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,22.14,43.97,11.36,23.12
AY.11,"B.1.617.2.11,Delta-AY.11","nsp3:A256V,nsp13:P77L,M:I82T","C3486T,C16466T,T26767C","N:D377Y,M:A2S,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,,0.0,0.0,0.0,0.0
AY.110,"B.1.617.2.110,Delta-AY.110","nsp2:S36Y,RdRp:G670S,nsp13:P77L,S:L452R,M:I82T","C912A,G15451A,C16466T,T22917G,T26767C","N:D377Y,S:P681R,S:D950N,ORF3a:S26L,S:G142D,S:T19R","S:T478K,S:L452R",VBM,,15.3,31.35,52.17,96.4
AY.113,"B.1.617.2.113,Delta-AY.113","nsp3:A488S,nsp4:V167L,nsp4:T204I,3CLpro:K90R,nsp13:P77L","G4181T,G9053T,C9165T,A10323G,C16466T","3CLpro:K90R,N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,10.72,22.05,38.64,73.75
AY.114,"B.1.617.2.114,Delta-AY.114","nsp2:R27C,nsp4:V167L,RdRp:G670S,nsp13:P77L,nsp15:Q19H","C884T,G9053T,G15451A,C16466T,G19677T","N:G215C,N:D377Y,S:T95I,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,10.9,21.83,21.98,47.19
AY.116,"B.1.617.2.116,Delta-AY.116","3CLpro:I213V,nsp13:P77L,M:I82T","A10691G,C16466T,T26767C","3CLpro:I213V,N:D377Y,S:P681R,N:G215C,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,39.7,78.34,30.41,53.53
AY.116.1,"B.1.617.2.116.1,Delta-AY.116.1","3CLpro:I213V,nsp7:D77N,nsp13:P77L,M:I82T","A10691G,G12071A,C16466T,T26767C","3CLpro:I213V,N:G215C,N:D377Y,S:D950N,S:T95I,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,37.12,94.65,0.0,0.0
AY.117,"B.1.617.2.117,Delta-AY.117","nsp2:W466L,nsp4:V167L,RdRp:R249M,nsp13:P77L,M:I82T","G2202T,G9053T,G14186T,C16466T,T26767C","N:D377Y,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,18.54,33.49,6.84,12.9
AY.118,"B.1.617.2.118,Delta-AY.118","RdRp:G670S,nsp13:P77L,M:I82T,ORF6:E46V","G15451A,C16466T,T26767C,A27338T","N:D377Y,S:T95I,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,19.51,35.97,17.1,34.97
AY.119,"B.1.617.2.119,Delta-AY.119","nsp4:A92V,nsp13:P77L,M:I82T","C8829T,C16466T,T26767C","N:G215C,S:D950N,N:D63G,S:P681R,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,19.98,39.87,14.34,29.64
AY.119.1,"B.1.617.2.119.1,Delta-AY.119.1","nsp3:A85V,nsp4:A92V,nsp13:P77L,M:I82T","C2973T,C8829T,C16466T,T26767C","N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,27.59,65.06,22.64,46.86
AY.119.2,"B.1.617.2.119.2,Delta-AY.119.2","nsp4:A92V,nsp13:P77L,S:Q675H,M:I82T","C8829T,C16466T,G23587C,T26767C","N:D377Y,S:Q675H,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,24.3,56.53,0.0,0.0
AY.120,"B.1.617.2.120,Delta-AY.120","nsp3:P1228L,nsp3:S1230F,nsp13:P77L,S:S1147S","C6402T,C6408T,C16466T,A25003G","S:S1147S,N:D377Y,S:T95I,S:P681R,N:G215C,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,22.55,40.54,14.73,31.56
AY.120.1,"B.1.617.2.120.1,Delta-AY.120.1","nsp3:P1228L,nsp3:S1230F,nsp6:A41A,nsp13:P77L,S:S1147S","C6402T,C6408T,C11095T,C16466T,A25003G","S:S1147S,N:D377Y,S:T95I,S:P681R,N:G215C,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,24.56,49.8,0.0,0.0
AY.121,"B.1.617.2.121,Delta-AY.121","nsp4:V167L,GFL:H48H,nsp13:P77L,ORF3a:V202L,M:I82T","G9053T,C13168T,C16466T,G25996T,T26767C","3CLpro:I213V,N:G215C,N:D377Y,ORF3a:V202L,S:P665P,S:D950N,N:D63G,S:P681R,N:R41R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,10.87,22.55,6.18,11.51
AY.122,"B.1.617.2.122,Delta-AY.122","nsp2:K81N,nsp4:V167L,nsp13:P77L,M:I82T","G1048T,G9053T,C16466T,T26767C","N:D377Y,S:P681R,N:D63G,N:G215C,ORF3a:S26L,S:D950N,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,18.61,34.48,7.2,13.58
AY.122.1,"B.1.617.2.122.1,Delta-AY.122.1","nsp2:K81N,nsp13:P77L,S:T791I,ORF3a:P42S,M:I82T","G1048T,C16466T,C23934T,C25516T,T26767C","N:G215C,N:D377Y,S:T791I,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,35.39,86.8,0.0,0.0
AY.122.2,"B.1.617.2.122.2,Delta-AY.122.2","nsp2:K81N,nsp4:V167L,nsp13:P77L,M:I82T,ORF7a:P45L","G1048T,G9053T,C16466T,T26767C,C27527T","N:G215C,N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:G142D,S:T19R,S:A411S,S:E156G","S:T478K,S:L452R",VBM,,18.01,36.33,7.22,13.62
AY.122.3,"B.1.617.2.122.3,Delta-AY.122.3","nsp2:K81N,nsp4:V167L,nsp8:T141M,S:Q613H","G1048T,G9053T,C12513T,G23401T","S:D950N,N:D63G,S:P681R,N:D377Y,N:G215C,N:R41R,ORF3a:S26L,S:Q613H,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,29.8,68.24
AY.122.4,"B.1.617.2.122.4,Delta-AY.122.4","nsp2:K81N,nsp2:I479L,nsp4:V167L,nsp13:P77L,M:I82T","G1048T,A2240C,G9053T,C16466T,T26767C","N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,31.95,72.8,0.0,0.0
AY.122.5,"B.1.617.2.122.5,Delta-AY.122.5","nsp2:K81N,nsp4:V167L,nsp13:P77L,M:I82T","G1048T,G9053T,C16466T,T26767C","N:D377Y,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,14.85,31.46
AY.122.6,"B.1.617.2.122.6,Delta-AY.122.6","nsp2:K81N,nsp4:V167L,nsp13:P77L,S:E484A,M:I82T","G1048T,G9053T,C16466T,A23013C,T26767C","N:G215C,N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:E484A,S:L452R",VBM,,0.0,0.0,19.92,40.5
AY.124,"B.1.617.2.124,Delta-AY.124","nsp2:S263F,nsp4:V167L,3CLpro:K90R,nsp13:P77L,M:I82T","C1593T,G9053T,A10323G,C16466T,T26767C","3CLpro:K90R,N:D377Y,S:D950N,S:T95I,N:D63G,S:P681R,N:R41R,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,8.03,15.28
AY.124.1,"B.1.617.2.124.1,Delta-AY.124.1","nsp2:S263F,nsp4:V167L,3CLpro:K90R,nsp13:P77L,ORF3a:A110S,M:I82T","C1593T,G9053T,A10323G,C16466T,G25720T,T26767C","3CLpro:K90R,S:T95I,S:P681R,N:D377Y,N:G215C,N:R41R,S:D950N,N:D63G,ORF3a:G18V,ORF3a:S26L,N:A119S,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,26.51,45.13
AY.124.1.1,"B.1.617.2.124.1.1,Delta-AY.124.1.1","nsp2:S263F,nsp4:V167L,3CLpro:K90R,nsp13:P77L,ORF3a:R68I,ORF3a:A110S,M:I82T","C1593T,G9053T,A10323G,C16466T,G25595T,G25720T,T26767C","3CLpro:K90R,N:D377Y,S:P681R,N:R41R,S:D950N,S:T95I,N:D63G,N:G215C,ORF3a:G18V,ORF3a:S26L,N:A119S,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,19.54,40.95
AY.125,"B.1.617.2.125,Delta-AY.125","nsp4:V167L,RdRp:Q822H,nsp13:P77L,ORF3a:D27Y,M:I82T","G9053T,G15906T,C16466T,G25471T,T26767C","N:D377Y,S:T95I,N:R41R,N:D63G,S:P681R,ORF3a:D27Y,ORF3a:S26L,N:G215C,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,28.79,46.42,14.2,30.62
AY.126,"B.1.617.2.127,Delta-AY.127","nsp4:V167L,nsp13:P77L,S:I850L,M:I82T","G9053T,C16466T,A24110C,T26767C","N:D377Y,S:T95I,N:G215C,N:D63G,S:P681R,S:I850L,ORF3a:S26L,ORF3a:K16T,S:D950N,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,25.12,43.2,13.15,27.71
AY.127,"B.1.617.2.127,Delta-AY.127","nsp4:V167L,nsp13:P77L,ORF3a:G49V,ORF3a:T221K,M:I82T","G9053T,C16466T,G25538T,C26054A,T26767C","S:T95I,S:P681R,N:D377Y,N:G215C,N:D63G,ORF3a:S26L,S:D950N,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,9.63,19.13,12.67,24.1
AY.127.1,"B.1.617.2.127.1,Delta-AY.127.1","nsp4:V167L,nsp13:P77L,S:T859N,ORF3a:G49V,ORF3a:T221K,M:I82T","G9053T,C16466T,C24138A,G25538T,C26054A,T26767C","S:T859N,S:P681R,N:D377Y,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,9.77,19.46,16.55,34.65
AY.127.2,"B.1.617.2.127.2,Delta-AY.127.2","nsp4:V167L,nsp13:P77L,S:T859N,ORF3a:G49V,ORF3a:T221K,M:I82T,ORF10:M1I","G9053T,C16466T,C24138A,G25538T,C26054A,T26767C,G29560A","3CLpro:I106V,N:D377Y,N:D63G,S:P681R,N:G215C,S:T859N,ORF3a:S26L,S:D950N,S:G142D,S:T19R,S:K113M,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,0.0,0.0
AY.129,"B.1.617.2.129,Delta-AY.129","nsp4:V167L,nsp13:P77L,M:I82T,ORF8:I88T","G9053T,C16466T,T26767C,T28156C","N:G215C,N:D377Y,S:T95I,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,36.81,91.44,7.01,13.17
AY.13,"B.1.617.2.13,Delta-AY.13","3CLpro:P184H,nsp6:V149A,RdRp:G670S,S:T478K,ORF3a:S26L,M:I82T","C10605A,T11418C,G15451A,C22995A,C25469T,T26767C","3CLpro:P184H,N:D377Y,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R","S:T478K,S:L452R",VBM,,50.62,105.59,0.0,0.0
AY.133,"B.1.617.2.133,Delta-AY.133","nsp1:P62S,nsp13:P77L,S:T19R,S:P681R,S:V1264L,M:I82T","C449T,C16466T,C21618G,C23604G,G25352T,T26767C","N:D377Y,S:V1264L,S:A222V,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,89.4,139.96,18.9,33.08
AY.14,"B.1.617.2.14,Delta-AY.14","nsp2:S358A,nsp6:V149A,RdRp:G670S,S:T478K,ORF3a:S26L,M:I82T","T1877G,T11418C,G15451A,C22995A,C25469T,T26767C","N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,38.49,65.36,71.57,126.18
AY.15,"B.1.617.2.15,Delta-AY.15","nsp6:V149A,RdRp:G670S,S:T478K,ORF3a:S26L,M:I82T","T11418C,G15451A,C22995A,C25469T,T26767C","N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,25.87,53.38,22.56,41.4
AY.16,"B.1.617.2.16,Delta-AY.16","nsp2:P129L,RdRp:G670S,ORF3a:S26L,M:I82T","C1191T,G15451A,C25469T,T26767C","N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R","S:T478K,S:L452R",VBM,,15.8,30.65,13.26,27.86
AY.17,"B.1.617.2.17,Delta-AY.17","nsp2:I479V,nsp6:V149A,RdRp:A423V,RdRp:G670S,S:T478K,ORF3a:S26L,M:I82T","A2240G,T11418C,C14708T,G15451A,C22995A,C25469T,T26767C","N:D377Y,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,72.76,253.89
AY.2,"B.1.617.2.2,Delta-AY.2","nsp3:A328T,nsp13:T367I,S:A222V,S:K417N,M:I82T,N:R203M","G3701A,C17336T,C22227T,G22813T,T26767C,G28881T","nsp13:T367I,N:D377Y,S:A222V,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:V70F,S:T19R,S:F157-,S:E156G,S:R158-","S:K417N,S:T478K,S:L452R",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=AY,68.66,140.73,0.0,0.0
AY.20,"B.1.617.2.20,Delta-AY.20","nsp2:A419V,S:T478K,S:V1104L,ORF3a:S26L,M:I82T","C2061T,C22995A,G24872T,C25469T,T26767C","N:D377Y,S:V1104L,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,32.61,53.5,27.77,55.83
AY.22,"B.1.617.2.22,Delta-AY.22","nsp3:P1228L,RdRp:V256F,nsp13:P77L,S:Q218H,ORF3a:S26L","C6402T,G14209T,C16466T,G22216T,C25469T","S:T95I,S:V1104L,S:P681R,N:G215C,S:D950N,N:D63G,N:D377Y,ORF3a:S26L,S:Q218H,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,42.73,90.03
AY.23,"B.1.617.2.23,Delta-AY.23","nsp2:P200L,nsp3:T678I,nsp3:P1469S,nsp13:P77L,ORF3a:S26L,ORF7b:T40I,N:G215C","C1404T,C4752T,C7124T,C16466T,C25469T,C27874T,G28916T","S:V1264L,N:D377Y,S:D950N,N:D63G,S:P681R,nsp3:T678I,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,75.34,102.34,22.99,45.75
AY.23.2,"B.1.617.2.23.2,Delta-AY.23.2","nsp2:P200L,nsp3:T678I,nsp3:P1469S,nsp13:P77L,S:V1264L,ORF3a:S26L,ORF7b:T40I,N:G215C","C1404T,C4752T,C7124T,C16466T,G25352T,C25469T,C27874T,G28916T","S:V1264L,N:G215C,S:P681R,N:D63G,nsp3:T678I,N:D377Y,ORF3a:S26L,S:E702V,S:D950N,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,79.1,106.08,23.16,46.03
AY.25,"B.1.617.2.25,Delta-AY.25","RdRp:G670S,S:T478K,ORF3a:S26L,ORF3a:E239Q,M:I82T","G15451A,C22995A,C25469T,G26107C,T26767C","N:D377Y,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:S26L,ORF3a:E239Q,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,7.8,14.98,14.21,13.59
AY.25.1,"B.1.617.2.25.1,Delta-AY.25.1","nsp3:D410G,nsp6:C197F,RdRp:G670S,S:T478K,ORF3a:S26L,ORF3a:E239Q,M:I82T","A3948G,G11562T,G15451A,C22995A,C25469T,G26107C,T26767C","N:D377Y,N:D63G,S:P681R,N:G215C,ORF3a:S26L,ORF3a:E239Q,S:D950N,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,14.89,31.04,13.94,13.99
AY.25.1.1,"B.1.617.2.25.1.1,Delta-AY.25.1.1","nsp2:E587K,nsp3:D410G,nsp6:C197F,RdRp:G670S,S:T478K,S:D796Y,ORF3a:S26L,ORF3a:E239Q,M:I82T","G2564A,A3948G,G11562T,G15451A,C22995A,G23948T,C25469T,G26107C,T26767C","S:D796Y,N:G215C,S:D950N,N:D63G,S:P681R,N:D377Y,ORF3a:E239Q,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,0.0,0.0
AY.25.2,"B.1.617.2.25.2,Delta-AY.25.2","nsp9:R39K,RdRp:G670S,S:T478K,ORF3a:S26L,ORF3a:E239Q,M:I82T","G12801A,G15451A,C22995A,C25469T,G26107C,T26767C","N:G215C,N:D377Y,S:P681R,S:D950N,N:D63G,ORF3a:E239Q,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,14.08,30.33,12.2,24.32
AY.25.3,"B.1.617.2.25.3,Delta-AY.25.3","nsp9:R39K,RdRp:G670S,S:T478K,ORF3a:S26L,M:I82T","G12801A,G15451A,C22995A,C25469T,T26767C","N:G215C,S:D950N,N:D63G,S:P681R,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,14.08,30.33,12.78,23.77
AY.26,"B.1.617.2.26,Delta-AY.26","nsp6:T181I,RdRp:G670S,nsp13:P77L,S:V1264L,M:I82T,ORF6:K48N","C11514T,G15451A,C16466T,G25352T,T26767C,A27345T","N:D377Y,S:V1264L,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,17.95,36.6,32.65,66.75
AY.27,"B.1.617.2.27,Delta-AY.27","nsp2:H532Q,nsp6:T181I,nsp13:P77L,M:A81S,M:I82T","C2401A,C11514T,C16466T,G26763T,T26767C","N:D377Y,S:A222V,S:P681R,S:D950N,N:D63G,N:S412R,ORF3a:S26L,S:Q613H,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,25.72,46.6,0.0,0.0
AY.3,"B.1.617.2.3,Delta-AY.3","nsp3:A488S,nsp6:T77A,nsp6:I162V,ORF3a:S26L,N:G215C","G4181T,A11201G,A11456G,C25469T,G28916T","N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,,13.92,29.89,18.54,35.94
AY.3.1,"B.1.617.2.3.1,Delta-AY.3.1","nsp3:D309Y,nsp3:A488S,nsp6:T77A,nsp6:I162V,ORF3a:S26L,N:G215C","G3644T,G4181T,A11201G,A11456G,C25469T,G28916T","N:D377Y,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,,11.64,24.0,0.0,0.0
AY.3.2,"B.1.617.2.3.2,Delta-AY.3.2","nsp3:A488S,nsp3:T1022I,nsp6:T77A,nsp6:I162V,ORF3a:S26L,M:I82T,N:G215C","G4181T,C5784T,A11201G,A11456G,C25469T,T26767C,G28916T","N:D377Y,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,19.55,38.92,35.0,68.88
AY.3.3,"B.1.617.2.3.3,Delta-AY.3.3","nsp3:A488S,nsp6:T77A,nsp6:I162V,S:V70I,ORF3a:S26L,N:G215C","G4181T,A11201G,A11456G,G21770A,C25469T,G28916T","N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:V70I,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,28.85,56.85,0.0,0.0
AY.3.4,"B.1.617.2.3.4,Delta-AY.3.4","nsp2:G339S,nsp3:A488S,nsp3:C1347W,nsp6:I162V,ORF3a:S26L,N:G215C","G1820A,G4181T,T6760G,A11456G,C25469T,G28916T","S:P681R,N:D377Y,N:G215C,S:D950N,N:D63G,nsp3:C1347W,ORF8:V62A,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,79.24,97.8,194.77,140.13
AY.33,"B.1.617.2.33,Delta-AY.33","nsp4:V167L,RdRp:G670S,S:T19R,S:T29A,S:T250I,S:L452R,M:I82T","G9053T,G15451A,C21618G,A21647G,C22311T,T22917G,T26767C","S:T29A,N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:E156G,S:T250I","S:T478K,S:L452R",VBM,,28.52,55.96,12.64,26.37
AY.33.2,"B.1.617.2.33.2,Delta-AY.33.2","nsp4:V167L,RdRp:G670S,S:T19R,S:T29A,S:T250I,S:R346K,S:L452R,M:I82T","G9053T,G15451A,C21618G,A21647G,C22311T,G22599A,T22917G,T26767C","S:T29A,N:G215C,N:D377Y,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G,S:T250I","S:T478K,S:R346K,S:L452R",VBM,,0.0,0.0,21.22,36.3
AY.34,"B.1.617.2.34,Delta-AY.34","nsp4:V167L,RdRp:G670S,nsp13:P77L,S:T19R,S:L452R,S:Q677H","G9053T,G15451A,C16466T,C21618G,T22917G,G23593C","N:D377Y,N:G215C,S:D950N,N:D63G,S:Q677H,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,28.68,46.56,10.85,21.93
AY.34.1,"B.1.617.2.34.1,Delta-AY.34.1","nsp4:V167L,RdRp:G670S,nsp13:P77L,S:T19R,S:L1265F,N:L230F","G9053T,G15451A,C16466T,C21618G,C25355T,C28961T","S:P681R,N:L230F,S:L1265F,N:D63G,N:D377Y,N:G215C,ORF3a:S26L,S:T19R","S:T478K,S:L452R",VBM,,25.15,41.57,17.99,40.52
AY.34.2,"B.1.617.2.34.2,Delta-AY.34.2","nsp4:V167L,RdRp:G670S,nsp13:P77L,S:T19R,S:L452R,S:Q677H,S:T859I","G9053T,G15451A,C16466T,C21618G,T22917G,G23593C,C24138T","N:D377Y,S:Q677H,S:D950N,N:D63G,S:P681R,N:G215C,S:T859I,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,27.62,64.59
AY.35,"B.1.617.2.35,Delta-AY.35","nsp2:P129L,nsp3:P1103Q,nsp4:D217N,nsp15:K259R,S:L452R,M:I82T","C1191T,C6027A,G9203A,A20396G,T22917G,T26767C","N:D377Y,nsp3:P1103Q,S:D950N,N:D63G,S:P681R,ORF3a:S26L,ORF8:E19*,S:T19R,S:E156G,S:T250A,S:T250I","S:T478K,S:L452R",VBM,,23.23,48.17,0.0,0.0
AY.36,"B.1.617.2.36,Delta-AY.36","nsp3:A488S,nsp3:P1228L,nsp4:V167L,RdRp:C729R,S:T478K,S:P681R","G4181T,C6402T,G9053T,T15628C,C22995A,C23604G","S:V1104L,S:P681R,S:D950N,N:D63G,N:G215C,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,24.91,58.62,6.29,11.81
AY.37,"B.1.617.2.37,Delta-AY.37","nsp2:E460D,nsp6:T181I,RdRp:G670S,nsp13:P77L,S:T19R,S:L452R,S:T478K","G2185T,C11514T,G15451A,C16466T,C21618G,T22917G,C22995A","S:A222V,S:P681R,S:D950N,N:D63G,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,53.25,79.66,32.9,69.94
AY.39,"B.1.617.2.39,Delta-AY.39","nsp3:A488S,nsp4:V167L,ORF7a:V71I","G4181T,G9053T,G27604A","N:G215C,N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,10.78,22.13,36.79,84.87
AY.39.1,"B.1.617.2.39.1,Delta-AY.39.1","nsp4:V167L,RdRp:V14V,S:T478K,S:P681R,ORF7a:V71I","G9053T,A13482G,C22995A,C23604G,G27604A","N:G215C,N:D377Y,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,20.39,40.57,37.89,87.81
AY.39.1.1,"B.1.617.2.39.1.1,Delta-AY.39.1.1","nsp4:V167L,RdRp:V14V,S:T95I,S:T478K,S:P681R,ORF7a:V71I","G9053T,A13482G,C21846T,C22995A,C23604G,G27604A","N:D377Y,S:T95I,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,37.75,87.46
AY.39.1.2,"B.1.617.2.39.1.2,Delta-AY.39.1.2","nsp4:V167L,RdRp:V14V,S:T478K,S:P681R,ORF3a:A59V,ORF7a:V71I","G9053T,A13482G,C22995A,C23604G,C25568T,G27604A","N:D377Y,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,,,,
AY.39.1.4,"B.1.617.2.39.1.4,Delta-AY.39.1.4","nsp4:S137L,nsp4:V167L,RdRp:V14V,S:S12F,S:T478K,S:Y489Y,S:P681R,ORF3a:F43F,ORF3a:D265D,ORF7a:V71I","C8964T,G9053T,A13482G,C21597T,C22995A,C23029T,C23604G,C25521T,T26187C,G27604A","N:D377Y,N:G215C,N:D216D,S:D950N,N:D63G,S:P681R,ORF3a:D265D,S:S12F,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R,S:Y489Y",VBM,,,,,
AY.39.2,"B.1.617.2.39.2,Delta-AY.39.2","nsp3:A488S,nsp4:V167L,S:K1073N,ORF7a:V71I","G4181T,G9053T,G24781C,G27604A","S:T95I,N:G215C,S:K1073N,S:D950N,N:D63G,S:P681R,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,21.87,49.66,38.79,83.17
AY.4,"B.1.617.2.4,Delta-AY.4","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,C16466T,C25469T,C27874T,G28916T","N:G215C,S:P681R,N:D377Y,S:D950N,S:T95I,N:D63G,ORF3a:S26L,S:G142D,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=AY,18.44,36.61,7.62,14.42
AY.4.1,"B.1.617.2.4.1,Delta-AY.4.1","nsp2:T634I,nsp3:P1469S,nsp3:A1711V,nsp13:P77L,nsp15:I252L,S:G446V,ORF3a:S26L,ORF7b:T40I","C2706T,C7124T,C7851T,C16466T,A20374C,G22899T,C25469T,C27874T","N:D377Y,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:G446V,S:T478K,S:L452R",VBM,,0.0,0.0,68.96,137.23
AY.4.10,"B.1.617.2.4.10,Delta-AY.4.10","nsp3:A534V,nsp3:P1469S,nsp3:A1711V,nsp4:F17S,nsp8:T141M,nsp13:P77L,ORF3a:S26L,ORF7b:T40I,ORF8:F3L,N:G215C","C4320T,C7124T,C7851T,T8604C,C12513T,C16466T,C25469T,C27874T,T27900C,G28916T","S:P812S,N:G215C,N:D377Y,S:T95I,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,34.28,122.22
AY.4.11,"B.1.617.2.4.11,Delta-AY.4.11","nsp3:P1469S,nsp3:A1711V,nsp3:S1717L,nsp13:P77L,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,C7869T,C16466T,C25469T,C27874T,G28916T","N:D377Y,S:T95I,S:P681R,N:G215C,S:D950N,N:D63G,ORF3a:S26L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,9.18,18.22
AY.4.13,"B.1.617.2.4.13,Delta-AY.4.13","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,nsp15:P111S,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,C16466T,C19951T,C25469T,C27874T,G28916T","N:D377Y,S:T95I,N:G215C,N:D63G,S:P681R,ORF3a:S26L,S:D950N,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,20.37,39.84
AY.4.14,"B.1.617.2.4.14,Delta-AY.4.14","nsp3:S1285F,nsp3:P1469S,nsp3:A1711V,nsp13:P77L,nsp13:V348L,nsp15:K12N,S:A1078S,ORF3a:S26L,ORF7b:T40I,N:G215C","C6573T,C7124T,C7851T,C16466T,G17278T,G19656T,G24794T,C25469T,C27874T,G28916T","N:D377Y,S:T95I,S:P681R,N:G215C,S:D950N,N:D63G,S:A1078S,ORF3a:S26L,ORF3a:T269S,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,38.04,70.72
AY.4.15,"B.1.617.2.4.15,Delta-AY.4.15","nsp3:S1285F,nsp3:P1469S,nsp3:A1711V,nsp13:P77L,nsp13:V348L,S:A1078S,ORF3a:S26L,ORF7b:T40I,N:G215C","C6573T,C7124T,C7851T,C16466T,G17278T,G24794T,C25469T,C27874T,G28916T","S:T95I,N:G215C,S:D950N,N:D63G,S:P681R,S:A1078S,ORF3a:T269S,N:D377Y,ORF3a:S26L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,25.94,42.22
AY.4.2,"B.1.617.2.4.2,Delta-AY.4.2,VUI-21OCT-01,Delta Plus","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,S:Y145H,S:A222V,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,C16466T,T21995C,C22227T,C25469T,C27874T,G28916T","N:G215C,N:D377Y,S:A222V,S:T95I,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:G142D,S:T19R,S:E156G,S:Y145H","S:T478K,S:L452R",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=AY,19.69,42.13,11.62,24.51
AY.4.2.1,"B.1.617.2.4.2.1,Delta-AY.4.2.1,VUI-21OCT-01,Delta Plus","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,S:V36F,S:A222V,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,C16466T,G21668T,C22227T,C25469T,C27874T,G28916T","N:G215C,N:D377Y,S:V36F,S:A222V,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,11.63,24.6
AY.4.2.2,"B.1.617.2.4.2.2,Delta-AY.4.2.2,VUI-21OCT-01,Delta Plus","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,S:Y145H,S:A222V,S:V1264L,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,C16466T,T21995C,C22227T,G25352T,C25469T,C27874T,G28916T","N:D377Y,S:V1264L,S:A222V,S:T95I,S:P681R,N:G215C,N:D63G,ORF3a:S26L,S:D950N,S:G142D,S:T19R,S:E156G,S:Y145H","S:T478K,S:L452R",VBM,,0.0,0.0,0.0,0.0
AY.4.2.3,"B.1.617.2.4.2.3,Delta-AY.4.2.3,VUI-21OCT-01,Delta Plus","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,S:Y145H,S:A222V,ORF3a:S26L,M:A2S,ORF7b:T40I,N:G215C","C7124T,C7851T,C16466T,T21995C,C22227T,C25469T,G26526T,C27874T,G28916T","N:D377Y,S:A222V,S:T95I,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,M:A2S,S:T19R,S:E156G,S:Y145H","S:T478K,S:L452R",VBM,,0.0,0.0,10.25,20.82
AY.4.2.5,"B.1.617.2.4.2.5,Delta-AY.4.2.5,Delta Plus","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,S:Y145H,S:A222V,S:Q414K,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,C16466T,T21995C,C22227T,C22802A,C25469T,C27874T,G28916T","S:A222V,S:T95I,S:P681R,N:D63G,N:G215C,N:D377Y,ORF3a:S26L,S:D950N,S:G142D,S:T19R,S:E156G,S:Y145H,S:Q414K","S:T478K,S:L452R",VBM,,0.0,0.0,0.0,0.0
AY.4.3,"B.1.617.2.4.3,Delta-AY.4.3","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,S:P26S,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,C16466T,C21638T,C25469T,C27874T,G28916T","N:D377Y,S:P26S,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,19.26,38.12
AY.4.4,"B.1.617.2.4.4,Delta-AY.4.4","nsp3:P1469S,nsp3:A1711V,RdRp:V256F,nsp13:P77L,S:L5F,S:T95I,S:S929T,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,G14209T,C16466T,C21575T,C21846T,G24348C,C25469T,C27874T,G28916T","N:D377Y,S:S929T,S:T95I,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:L5F,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,40.6,76.5
AY.4.5,"B.1.617.2.4.5,Delta-AY.4.5","nsp3:P1469S,nsp3:A1711V,RdRp:D481A,nsp13:P77L,S:T95I,S:D1259Y,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,A14882C,C16466T,C21846T,G25337T,C25469T,C27874T,G28916T","N:G215C,N:D377Y,S:D1259Y,S:T95I,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,21.6,40.63
AY.4.6,"B.1.617.2.4.6,Delta-AY.4.6","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,nsp15:P262S,ORF3a:S26L,ORF7b:T40I,N:G215C","C7124T,C7851T,C16466T,C20404T,C25469T,C27874T,G28916T","N:D377Y,S:T95I,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,N:S232G,S:G142D,S:T19R","S:T478K,S:L452R",VBM,,0.0,0.0,6.82,12.87
AY.4.7,"B.1.617.2.4.7,Delta-AY.4.7","nsp3:P1469S,nsp3:A1711V,nsp13:P77L,ORF3a:S26L,ORF7b:T40I,N:G215C,N:S327L","C7124T,C7851T,C16466T,C25469T,C27874T,G28916T,C29253T","S:V1122V,N:D377Y,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:D950N,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,24.38,47.86
AY.4.8,"B.1.617.2.4.8,Delta-AY.4.8","nsp2:T634I,nsp3:P1469S,nsp3:A1711V,nsp6:Q160K,nsp13:P77L,ORF3a:S26L,ORF3a:A33S,ORF7b:T40I,N:G215C","C2706T,C7124T,C7851T,C11450A,C16466T,C25469T,G25489T,C27874T,G28916T","N:D377Y,S:T95I,S:P681R,S:D950N,N:D63G,N:S232G,N:G215C,ORF3a:A33S,ORF3a:S26L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,18.94,35.85
AY.4.9,"B.1.617.2.4.9,Delta-AY.4.9","nsp3:P141S,nsp3:P1469S,nsp3:A1711V,nsp8:T141M,nsp13:P77L,ORF3a:S26L,ORF7b:T40I,N:G215C","C3140T,C7124T,C7851T,C12513T,C16466T,C25469T,C27874T,G28916T","S:T95I,S:P681R,N:D377Y,N:S232G,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,6.38,11.84
AY.40,"B.1.617.2.40,Delta-AY.40","nsp2:P129L,nsp13:P77L,nsp15:H234Y,S:L452R,M:I82T,N:R385K","C1191T,C16466T,C20320T,T22917G,T26767C,G29427A","nsp13:E365D,N:D377Y,S:S640P,S:V1104L,S:P681R,S:D950N,N:D63G,N:R385K,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,97.54,152.39,15.72,32.99
AY.41,"B.1.617.2.41,Delta-AY.41","RdRp:P226S,RdRp:G670S,nsp13:I334V,S:S477I,S:T478K,ORF3a:S26L,M:I82T","C14119T,G15451A,A17236G,G22992T,C22995A,C25469T,T26767C","nsp13:I334V,S:P681R,N:D377Y,N:G215C,S:D950N,N:D63G,N:A208S,ORF3a:S26L,S:G1167V,S:A262S,S:T19R,S:E156G","S:S477I,S:T478K,S:L452R",VBM,,0.0,0.0,30.12,58.54
AY.42,"B.1.617.2.42,Delta-AY.42","nsp2:V485I,nsp7:D77D,RdRp:G670S,S:T19R,S:T478K,ORF7a:T120I","G2258A,C12073T,G15451A,C21618G,C22995A,C27752T","N:G215C,S:P681R,S:D950N,N:D63G,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,50.4,72.15,12.37,25.6
AY.42.1,"B.1.617.2.42.1,Delta-AY.42.1","nsp2:V485I,nsp7:D77D,RdRp:G670S,S:T19R,S:T478K,S:T719I,ORF7a:T120I","G2258A,C12073T,G15451A,C21618G,C22995A,C23718T,C27752T","N:D377Y,S:L938F,S:T719I,S:P681R,N:G215C,S:D950N,N:D63G,ORF3a:S26L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,160.42,149.44,12.13,24.94
AY.43,"B.1.617.2.43.5,Delta-AY.43.5","nsp4:V167L,RdRp:L837I,nsp13:P77L,N:Q9L","G9053T,C15952A,C16466T,A28299T","N:D377Y,N:Q9L,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,22.31,37.22,6.84,12.87
AY.43.1,"B.1.617.2.43.1,Delta-AY.43.1","nsp4:V167L,RdRp:L837I,nsp13:P77L,ORF3a:T14I,N:Q9L","G9053T,C15952A,C16466T,C25433T,A28299T","N:D377Y,S:P681R,N:G215C,N:D63G,ORF3a:S26L,N:Q9L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,31.89,53.0
AY.43.2,"B.1.617.2.43.2,Delta-AY.43.2","nsp3:G337C,nsp4:V167L,RdRp:L837I,nsp13:P77L,N:Q9L","G3728T,G9053T,C15952A,C16466T,A28299T","N:G215C,N:D377Y,S:P681R,N:D63G,ORF3a:S26L,N:Q9L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,6.55,12.88
AY.43.3,"B.1.617.2.43.3,Delta-AY.43.3","nsp4:V167L,RdRp:L837I,nsp13:P77L,nsp15:T112I,N:Q9L","G9053T,C15952A,C16466T,C19955T,A28299T","N:G215C,N:D377Y,N:D63G,S:P681R,ORF3a:S26L,N:Q9L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,99.03,113.93,17.6,33.58
AY.43.4,"B.1.617.2.43.4,Delta-AY.43.4","nsp3:P841L,nsp4:V167L,RdRp:L837I,nsp13:P77L,S:D950N,N:Q9L","C5241T,G9053T,C15952A,C16466T,G24410A,A28299T","N:D377Y,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,N:Q9L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,22.29,40.19
AY.43.5,"B.1.617.2.43.5,Delta-AY.43.5","nsp4:V167L,RdRp:L837I,nsp13:P77L,N:Q9L,N:R195I","G9053T,C15952A,C16466T,A28299T,G28857T","N:G215C,N:D377Y,S:P681R,N:Q9L,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:N501S,S:L452R",VBM,,0.0,0.0,14.29,29.96
AY.43.6,"B.1.617.2.43.6,Delta-AY.43.6","nsp4:V167L,RdRp:L837I,nsp13:P77L,ORF7a:F6L,N:Q9L,N:V270L","G9053T,C15952A,C16466T,T27409C,A28299T,G29081T","N:G215C,N:V270L,N:D63G,S:P681R,N:D377Y,ORF3a:S26L,N:Q9L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,35.12,58.56
AY.43.8,"B.1.617.2.43.8,Delta-AY.43.8","nsp4:V167L,RdRp:L837I,nsp13:P77L,nsp13:E341D,N:Q9L","G9053T,C15952A,C16466T,G17259T,A28299T","N:D377Y,N:G215C,N:D63G,S:P681R,ORF3a:S26L,N:Q9L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,13.1,27.61
AY.43.9,"B.1.617.2.43.9,Delta-AY.43.9","nsp3:P1103S,nsp4:V167L,RdRp:L837I,nsp13:P77L,N:Q9L","C6026T,G9053T,C15952A,C16466T,A28299T","N:D377Y,nsp3:P1103S,N:D63G,S:P681R,N:G215C,ORF3a:S26L,N:Q9L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,20.73,45.42
AY.44,"B.1.617.2.44,Delta-AY.44","nsp3:A488S,RdRp:F191V,RdRp:G670S,ORF7a:T120I","G4181T,T14014G,G15451A,C27752T","N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,12.37,26.41,12.27,18.37
AY.46,"B.1.617.2.46,Delta-AY.46","nsp3:A488S,nsp6:A2V,nsp13:P77L,N:G215C","G4181T,C10977T,C16466T,G28916T","N:D377Y,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:D950N,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,20.92,41.75,7.37,13.96
AY.46.1,"B.1.617.2.46.1,Delta-AY.46.1","nsp3:A488S,nsp6:A2V,nsp13:P77L,ORF3a:L94P,N:G215C","G4181T,C10977T,C16466T,T25673C,G28916T","S:P681R,S:D950N,N:D63G,N:D377Y,N:G215C,ORF3a:S26L,S:G142D,S:T19R","S:T478K,S:L452R",VBM,,19.97,39.41,0.0,0.0
AY.46.4,"B.1.617.2.46.4,Delta-AY.46.4","nsp3:A488S,nsp6:A2V,nsp13:P77L,S:E661D,N:G215C","G4181T,C10977T,C16466T,G23545T,G28916T","S:E661D,N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R","S:T478K,S:L452R",VBM,,30.62,50.78,38.67,104.03
AY.46.5,"B.1.617.2.46.5,Delta-AY.46.5","nsp3:A488S,nsp6:A2V,RdRp:T710I,nsp13:P77L,N:G215C","G4181T,C10977T,C15569T,C16466T,G28916T","N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:T19R","S:T478K,S:L452R",VBM,,0.0,0.0,10.26,21.2
AY.47,"B.1.617.2.47,Delta-AY.47","nsp3:E815D,nsp4:A446V,RdRp:G670S,S:T19R,S:V289I,ORF7a:T120I,N:G18V","G5164T,C9891T,G15451A,C21618G,G22427A,C27752T,G28326T","S:V289I,N:D377Y,S:P681R,N:G18V,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,29.09,50.71,0.0,0.0
AY.48,"B.1.617.2.48,Delta-AY.48","nsp2:P129L,nsp4:D217N,nsp15:K259R,S:L452R,M:I82T,ORF8:E19*","C1191T,G9203A,A20396G,T22917G,T26767C,G27948T","N:D377Y,nsp3:P1103Q,S:D950N,N:D63G,S:P681R,ORF3a:S26L,ORF8:E19*,S:T19R,S:E156G,S:T250A,S:T250I","S:T478K,S:L452R",VBM,,50.35,81.64,0.0,0.0
AY.49,"B.1.617.2.49,Delta-AY.49","nsp13:P77L,S:T19R,S:Q493E,ORF3a:P240S,ORF8:Q29L","C16466T,C21618G,C23039G,C26110T,A27979T","N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:K854N,ORF3a:P240S,S:T19R,S:E156G","S:T478K,S:L452R,S:Q493E",VBM,,38.81,84.69,0.0,0.0
AY.5,"B.1.617.2.5,Delta-AY.5","nsp3:P1469S,nsp13:P77L,S:V1122V,ORF3a:S26L,ORF7b:T40I,N:S327L","C7124T,C16466T,G24928T,C25469T,C27874T,C29253T","N:D377Y,S:V1122V,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,,26.14,46.04,15.5,16.7
AY.5.1,"1.617.2.5.1,Delta-AY.5.1","nsp3:P1469S,nsp13:P77L,ORF3a:S26L,M:N207K,ORF7b:T40I,N:S327L","C7124T,C16466T,C25469T,C27143A,C27874T,C29253T","N:G215C,N:D377Y,S:V1122V,S:D950N,N:D63G,S:P681R,ORF3a:S26L,M:N207K,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,571.94,334.07
AY.5.2,"1.617.2.5.2,Delta-AY.5.2","nsp3:P1469S,nsp8:T93I,nsp13:P77L,ORF3a:S26L,ORF7b:T40I,N:S327L","C7124T,C12369T,C16466T,C25469T,C27874T,C29253T","S:V1122V,S:P681R,S:D950N,N:D63G,N:G215C,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,661.67,353.42
AY.5.3,"1.617.2.5.3,Delta-AY.5.3","nsp3:P1469S,nsp3:T1590I,nsp13:P77L,S:V1122V,ORF3a:S26L,ORF7b:T40I,N:S327L","C7124T,C7488T,C16466T,G24928T,C25469T,C27874T,C29253T","N:G215C,N:D377Y,S:V1122V,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,64.94,85.83,0.0,0.0
AY.5.4,"B.1.617.2.5.4,Delta-AY.5.4","nsp2:P129L,nsp3:P1469S,nsp13:P77L,ORF3a:S26L,ORF7b:T40I,N:S327L","C1191T,C7124T,C16466T,C25469T,C27874T,C29253T","N:D377Y,S:V1122V,S:P681R,N:G215C,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,54.41,97.9
AY.5.5,"B.1.617.2.5.5,Delta-AY.5.5","nsp3:P1469S,nsp13:P77L,nsp13:E319D,ORF3a:S26L,ORF7b:T40I,N:S327L","C7124T,C16466T,G17193T,C25469T,C27874T,C29253T","nsp13:E319D,N:D377Y,S:V1122V,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,56.05,85.01
AY.51,"B.1.617.2.51,Delta-AY.51","nsp4:A446V,RdRp:G670S,S:T19R,ORF3a:Q57R,ORF3a:E102V,ORF7a:L116F,ORF7a:T120I","C9891T,G15451A,C21618G,A25562G,A25697T,C27739T,C27752T","S:P681R,N:D377Y,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,22.65,42.96
AY.52,"B.1.617.2.52,Delta-AY.52","nsp4:A446V,RdRp:G670S,S:T19R,E:V62F,ORF7a:L116F,ORF7a:T120I,N:T49I","C9891T,G15451A,C21618G,G26428T,C27739T,C27752T,C28419T","S:P681R,N:D377Y,S:D950N,N:D63G,ORF3a:S26L,S:L1141W,N:T49I,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,49.51,101.79,0.0,0.0
AY.53,"B.1.617.2.53,Delta-AY.53","nsp2:Q496P,RdRp:G670S,nsp13:P77L,S:A27S,ORF3a:S26L,ORF7a:L116F","A2292C,G15451A,C16466T,G21641T,C25469T,C27739T","S:A27S,N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,102.62,203.02
AY.54,"B.1.617.2.54,Delta-AY.54","nsp2:P129L,nsp4:A446V,RdRp:G670S,nsp13:P77L,ORF3a:S26L,ORF7a:L116F","C1191T,C9891T,G15451A,C16466T,C25469T,C27739T","N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,25.95,53.57,22.31,41.08
AY.56,"B.1.617.2.56,Delta-AY.56","nsp3:P822L,RdRp:G670S,nsp13:P77L,ORF3a:S26L,ORF3a:H78Y,M:I82T,ORF7b:E39*","C5184T,G15451A,C16466T,C25469T,C25624T,T26767C,G27870T","S:S680F,S:P681R,S:D950N,N:D63G,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,35.99,72.97,0.0,0.0
AY.6,"B.1.617.2.6,Delta-AY.6","nsp2:D511N,nsp3:A488S,nsp13:E365D,S:T19R,S:P681R,N:D377Y","G2336A,G4181T,G17331T,C21618G,C23604G,G29402T","nsp13:E365D,N:G215C,S:D950N,N:D63G,S:P681R,N:D377Y,ORF3a:S26L,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,,0.0,0.0,14.5,30.12
AY.60,"B.1.617.2.60,Delta-AY.60","nsp3:P822L,nsp4:I27T,RdRp:G670S,nsp13:P77L,nsp13:A296S,S:A222V,ORF3a:S26L","C5184T,T8634C,G15451A,C16466T,G17122T,C22227T,C25469T","S:A222V,S:P681R,S:D950N,N:D63G,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,58.58,116.19
AY.62,"B.1.617.2.62,Delta-AY.62","nsp2:G339S,RdRp:G670S,nsp13:P77L,S:A222V,ORF3a:S26L,ORF8:S67F","G1820A,G15451A,C16466T,C22227T,C25469T,C28093T","S:A222V,N:D377Y,S:D950N,N:D63G,S:P681R,ORF8:S67F,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,26.07,62.34,0.0,0.0
AY.64,"B.1.617.2.64,Delta-AY.64","nsp3:P822L,nsp3:T1022I,RdRp:G670S,nsp13:P77L,S:K1191N,ORF3a:S26L","C5184T,C5784T,G15451A,C16466T,G25135T,C25469T","S:K1191N,N:D377Y,S:A222V,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,29.83,60.62,0.0,0.0
AY.65,"B.1.617.2.65,Delta-AY.65","nsp3:P822L,RdRp:M196I,RdRp:G670S,nsp13:P77L,S:V1264L,ORF3a:S26L","C5184T,G14028T,G15451A,C16466T,G25352T,C25469T","S:V1264L,N:D377Y,S:A222V,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,66.04,88.59,12.99,27.65
AY.67,"B.1.617.2.67,Delta-AY.67","nsp3:T724I,RdRp:G670S,nsp13:P77L,ORF3a:S26L,ORF6:Q56R","C4890T,G15451A,C16466T,C25469T,A27368G","S:A222V,S:P681R,S:D950N,N:D63G,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,45.06,75.11,0.0,0.0
AY.68,"B.1.617.2.68,Delta-AY.68","nsp3:P192L,nsp3:T1830I,RdRp:G670S,nsp13:P77L,S:A222V,ORF3a:S26L","C3294T,C8208T,G15451A,C16466T,C22227T,C25469T","S:A222V,S:D979E,S:P681R,S:D950N,N:D63G,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,93.3,177.07
AY.7,"B.1.617.2.7,Delta-AY.7","nsp3:A488S,nsp9:Q11H,ORF7a:C58F,ORF7a:A79D","G4181T,G12718T,G27566T,C27629A","S:P681R,N:D377Y,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,,0.0,0.0,43.0,91.71
AY.7.1,"B.1.617.2.7.1,Delta-AY.7.1","nsp3:A488S,nsp9:Q11H,ORF7a:C58F,ORF7a:A79D","G4181T,G12718T,G27566T,C27629A","N:D377Y,S:P681R,N:G215C,S:D950N,N:D63G,ORF3a:S26L,S:T19R","S:T478K,S:L452R",VBM,,0.0,0.0,58.52,191.13
AY.7.2,"B.1.617.2.7.2,Delta-AY.7.2","nsp3:A488S,nsp9:Q11H,ORF3a:G18V,ORF7a:C58F,ORF7a:A79D","G4181T,G12718T,G25445T,G27566T,C27629A","N:D377Y,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:G18V,ORF3a:S26L,S:T19R","S:T478K,S:L452R",VBM,,0.0,0.0,47.64,129.38
AY.70,"B.1.617.2.70,Delta-AY.70","S:R21T,S:A222V,M:I82T,N:R203M,N:R209I","G21624C,C22227T,T26767C,G28881T,G28899T","S:A222V,S:P681R,S:R21T,N:D377Y,S:D950N,N:D63G,N:R209I,ORF3a:S26L,N:M210I,S:T19R,S:E156G","S:T478R,S:L452R",VBM,,0.0,0.0,31.06,63.21
AY.71,"B.1.617.2.71,Delta-AY.71","nsp2:P568P,nsp13:P77L,S:A222V,S:S1252F,M:I82T","C2509T,C16466T,C22227T,C25317T,T26767C","nsp13:H164Y,N:D377Y,S:S1252F,S:A222V,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478R,S:L452R",VBM,,0.0,0.0,26.0,54.65
AY.72,"B.1.617.2.72,Delta-AY.72","nsp3:D1121Y,S:T19R,S:A222V,ORF3a:D155G,M:I82T,N:R203M","G6080T,C21618G,C22227T,A25856G,T26767C,G28881T","N:D377Y,S:A222V,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,25.32,47.83
AY.74,"B.1.617.2.74,Delta-AY.74","nsp2:P568P,S:T19R,S:L452R,M:I82T,N:K373N,N:D377Y","C2509T,C21618G,T22917G,T26767C,G29392T,G29402T","N:K373N,N:D377Y,S:A222V,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,32.76,56.03,0.0,0.0
AY.75,"B.1.617.2.75,Delta-AY.75","nsp6:V149A,RdRp:G670S,nsp13:P77L,S:A222V,ORF3a:G224C,M:S197N","T11418C,G15451A,C16466T,C22227T,G26062T,G27112A","N:D377Y,S:A222V,S:D950N,M:S197N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,24.2,49.61,0.0,0.0
AY.77,"B.1.617.2.77,Delta-AY.77","3CLpro:P108S,S:T19R,S:L452R,S:D950N,ORF6:Y49H,N:R203M","C10376T,C21618G,T22917G,G24410A,T27346C,G28881T","3CLpro:P108S,N:D377Y,N:G215C,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,31.72,65.03,0.0,0.0
AY.8,"B.1.617.2.8,Delta-AY.8","nsp2:P129L,nsp3:P822L,RdRp:I243V,ORF7a:L116F","C1191T,C5184T,A14170G,C27739T","N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,,0.0,0.0,61.77,137.86
AY.81,"B.1.617.2.81,Delta-AY.81","nsp3:A488S,S:D1260Y,M:I82T,ORF8:I47V","G4181T,G25340T,T26767C,A28032G","S:P681R,S:D1260Y,S:D950N,N:D63G,N:G215C,S:A694V,ORF8:A65V,N:D377Y,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,32.01,78.88,0.0,0.0
AY.87,"B.1.617.2.87,Delta-AY.87","nsp2:T429I,nsp3:A488S,nsp8:T187I,RdRp:G670S,S:P681R,ORF3a:S26L","C2091T,G4181T,C12651T,G15451A,C23604G,C25469T","nsp13:T307I,N:D377Y,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,53.1,112.42
AY.9,"B.1.617.2.9,Delta-AY.9","nsp4:A446V,nsp6:T181I,S:A222V,S:I410I,S:L452R,S:T478K","C9891T,C11514T,C22227T,C22792T,T22917G,C22995A","S:I410I,N:D377Y,S:A222V,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:F157-,S:E156G,S:R158-","S:T478K,S:L452R",VBM,,20.71,38.05,12.49,25.9
AY.9.1,"B.1.617.2.9.1,Delta-AY.9.1","nsp6:T181I,RdRp:R197Q,S:A222V","C11514T,G14030A,C22227T","S:I410I,N:D377Y,S:A222V,S:P681R,S:D950N,N:D63G,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,0.0,0.0
AY.90,"B.1.617.2.90,Delta-AY.90","nsp6:L37F,nsp13:P77L,ORF3a:S26L,ORF3a:S180F,ORF8:V33F","G11083T,C16466T,C25469T,C25931T,G27990T","N:D377Y,ORF3a:S180F,S:D950N,N:D63G,S:P681R,ORF3a:S26L,N:G215C,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,21.51,49.78
AY.91,"B.1.617.2.91,Delta-AY.91","nsp2:F356L,nsp3:A488S,RdRp:G670S,nsp13:P77L,ORF3a:S26L,ORF8:R115C","T1871C,G4181T,G15451A,C16466T,C25469T,C28236T","N:D377Y,S:P681R,S:D950N,N:D63G,N:G215C,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,14.73,22.12
AY.94,"B.1.617.2.94,Delta-AY.94","nsp3:A488S,nsp3:Q1216H,RdRp:G670S,nsp13:P77L,nsp13:V247F,ORF3a:S26L","G4181T,G6367T,G15451A,C16466T,G16975T,C25469T","N:G215C,N:D377Y,S:D950N,N:D63G,S:P681R,ORF3a:S26L,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,0.0,0.0,42.58,88.46
AY.98,"B.1.617.2.98,Delta-AY.98","nsp1:E87D,nsp3:A488S,RdRp:G670S,nsp13:P77L,ORF3a:S26L","G526T,G4181T,G15451A,C16466T,C25469T","N:D377Y,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,S:G142D,S:T19R,S:E156G","S:T478K,S:L452R",VBM,,34.12,52.87,19.54,39.02
AY.98.1,"B.1.617.2.98.1,Delta-AY.98.1","nsp1:E87D,nsp3:A488S,RdRp:G670S,nsp13:P77L,S:P251L,ORF3a:S26L,ORF8:A65S","G526T,G4181T,G15451A,C16466T,C22314T,C25469T,G28086T","N:D377Y,S:P681R,S:D950N,N:D63G,N:G215C,ORF8:A65S,ORF3a:S26L,nsp3:E906D,S:T19R,S:E156G,S:P251L","S:T478K,S:L452R",VBM,,32.54,50.75,25.0,42.73
AY.98.1.1,"B.1.617.2.98.1.1,Delta-AY.98.1.1","nsp1:E87D,nsp3:A488S,RdRp:G670S,nsp13:P77L,S:P251L,ORF3a:S26L,ORF3a:Y109C,ORF8:A65S","G526T,G4181T,G15451A,C16466T,C22314T,C25469T,A25718G,G28086T","N:D377Y,S:P681R,N:G215C,S:D950N,N:D63G,ORF8:A65S,ORF3a:S26L,nsp3:E906D,S:T19R,S:E156G,S:P251L","S:T478K,S:L452R",VBM,,0.0,0.0,18.31,37.49
B.1,B.1,"nsp3:F106F,RdRp:P323L,S:D614G","C3037T,C14408T,A23403G",S:D614G,,,,,,,
B.1.1,B.1.1,"nsp3:F106F,RdRp:P323L,S:D614G,N:R203K,N:R203R,N:G204R","C3037T,C14408T,A23403G,G28881A,G28882A,G28883C",S:D614G,,,,,,,
B.1.1.1,B.1.1.1,"nsp3:T428I,3CLpro:G15S,N:R203K,N:R203R,N:G204R","C4002T,G10097A,G28881A,G28882A,G28883C","3CLpro:G15S,S:P681H,nsp3:T428I",S:L452R,,,,,,
B.1.1.28,B.1.1.28,S:V1176F,G25088T,S:V1176F,,,,,,,
B.1.1.298,"ΔFVI-spike,deltaFVI-spike,mink cluster 5,DCGC-3024,B.1.1.298, Denmark","RdRp:T739I,S:Y453F,ORF3a:H182Y","C15656T,A22920T,C25936T",ORF3a:H182Y,S:Y453F,,,,,,
B.1.1.316,B.1.1.316,"nsp3:A231V,nsp8:D143G,S:Q677H,S:T732S","C3411T,A12519G,G23593C,A23756T","S:T732S,S:Q677H",,,,,,,
B.1.1.318,VUI-202102/04,"nsp3:K1693N,nsp4:A446V,S:T95I,S:E484K,M:I82T","G7798T,C9891T,C21846T,G23012A,T26767C","S:D796H,S:P681H,N:A208G,S:T95I,N:R209-,S:Y144-",S:E484K,,,,,,
B.1.1.33,B.1.1.33,"ORF6:I33T,N:R203K,N:R203R,N:G204R","T27299C,G28881A,G28882A,G28883C",N:I292T,,,,,,,
B.1.1.330,B.1.1.330,nsp3:S1212L,C6354T,"nsp13:S166L,S:M153T",,,,,,,
B.1.1.337,B.1.1.337,"nsp2:T547I,nsp3:S702F,nsp3:F961L,nsp3:A1305V,nsp7:L40I,S:A1078T,ORF3a:M125I","C2445T,C4824T,T5600C,C6633T,C11960A,G24794A,G25767T","S:A1078T,nsp7:L40I",,,,,,,
B.1.1.370,B.1.1.370,"nsp2:S196L,nsp3:V188F,N:R203K,N:G204R","C1392T,G3281T,G28881A,G28883C","S:D1146D,S:F135F,S:P139-,S:N679K,S:L141-,S:C136-,S:D138-,S:N137-,N:R209I,ORF3a:V273V,S:G142-,S:F140-,S:V143-,S:Y144-",,,,,,,
B.1.1.482,B.1.1.482,"nsp1:L16L,M:H125Y,N:R203K,N:G204R","C313T,C26895T,G28881A,G28883C","nsp13:T481M,S:D80G,S:T95I,S:D1139H,N:I157V,S:P681H,S:G142D","S:E484K,S:N439K",,,,,,
B.1.1.519,B.1.1.519,"nsp4:T492I,S:T478K,S:P681H,S:T732A","C10029T,C22995A,C23604A,A23756G","S:T732A,S:P681H",S:T478K,,,,,,
B.1.1.522,B.1.1.522,"S:D138N,S:P681H,ORF3a:D173G,ORF8:D119Y","G21974A,C23604A,A25910G,G28248T","ORF3a:D173G,S:P681H,S:D138N,ORF3a:F28L",,,,,,,
B.1.1.523,B.1.1.523,"nsp2:N269D,nsp6:V84F,nsp13:P77L,S:E484K,S:S494P,S:T1027I,ORF3a:S171L","A1610G,G11222T,C16466T,G23012A,T23042C,C24642T,C25904T","S:F306L,S:T1027I,S:D839V,S:E780A,ORF3a:V201F,N:G212C,S:F157-,S:E156-,S:R158-","S:S494P,S:E484K",,,,,,
B.1.1.529,"Omicron,21M","nsp4:T492I,3CLpro:P132H,S:H655Y,E:T9I","C10029T,C10449A,C23525T,C26270T","3CLpro:P132H,S:A67V,S:N969K,S:N764K,S:T95I,S:L981F,E:T9I,S:N679K,S:P681H,S:T547K,N:S33-,S:D796Y,N:P13L,N:R32-,N:G30G,S:N856K,M:D3G,M:Q19E,N:E31-,S:H655Y,S:Q954H,S:V70-,S:G142D,S:H69-,S:N211I,S:L212-,S:V143-,S:Y145-,S:Y144-","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371L,S:G339D,S:G446S,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,3.96,7.5,3.57,6.51
B.1.1.7,"VOC 202012/01,501Y.V1,VOC-20DEC-01,20I/501Y.V1,GRY (formerly GR/501Y.V1),Alpha ","nsp3:T183I,S:N501Y,S:A570D,S:P681H,S:T716I,S:S982A,S:D1118H,ORF8:Q27*,ORF8:Y73C,N:S235F","C3267T,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,A28111G,C28977T","N:D3L,S:A570D,S:T716I,S:S982A,S:D1118H,N:S235F,S:P681H,ORF8:Y73C,ORF8:Q27*,S:Y144-",S:N501Y,VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.1.7,16.41,34.64,15.43,32.8
B.1.177,"20A.EU1,20E (EU1)","S:A222V,N:A220V,ORF10:V30L","C22227T,C28932T,G29645T","N:A220V,S:A222V",,,,,,,
B.1.177.64,B.1.177.64,"RdRp:V666I,S:L18F,S:A222V,N:A220V,ORF10:V30L","G15439A,C21614T,C22227T,C28932T,G29645T","S:L18F,S:A222V,N:A220V",,,,,,,
B.1.2,20G,"nsp3:M1788I,ORF3a:Q57H,N:P199L","G8083A,G25563T,C28869T","3CLpro:L89F,ORF3a:G172V,ORF8:S24L,N:P67S",,,,,,,
B.1.214,B.1.214,"nsp3:I580V,nsp3:T1063I,GFL:T51I,N:T205I","A4457G,C5907T,C13176T,C28887T","3CLpro:I78V,ORF3a:G172C,ORF3a:I20-,ORF3a:A23-,ORF3a:S26-,ORF3a:F28-,ORF3a:K21-,ORF3a:D22-,ORF3a:T24-,ORF3a:P25-,ORF3a:D27-,S:L5F,S:Q414K",S:N450K,,,,,,
B.1.214.2,B.1.214.2,"nsp3:I580V,nsp3:T1063I,nsp8:A74V,S:T716I,N:T205I","A4457G,C5907T,C12312T,C23709T,C28887T","N:D3L,S:T716I,S:Q414K",S:N450K,,,,,,
B.1.243,B.1.243,"nsp3:F106F,nsp15:L216L,S:G838G,N:S194L","C3037T,A20268G,T24076C,C28854T",S:G838G,,,,,,,
B.1.243.1,B.1.243.1,"nsp13:T588I,S:V213G,S:E484K,N:S194L","C17999T,T22200G,G23012A,C28854T","nsp13:T588I,S:V213G",S:E484K,,,,,,
B.1.258,B.1.258,"nsp3:I1683T,nsp13:H290Y,S:N439K","T7767C,C17104T,C22879A",nsp13:H290Y,S:N439K,,,,,,
B.1.258.17,B.1.258.17,"nsp3:I1683T,nsp9:M101I,RdRp:V719I,nsp13:A598S,S:L189F,S:V772I,ORF3a:Q185H","T7767C,G12988T,G15598A,G18028T,C22127T,G23876A,G25947T","nsp13:P53L,nsp13:H290Y,S:V772I,S:L189F,ORF3a:Q185H",S:N439K,,,,,,
B.1.351,"501Y.V2,20H/501Y.V2,VOC-20DEC-02,VOC-202012/02,GH/501Y.V2,Beta","nsp3:K837N,3CLpro:K90R,S:K417N,S:A701V,E:P71L,N:T205I","G5230T,A10323G,G22813T,C23664T,C26456T,C28887T","3CLpro:K90R,S:D80A,S:A701V,S:D215G","S:K417N,S:E484K,S:N501Y",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.351,14.52,30.19,16.78,35.52
B.1.351.2,B.1.351.2,"nsp3:N1778S,3CLpro:A193V,S:L18F,S:K417N,S:A701V,E:P71L,N:T205I","A8052G,C10632T,C21614T,G22813T,C23664T,C26456T,C28887T","3CLpro:K90R,3CLpro:A193V,S:A243-,S:D80A,S:L242-,S:A701V,S:L18F,nsp3:N1778S,S:D215G,S:L244-","S:K417N,S:E484K,S:N501Y",VBM,,0.0,0.0,78.65,128.34
B.1.351.3,B.1.351.3,"nsp3:P1228L,nsp3:N1778S,nsp13:I151V,S:L18F,S:K417N,E:P71L,N:T205I","C6402T,A8052G,A16687G,C21614T,G22813T,C26456T,C28887T","3CLpro:K90R,nsp13:I151V,S:A243-,S:D80A,S:L242-,S:A701V,S:L18F,nsp3:N1778S,S:D215G,S:L244-","S:K417N,S:E484K,S:N501Y",VBM,,0.0,0.0,723.12,831.91
B.1.36,20A/N.194L,"ORF3a:Q57H,N:S194L","G25563T,C28854T",,,,,,,,
B.1.36.1,B.1.36.1,"nsp8:R51C,ORF3a:Q57H,N:S194L","C12242T,G25563T,C28854T",,,,,,,,
B.1.36.26,B.1.36.26,"nsp2:R246C,nsp6:T96I,S:L54F,ORF3a:Q57H,ORF3a:G251D,N:S194L,N:T362I","C1541T,C11259T,G21724T,G25563T,G26144A,C28854T,C29358T","N:T362I,S:L54F,ORF3a:G251D",,,,,,,
B.1.427,"20C/S:484K,20C/S:452R,GH/452R.V1,Epsilon","nsp4:S395T,nsp13:P53L,nsp13:D260Y,S:S13I,S:W152C,S:L452R,M:F53F,N:T205I","G9738C,C16394T,G17014T,G21600T,G22018T,T22917G,C26681T,C28887T","nsp13:P53L,M:F53F,S:S13I,S:W152C",S:L452R,VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.427,47.02,89.62,0.0,0.0
B.1.429,"CAL.20C,GH/452R.V1,20C/S.452R,Epsilon","nsp9:I65V,nsp13:D260Y,S:S13I,S:W152C,S:L452R,N:T205I","A12878G,G17014T,G21600T,G22018T,T22917G,C28887T","3CLpro:V104I,S:Q677H,N:M234I,ORF3a:A23V,S:S13I,N:P142S,S:W152C",S:L452R,VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.427,15.35,43.32,0.0,0.0
B.1.429.1,B.1.429.1,"nsp9:I65V,nsp13:D260Y,S:S13I,S:W152C,S:L452R,S:Q677H,nsp9:I65V,nsp13:D260Y,S:S13I,S:W152C,S:L452R,S:Q677H,N:T205I","A12878G,G17014T,G21600T,G22018T,T22917G,G23593C,A12878G,G17014T,G21600T,G22018T,T22917G,G23593T,C28887T","3CLpro:V104I,S:Q677H,S:S13I,S:W152C",S:L452R,VBM,,0.0,0.0,0.0,0.0
B.1.429.2,B.1.429.2,"nsp4:F64L,nsp9:I65V,nsp13:D260Y,S:S13I,S:W152C,S:L452R,S:Q677H,ORF3a:A23V,N:P142S,nsp4:F64L,nsp9:I65V,nsp13:D260Y,S:S13I,S:W152C,S:L452R,S:Q677H,ORF3a:A23V,N:P142S","T8744C,A12878G,G17014T,G21600T,G22018T,T22917G,G23593C,C25460T,C28697T,T8744C,A12878G,G17014T,G21600T,G22018T,T22917G,G23593T,C25460T,C28697T","3CLpro:V104I,S:Q677H,N:M234I,ORF3a:A23V,S:S13I,N:P142S,S:W152C",S:L452R,VBM,,0.0,0.0,0.0,0.0
B.1.466,B.1.466,"ORF3a:Q57H,N:T205I","G25563T,C28887T",,,,,,,,
B.1.466.1,B.1.466.1,"nsp3:P1200Q,S:N439K,ORF3a:Q57H,N:T205I","C6318A,C22879A,G25563T,C28887T","N:K249R,ORF3a:P240L",S:N439K,,,,,,
B.1.466.2,B.1.466.2,"nsp3:P822L,S:N439K,S:P681R,ORF3a:Q57H,N:T205I","C5184T,C22879A,C23604G,G25563T,C28887T",S:P681R,S:N439K,,,,,,
B.1.517,20C/S.501T,"S:N501T,ORF3a:Q57H","A23064C,G25563T",,S:N501T,,,,,,
B.1.525,"20A/S:484K,VUI-21FEB-03,VUI-202102/03,G/484K.V3,20A/S484K,Eta ","S:Q52R,S:E484K,S:Q677H,S:F888L,M:I82T","A21717G,G23012A,G23593C,T24224C,T26767C","N:D3-,S:Q52R,S:Q677H",S:E484K,VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.525,92.06,183.95,94.96,189.76
B.1.526,"20C/S:484K,GH,Iota","nsp4:L438P,S:L5F,S:T95I,S:D253G,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,N:P199L,N:M234I","T9867C,C21575T,C21846T,A22320G,C25517T,G25563T,C27925T,C28869T,G28975A","nsp13:Q88H,S:T95I,N:M234I,S:L5F,S:D253G","S:E484K,S:S477N",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.526,39.87,83.43,0.0,0.0
B.1.526.1,B.1.526.1,"nsp4:K399E,nsp6:V278I,S:D80G,S:F157S,S:D950H,ORF3a:P42L,ORF8:A51S,N:M234I","A9749G,G11804A,A21801G,T22032C,G24410C,C25517T,G28044T,G28975A","S:T859N,S:D80G,N:M234I,S:D950H,S:F157S,S:Y144-",S:L452R,VBM,,36.13,75.53,0.0,0.0
B.1.526.2,B.1.526.2,"nsp2:T85I,nsp4:L438P,nsp13:Q88H,S:L5F,S:T95I,S:D253G,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I","C1059T,T9867C,A16500C,C21575T,C21846T,A22320G,C25517T,G25563T,C27925T","nsp13:Q88H,S:T95I,S:Q957R,N:P13L,S:L5F,S:D253G",S:S477N,VBM,,39.18,81.9,0.0,0.0
B.1.575,B.1.575,"nsp2:T85I,nsp4:T492I,nsp6:T181I,S:S494P,S:P681H,S:T716I,ORF3a:Q57H,M:I82T,N:T205I","C1059T,C10029T,C11514T,T23042C,C23604A,C23709T,G25563T,T26767C,C28887T","S:T716I,S:P681H,ORF8:S67F",S:S494P,,,,,,
B.1.596,B.1.596,"nsp2:T85I,3CLpro:L89F,ORF3a:Q57H,ORF3a:G172V,ORF8:S24L,N:P67S,N:P199L","C1059T,C10319T,G25563T,G25907T,C27964T,C28472T,C28869T","3CLpro:L89F,ORF3a:G172V,N:P67S,ORF8:S24L",,,,,,,
B.1.616,B.1.616,"nsp2:T85I,nsp6:L37F,S:D215G,ORF3a:Q57H","C1059T,G11083T,A22206G,G25563T","S:H655Y,S:N1187D,S:Q949R,S:G669S,S:D215G,S:G142V,S:H66D",S:V483A,,,,,,
B.1.617,B.1.617,"nsp3:T749I,nsp13:M429I,S:D111D,S:L452R,S:E484Q,S:P681R,ORF3a:S26L","C4965T,G17523T,T21895C,T22917G,G23012C,C23604G,C25469T","S:P681R,S:Q1071H,ORF3a:S26L,S:G142D,S:D111D,S:E154K","S:E484Q,S:L452R",,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.617,,,,
B.1.617.1,"21A/S:154K ,G/452R.V3,Kappa","nsp6:T77A,nsp13:M429I,nsp15:K259R,S:E484Q,ORF7a:V82A","A11201G,G17523T,A20396G,G23012C,T27638C","N:D377Y,S:P681R,S:Q1071H,ORF3a:S26L","S:E484Q,S:L452R",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.617,891.87,896.36,127.81,224.9
B.1.617.2,Delta,"nsp2:P129L,nsp4:D217N,nsp15:K259R,M:I82T,nsp3:P822L,nsp13:P77L,S:P681R,ORF3a:S26L,M:I82T,nsp3:A488S,nsp3:P1228L,nsp13:P77L,S:P681R,ORF3a:S26L,M:I82T","C1191T,G9203A,A20396G,T26767C,C5184T,C16466T,C23604G,C25469T,T26767C,G4181T,C6402T,C16466T,C23604G,C25469T,T26767C","N:D377Y,nsp3:P1103Q,S:D950N,N:D63G,S:P681R,N:G215C,ORF3a:S26L,ORF8:E19*,S:G142D,S:T19R,S:K77T,S:F157-,S:E156G,S:R158-","S:T478K,S:E484Q,S:L452R",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.617.2,7.85,15.1,7.14,13.42
B.1.617.3,B.1.617.3,"nsp3:T1830I,S:T19R,S:L452R,S:E484Q,S:P681R,N:D377Y","C8208T,C21618G,T22917G,G23012C,C23604G,G29402T","S:P681R,N:D377Y,N:P67S,ORF8:T26I,S:T19R,S:F157-,S:E156G,S:R158-","S:E484Q,S:L452R",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.617,0.0,0.0,0.0,0.0
B.1.618,B.1.618,"nsp3:S697F,RdRp:D268N,S:E484K,ORF3a:T151I,N:A119S,N:A217S,N:M234I","C4809T,G14245A,G23012A,C25844T,G28628T,G28922T,G28975T","N:A217S,N:E367Q,N:M234I,N:G18S,N:A119S,S:Y145-,S:H146-",S:E484K,,,,,,
B.1.619,B.1.619,"nsp3:A1305V,nsp3:E1789K,S:S939F,ORF7a:E22D,N:P13L,N:T205I","C6633T,G8084A,C24378T,G27459T,C28311T,C28887T","S:I210T,S:T1027I,S:D936N,N:P13L,S:S939F","S:E484K,S:N440K",,,,,,
B.1.620,B.1.620,"nsp2:T223I,nsp3:V1173I,S:P26S,S:S477N,S:E484K,S:T1027I","C1473T,G6236A,C21638T,G22992A,G23012A,C24642T","S:A243-,S:V126A,S:T1027I,S:L242-,S:P26S,S:P681H,S:D1118H,N:A220V,S:L244-,S:Y144-","S:E484K,S:S477N",,,,,,
B.1.621,Mu:B.1.621,"S:T95I,S:N501Y,S:P681H,ORF3a:Q57H,ORF8:S67F","C21846T,A23063T,C23604A,G25563T,C28093T","S:P681H,S:D950N,S:T95I,ORF8:S67F,ORF3a:P258*,ORF3a:M260-,ORF3a:E261-,ORF3a:D265-,ORF3a:P262-,ORF3a:N257Q,ORF3a:Y264-,ORF3a:V256I,ORF3a:V259-,ORF3a:I263-,S:V143V,S:Y145N,S:Y144S","S:E484K,S:N501Y,S:R346K",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=B.1.621,30.25,66.12,122.28,190.05
B.1.621.1,Mu:B.1.621.1,"nsp4:T189I,S:T95I,S:N501Y,S:P681H,ORF3a:V259L,ORF8:S67F","C9120T,C21846T,A23063T,C23604A,G26167T,C28093T","S:P681H,S:D950N,S:T95I,ORF3a:Y264-,ORF8:S67F,ORF3a:V256I,ORF3a:I263-,ORF3a:M260-,ORF3a:E261-,ORF3a:V259-,ORF3a:P262-,ORF3a:N257Q,ORF3a:P258*,ORF3a:V259L,ORF3a:D265-,S:V143V,S:Y145N,S:Y144S","S:E484K,S:N501Y,S:R346K",VBM,,57.31,100.06,213.94,622.15
B.1.621.2,"Mu:B.1.621.2,BB.1","S:T95I,S:Y449N,S:N501Y,S:P681H,ORF3a:Q57H,M:R146H,ORF8:S67F","C21846T,T22907A,A23063T,C23604A,G25563T,G26959A,C28093T","S:P681H,S:D950N,S:T95I,ORF3a:Y264-,ORF8:S67F,ORF3a:M260-,ORF3a:I263-,ORF3a:N257Q,ORF3a:V259-,ORF3a:D265-,ORF3a:V256I,ORF3a:E261-,ORF3a:P262-,ORF3a:P258*,S:E583D,S:V143V,S:Y145N,S:Y144S","S:E484K,S:N501Y,S:R346K,S:Y449N",VBM,,0.0,0.0,0.0,0.0
B.1.630,B.1.630,"nsp2:T85I,nsp3:K977Q,nsp4:A446V,S:A222V,S:L452R,S:H655Y,S:D950N","C1059T,A5648C,C9891T,C22227T,T22917G,C23525T,G24410A","S:A243-,N:P80R,S:H655Y,S:C136F,S:A222V,S:D950N,N:S412N,nsp3:R748S,ORF3a:P36-,S:L244-,S:Y144-","S:T478R,S:E484Q,S:L452R",,,,,,
B.1.640,B.1.X,"S:P9L,S:E96Q,N:D22Y","C21588T,G21848C,G28337T","N:E378Q,S:P681H,N:D22Y,S:T859N,ORF3a:T32I,S:E96Q,S:N394S","S:N501Y,S:R346S,S:F490R,S:Y449N",,,,,,
B.1.640.1,IHU,"nsp4:S386F,S:P9L,S:E96Q,S:I210T,ORF8:Q27*,N:D22Y","C9711T,C21588T,G21848C,T22191C,C27972T,G28337T","S:R190S,S:I210T,S:D936H,S:P681H,N:E378Q,N:D22Y,S:T859N,ORF3a:T32I,ORF8:Q27*,S:E96Q,S:N394S","S:N501Y,S:R346S,S:F490C,S:F490L,S:Y449N",,,,,,
B.1.640.2,IHU,"S:P9L,S:E96Q,N:P13P,N:D22Y","C21588T,G21848C,C28312T,G28337T","nsp13:V371A,S:D1139H,S:P681H,S:T859N,ORF3a:T32I,N:P13P,N:D22Y,ORF8:Q27*,S:E96Q,S:N394S","S:E484K,S:F490S,S:N501Y,S:R346S,S:Y449N",,,,,,
B.2,B.2,"nsp6:L37F,ORF3a:G251V","G11083T,G26144T",ORF3a:G251V,,,,,,,
BA.1,"Omicron,21K,B.1.1.529.1","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K","G8393A,C10029T,A11537G,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:L981F,S:N856K,S:H655Y,S:N764K,E:T9I,N:P13L,S:T547K,S:Q954H,S:N679K,S:N969K,S:T95I,M:Q19E,M:D3G,N:G30G,N:E31-,N:R32-,N:S33-,S:V70-,S:G142D,S:H69-,S:N211I,S:L212-,S:V143-,S:Y145-,S:Y144-","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371L,S:G446S,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,4.02,7.18,4.08,7.35
BA.1.1,"Omicron,B.1.1.529.1.1","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:R346K,S:T547K","G8393A,C10029T,A11537G,G22599A,C23202A","S:P681H,S:G142D",,VOC,,4.6,8.27,3.82,6.85
BA.1.1.1,"Omicron,B.1.1.529.1.1.1","nsp3:A1892T,nsp4:T492I,nsp6:I189V,RdRp:Q875R,S:R346K,S:T547K","G8393A,C10029T,A11537G,A16064G,G22599A,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:N969K,M:D3G,S:N856K,S:T95I,S:T547K,E:T9I,S:P681H,S:N764K,S:Q954H,S:N679K,S:L981F,M:Q19E,N:P13L,S:H655Y,S:G142D","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:R346K,S:E484A,S:Q498R,S:G496S,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,19.57,36.24,24.09,32.04
BA.1.1.10,"Omicron,B.1.1.529.1.1.10","nsp2:A555A,nsp3:A1892T,nsp4:T492I,nsp6:I189V,nsp8:T141M,S:R346K,S:N440K,S:T547K","C2470T,G8393A,C10029T,A11537G,C12513T,G22599A,T22882G,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:T547K,S:N764K,E:T9I,S:N679K,S:T95I,S:N969K,S:L981F,N:D343G,S:N856K,M:Q19E,M:D3G,N:P13L,S:H655Y,S:Q954H,S:G142D","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:S371P,S:G339D,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,20.54,28.13,22.08,61.65
BA.1.1.11,"Omicron,B.1.1.529.1.1.11","nsp2:G517R,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:R346K,S:T547K","G2354A,G8393A,C10029T,A11537G,G22599A,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:N856K,S:N764K,E:T9I,S:P681H,S:T547K,S:Q954H,S:T95I,S:N679K,S:N969K,S:L981F,N:P13L,M:Q19E,S:G142D","S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:R346K,S:E484A,S:Q498R,S:G496S,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,23.75,65.38
BA.1.1.12,"Omicron,B.1.1.529.1.1.12","nsp2:A555A,nsp3:L75M,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:R346K,S:T547K","C2470T,C2942A,G8393A,C10029T,A11537G,G22599A,C23202A","3CLpro:P132H,S:A67V,S:L981F,M:D3G,S:T547K,S:N856K,S:H655Y,E:T9I,N:P13L,S:D796Y,S:Q954H,S:T95I,S:N679K,S:N969K,N:D343G,M:Q19E,S:N764K","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,45.93,74.26
BA.1.1.13,"Omicron,B.1.1.529.1.1.13","nsp2:A555A,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:R346K,S:T547K,ORF3a:T229I","C2470T,G8393A,C10029T,A11537G,G22599A,C23202A,C26078T","3CLpro:P132H,S:A67V,S:D796Y,S:N856K,S:T95I,S:T547K,E:T9I,S:N764K,N:P13L,S:Q954H,S:N679K,S:N969K,S:L981F,N:D343G,M:Q19E,M:D3G,S:H655Y","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,83.1,117.2
BA.1.1.14,"Omicron,B.1.1.529.1.1.14","nsp2:A555A,nsp3:A1892T,nsp4:T492I,nsp6:I189V,RdRp:I222V,S:R346K,S:T547K","C2470T,G8393A,C10029T,A11537G,A14107G,G22599A,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:T547K,S:L981F,E:T9I,S:N679K,S:T95I,S:P681H,S:N969K,M:D3G,S:N856K,N:D343G,N:P13L,M:Q19E,S:Q954H,S:N764K,S:G142D","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,37.51,41.85,31.37,38.19
BA.1.1.15,"Omicron,B.1.1.529.1.1.15","nsp2:A555A,nsp3:A1892T,nsp4:T492I,nsp6:I189V,RdRp:G43S,RdRp:T226M,S:R346K,S:T547K","C2470T,G8393A,C10029T,A11537G,G13570A,C14117T,G22599A,C23202A","3CLpro:P132H,S:A67V,S:D796Y,M:Q19E,S:T547K,S:N856K,S:N764K,E:T9I,S:T95I,S:N679K,S:N969K,S:L981F,N:D343G,M:D3G,N:P13L,S:H655Y,S:Q954H,S:N211I","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,7.69,15.52
BA.1.1.16,"Omicron,B.1.1.529.1.1.16","nsp2:A555A,nsp4:T492I,3CLpro:P132H,S:V11V,S:R346K,S:H655Y,E:T9I,ORF7a:T39R","C2470T,C10029T,C10449A,C21595T,G22599A,C23525T,C26270T,C27509G","3CLpro:P132H,3CLpro:L27L,S:A67V,S:D796Y,S:N969K,M:D3G,M:Q19E,S:T547K,S:N856K,S:N764K,E:T9I,S:N679K,S:Q954H,S:T95I,S:P681H,S:L981F,S:A701V,N:D343G,N:P13L,S:H655Y,S:G142D","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,31.55,38.03,0.0,0.0
BA.1.1.17,"Omicron, B.1.1.529.1.1.17","nsp2:G285V,nsp3:P822S,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:R346K,S:T547K","G1659T,C5183T,G8393A,C10029T,A11537G,G22599A,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:N969K,M:D3G,S:N856K,S:H655Y,S:T95I,S:T547K,S:L981F,E:T9I,S:N679K,S:P681H,M:Q19E,N:P13L,S:Q954H,S:N764K,S:G142D","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:S371P,S:T478K,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,49.09,82.93,0.0,0.0
BA.1.1.18,"Omicron,21K,B.1.1.529.1.1.18","nsp2:A555A,nsp3:A1736V,nsp4:T492I,3CLpro:P132H,RdRp:F694Y,S:R346K,S:H655Y,E:T9I","C2470T,C7926T,C10029T,C10449A,T15521A,G22599A,C23525T,C26270T","3CLpro:L27L,3CLpro:P132H,S:A67V,S:N969K,M:Q19E,S:T547K,S:N856K,S:N764K,S:L981F,E:T9I,S:N679K,S:P681H,S:D796Y,S:T95I,S:A701V,M:D3G,N:D343G,N:P13L,S:H655Y,S:Q954H","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,69.33,107.11,0.0,0.0
BA.1.1.2,"Omicron,B.1.1.529.1.1.2","nsp2:A555A,nsp3:A1892T,nsp4:T492I,3CLpro:T169S,nsp6:I189V,S:R346K,S:K417N,S:N440K,S:T547K","C2470T,G8393A,C10029T,C10560G,A11537G,G22599A,G22813T,T22882G,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:N969K,M:D3G,M:Q19E,S:N764K,S:T95I,S:L981F,E:T9I,N:P13L,S:N679K,S:P681H,N:D343G,S:N856K,S:T547K,S:Q954H,S:G142D","S:K417N,S:S477N,S:N501Y,S:S371P,S:G339D,S:T478K,S:S371F,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,51.02,81.38,4.92,8.79
BA.1.1.3,"Omicron,B.1.1.529.1.1.3","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,S:T791I,N:N48S","G8393A,C10029T,A11537G,C23202A,C23934T,A28416G","3CLpro:P132H,S:A67V,S:D796Y,S:T791I,S:H655Y,M:D3G,M:Q19E,S:N856K,S:L981F,E:T9I,S:P681H,N:N48S,S:T547K,S:T95I,S:N679K,S:N969K,N:P13L,S:Q954H,S:N764K,S:G142D","S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:E484A,S:Q498R,S:G496S,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,26.58,81.12
BA.1.1.4,"Omicron,B.1.1.529.1.1.4","nsp3:A1892T,nsp4:T492I,nsp6:I189V,nsp13:G170S,S:R346K,S:K417N,S:N440K,S:T547K,ORF3a:Y107H","G8393A,C10029T,A11537G,G16744A,G22599A,G22813T,T22882G,C23202A,T25711C","3CLpro:P132H,S:A67V,S:D796Y,S:N969K,E:T9I,S:N679K,S:N764K,S:T547K,N:P13L,S:Q954H,S:T95I,S:L981F,M:D3G,M:Q19E,S:N856K,N:D343G,S:H655Y,S:G142D","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.1.1.5,"Omicron,B.1.1.529.1.1.5","nsp2:E595G,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:R346K,S:N440K,S:T547K","A2589G,G8393A,C10029T,A11537G,G22599A,T22882G,C23202A","3CLpro:P132H,S:A67V,M:Q19E,S:N856K,S:H655Y,S:T95I,S:L981F,E:T9I,S:N679K,S:N764K,S:D796Y,S:T547K,S:P681H,S:N969K,N:P13L,S:Q954H,S:N211I","S:S477N,S:N501Y,S:G339D,S:S371F,S:S371P,S:T478K,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.1.1.6,"Omicron,B.1.1.529.1.1.6","nsp2:G517R,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:R346K,S:T547K,N:P162S","G2354A,G8393A,C10029T,A11537G,G22599A,C23202A,C28757T","3CLpro:P132H,S:A67V,N:P162S,S:N969K,M:Q19E,S:H655Y,S:T95I,E:T9I,S:N679K,S:N764K,S:D796Y,S:T547K,S:Q954H,S:P681H,S:L981F,M:D3G,S:N856K,N:P13L,S:G142D","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,75.2,106.87
BA.1.1.7,"Omicron,B.1.1.529.1.1.7","nsp2:L550F,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:R346K,S:T547K","C2453T,G8393A,C10029T,A11537G,G22599A,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,M:D3G,S:T547K,S:N856K,S:N764K,S:T95I,E:T9I,S:N679K,S:P681H,S:N969K,S:L981F,N:P13L,M:Q19E,S:Q954H,S:G142D","S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.1.1.8,"Omicron,B.1.1.529.1.1.8","nsp2:Q321K,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:K417N,S:N440K,S:T547K","C1766A,G8393A,C10029T,A11537G,G22813T,T22882G,C23202A","3CLpro:P132H,S:A67V,S:N969K,M:D3G,S:T547K,S:N856K,S:H655Y,E:T9I,S:P681H,S:D796Y,N:P13L,S:Q954H,S:N679K,S:L981F,M:Q19E,S:N764K,S:G142D,S:N211I","S:K417N,S:S477N,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:E484A,S:Q493R,S:S375F,S:N440K",VOC,,48.68,52.11,0.0,0.0
BA.1.1.9,"Omicron,B.1.1.529.1.1.9","nsp3:A1892T,nsp4:T492I,nsp6:I189V,GFL:L133F,S:R346K,S:T547K","G8393A,C10029T,A11537G,C13421T,G22599A,C23202A","3CLpro:P132H,S:A67V,S:N969K,M:D3G,S:T547K,S:N856K,S:T95I,S:L981F,E:T9I,S:P681H,S:N764K,S:D796Y,S:N679K,M:Q19E,N:P13L,S:H655Y,S:Q954H,S:G142D","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.1.10,"Omicron,B.1.1.529.1.10","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,M:D3G","G8393A,C10029T,A11537G,C23202A,A26530G","3CLpro:P132H,nsp13:Y269C,S:A67V,S:D796Y,S:N969K,M:D3G,M:Q19E,S:N856K,S:H655Y,S:T95I,S:L981F,E:T9I,S:N679K,N:P13L,S:P681H,S:T547K,S:Q954H,S:N764K,S:G142D,S:N211I","S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:S371P,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,4.73,8.54,4.03,7.26
BA.1.12,"Omicron,B.1.1.529.1.12","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:E309Q,S:T547K,M:D3G,N:R14R","G8393A,C10029T,A11537G,G22487C,C23202A,A26530G,C28315T","3CLpro:P132H,S:A67V,S:E309Q,S:N969K,S:T547K,S:N856K,E:T9I,S:P681H,S:D796Y,S:T95I,S:N679K,S:L981F,N:P13L,N:R14R,M:D3G,M:Q19E,S:H655Y,S:Q954H,S:N764K,S:G142D,S:N211I","S:S477N,S:N501Y,S:G339D,S:T478K,S:E484A,S:Q498R,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,56.92,57.84
BA.1.13,"Omicron,B.1.1.529.1.13","nsp2:K384N,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,M:D3G","G1957T,G8393A,C10029T,A11537G,C23202A,A26530G","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:N969K,S:T547K,S:N764K,E:T9I,S:Q954H,S:T95I,S:N679K,S:P681H,S:L981F,M:D3G,S:N856K,M:Q19E,N:P13L,S:G142D,S:N211I","S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,12.72,22.43
BA.1.13.1,"Omicron,B.1.1.529.1.13.1","nsp2:K384N,nsp3:A1892T,nsp4:T492I,nsp6:I189V,nsp15:V22L,S:T547K,M:D3G","G1957T,G8393A,C10029T,A11537G,G19684T,C23202A,A26530G","3CLpro:P132H,S:A67V,S:D796Y,S:N969K,M:D3G,M:Q19E,S:N856K,S:H655Y,S:N764K,E:T9I,S:N679K,S:T547K,N:P13L,S:Q954H,S:T95I,S:P681H,S:L981F,S:G142D,S:N211I","S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.1.14,"Omicron,21K,B.1.1.529.1.14,B.1.1.529.1.14.2","nsp3:A1892T,nsp4:T492I,nsp6:A46V,nsp6:I189V,nsp9:T34I,S:T547K,nsp2:A336V,nsp3:A1892T,nsp4:T492I,nsp6:I189V,nsp9:T34I,S:T547K","G8393A,C10029T,C11109T,A11537G,C12786T,C23202A,C1812T,G8393A,C10029T,A11537G,C12786T,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:N969K,S:L981F,M:Q19E,S:T547K,S:N856K,S:N764K,S:T95I,E:T9I,S:N679K,S:P681H,N:P13L,M:D3G,S:Q954H,S:G142D","S:S477N,S:N501Y,S:G339D,S:T478K,S:S371P,S:S371F,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,0.0,0.0
BA.1.14.1,"Omicron,21K,B.1.1.529.1.14.1","nsp3:A1892T,nsp4:T492I,nsp6:A46V,nsp6:I189V,nsp9:T34I,S:T547K","G8393A,C10029T,C11109T,A11537G,C12786T,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:N969K,M:Q19E,S:T95I,E:T9I,S:N764K,S:N679K,S:L981F,N:P13L,S:N856K,M:D3G,S:T547K,S:H655Y,S:Q954H","S:S477N,S:N501Y,S:T478K,S:G339D,S:E484A,S:Q498R,S:G496S,S:Q493R,S:Y505H",VOC,,0.0,0.0,0.0,0.0
BA.1.14.2,"Omicron,21K,B.1.1.529.1.14.1","nsp2:A336V,nsp3:A1892T,nsp4:T492I,nsp6:I189V,nsp9:T34I,S:T547K","C1812T,G8393A,C10029T,A11537G,C12786T,C23202A","3CLpro:P132H,S:A67V,S:N969K,M:Q19E,S:N856K,S:H655Y,S:L981F,E:T9I,S:N679K,S:P681H,S:N764K,S:D796Y,N:P13L,S:T547K,S:T95I,M:D3G,S:Q954H,S:G142D","S:S477N,S:T478K,S:S371F,S:S371P,S:G339D,S:E484A,S:S373P,S:Q493R,S:S375F",VOC,,0.0,0.0,0.0,0.0
BA.1.15,"Omicron,B.1.1.529.1.15","nsp3:A1892T,3CLpro:L27L,nsp6:I189V,S:T547K,ORF3a:L106F,E:T9I,N:D343G","G8393A,T10135C,A11537G,C23202A,C25708T,C26270T,A29301G","3CLpro:L27L,3CLpro:P132H,S:A67V,S:D796Y,S:N969K,M:D3G,M:Q19E,S:H655Y,E:T9I,S:N764K,S:T547K,N:P13L,S:Q954H,S:T95I,S:N679K,S:P681H,S:L981F,N:D343G,S:N856K,S:G142D,S:N211I","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.15,9.28,4.32,7.76
BA.1.15.1,"Omicron,B.1.1.529.1.15.1","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:N440K,S:G446S,S:T547K,S:I1081V,ORF3a:L106F,E:T9I,N:D343G","G8393A,C10029T,A11537G,T22882G,G22898A,C23202A,A24803G,C25708T,C26270T,A29301G","3CLpro:L27L,3CLpro:P132H,S:A67V,S:D796Y,M:Q19E,S:N856K,S:N764K,S:T95I,S:I1081V,E:T9I,N:P13L,S:Q954H,S:N679K,S:P681H,S:N969K,S:L981F,N:D343G,S:T547K,M:D3G,S:H655Y,S:G142D,S:N211I","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,144.89,79.63,115.63,67.79
BA.1.15.2,"Omicron,B.1.1.529.1.15.2","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:V320I,S:N440K,S:G446S,S:T547K,S:Q628K,ORF3a:L106F,E:T9I,N:D343G","G8393A,C10029T,A11537G,G22520A,T22882G,G22898A,C23202A,C23444A,C25708T,C26270T,A29301G","3CLpro:L27L,3CLpro:P132H,S:A67V,S:D796Y,S:Q628K,S:V320I,S:N969K,M:D3G,M:Q19E,S:T95I,S:T547K,S:L981F,E:T9I,S:N679K,S:N764K,N:P13L,S:Q954H,S:P681H,N:D343G,S:N856K,S:H655Y,S:G142D,S:N211I","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,21.9,38.3,0.0,0.0
BA.1.15.3,"Omicron,B.1.1.529.1.15.3","nsp3:H295Y,nsp3:A1892T,nsp6:I189V,S:T547K,ORF3a:L106F,ORF3a:S165F,E:T9I,N:D343G","C3602T,G8393A,A11537G,C23202A,C25708T,C25886T,C26270T,A29301G","3CLpro:L27L,3CLpro:P132H,S:A67V,M:D3G,S:N856K,S:H655Y,S:N764K,S:T95I,S:L981F,E:T9I,S:N679K,S:D796Y,N:P13L,N:S33-,S:T547K,S:P681H,S:N969K,N:D343G,N:R32-,N:G30G,M:Q19E,N:E31-,S:Q954H,S:V70-,S:G142D,S:H69-,S:N211I,S:L212-,S:V143-,S:Y145-,S:Y144-","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.1.16,"Omicron,B.1.1.529.1.16","nsp3:Y129H,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,ORF10:N25N","T3104C,G8393A,C10029T,A11537G,C23202A,C29632T","3CLpro:P132H,S:A67V,M:D3G,M:Q19E,S:T547K,S:N856K,E:T9I,S:P681H,S:D796Y,S:T95I,S:N679K,S:N969K,S:L981F,S:H655Y,S:Q954H,S:G142D,S:N211I","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371P,S:S371F,S:G446S,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,11.02,10.85
BA.1.16.1,"Omicron,B.1.1.529.1.16.1","nsp3:Y129H,nsp3:A1892T,nsp4:V402I,nsp4:T492I,nsp6:I189V,S:T547K,S:N764K,ORF3a:V55G,ORF10:N25N","T3104C,G8393A,G9758A,C10029T,A11537G,C23202A,C23854A,T25556G,C29632T","3CLpro:P132H,S:A67V,S:D796Y,S:N969K,M:D3G,S:N856K,S:T547K,S:L981F,S:N764K,E:T9I,S:N679K,S:P681H,M:Q19E,S:Q954H,S:T95I,S:H655Y,S:G142D,S:N211I","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.1.16.2,"Omicron,B.1.1.529.1.16.2","nsp3:Y129H,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,S:N764K,ORF8:I121V,ORF10:N25N","T3104C,G8393A,C10029T,A11537G,C23202A,C23854A,A28254G,C29632T","3CLpro:P132H,S:A67V,S:D796Y,M:D3G,S:T547K,S:N856K,S:N764K,S:L981F,E:T9I,S:N679K,S:P681H,M:Q19E,S:T95I,S:N969K,S:H655Y,S:Q954H,S:G142D,S:N211I","S:K417N,S:S477N,S:N501Y,S:S371P,S:G339D,S:T478K,S:S371F,S:G446S,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.1.17,"Omicron,B.1.1.529.1.17","nsp3:V1069I,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K","G5924A,G8393A,C10029T,A11537G,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,M:D3G,M:Q19E,S:N764K,S:T95I,E:T9I,S:Q954H,S:N679K,S:P681H,S:N969K,S:L981F,S:N856K,S:T547K,S:G142D,S:N211I","S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,5.16,9.34,4.28,7.75
BA.1.17.2,"Omicron,B.1.1.529.1.17.2","nsp3:V1069I,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,S:A701V","G5924A,G8393A,C10029T,A11537G,C23202A,C23664T","3CLpro:P132H,S:A67V,S:D796Y,S:N969K,M:D3G,M:Q19E,E:T9I,S:N764K,S:T547K,S:Q954H,S:T95I,S:N679K,S:P681H,S:L981F,S:A701V,N:P13L,S:N856K,S:H655Y,S:G142D,S:N211I","S:S477N,S:N501Y,S:S371P,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,5.3,9.74,4.31,7.79
BA.1.18,"Omicron,B.1.1.529.1.18","nsp3:T1004I,nsp4:T492I,3CLpro:P132H,S:H655Y,E:T9I","C5730T,C10029T,C10449A,C23525T,C26270T","3CLpro:L27L,3CLpro:P132H,S:A67V,M:D3G,S:T547K,S:H655Y,S:N764K,S:T95I,S:L981F,E:T9I,S:N679K,S:D796Y,N:P67S,S:P681H,S:N969K,N:P13L,N:D343G,M:Q19E,S:N856K,S:Q954H","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371P,S:S371F,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.57,10.15,3.98,7.18
BA.1.19,"Omicron,B.1.1.529.1.19","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K","G8393A,C10029T,A11537G,C23202A","3CLpro:P132H,S:A67V,S:D796Y,M:D3G,S:N856K,S:H655Y,S:N764K,S:T95I,E:T9I,S:N679K,S:P681H,S:T547K,S:Q954H,S:N969K,S:L981F,M:Q19E,S:G142D,S:N211I","S:N501Y,S:G339D,S:T478K,S:E484A,S:Q498R,S:G496S,S:Q493R,S:Y505H",VOC,,73.01,60.68,7.74,15.45
BA.1.20,"Omicron,B.1.1.529.1.20","nsp3:A1892T,nsp4:T492I,nsp6:I189V,nsp7:H36H,S:T547K,N:P67S","G8393A,C10029T,A11537G,C11950T,C23202A,C28472T","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:N969K,M:Q19E,S:N764K,S:T95I,S:L981F,E:T9I,N:P13L,S:Q954H,N:P67S,S:N679K,S:N856K,M:D3G,S:T547K","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.57,9.95,54.19,53.26
BA.1.22,"Omicron,21K,B.1.1.529.1.22","nsp2:A555A,nsp3:E155K,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K","C2470T,G3182A,G8393A,C10029T,A11537G,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:N969K,S:T95I,E:T9I,S:T547K,N:P13L,S:Q954H,S:N679K,S:L981F,S:N856K,M:D3G,M:Q19E,S:N764K","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.1.23,"Omicron,21K,B.1.1.529.1.23","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:R346T,S:K458M,S:E484V,S:T547K","G8393A,C10029T,A11537G,G22599C,A22935T,A23013T,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:N969K,M:D3G,M:Q19E,S:H655Y,S:N764K,E:T9I,S:N679K,S:T547K,nsp3:I1094I,S:T95I,S:L981F,S:N856K,N:P13L,S:Q954H,S:E96D","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:R346T,S:E484A,S:E484V,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:L455W,S:N440K,S:K458M",VOC,,0.0,0.0,0.0,0.0
BA.1.3,"Omicron,B.1.1.529.1.3","nsp3:A254A,nsp3:A1892T,nsp4:H31Y,nsp4:T492I,nsp6:I189V,S:K417N,S:T547K,N:R203K,N:G204R","A3481G,G8393A,C8645T,C10029T,A11537G,G22813T,C23202A,G28881A,G28883C","3CLpro:P132H,S:A67V,S:N969K,S:L981F,M:Q19E,S:N764K,S:T95I,E:T9I,S:N679K,S:D796Y,S:T547K,S:Q954H,N:P13L,S:N856K,M:D3G,S:H655Y","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:S371P,S:T478K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,0.0,0.0
BA.1.4,"Omicron,B.1.1.529.1.4","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,S:V597I","G8393A,C10029T,A11537G,C23202A,G23351A","3CLpro:P132H,S:A67V,S:D796Y,S:V597I,S:Q1201K,S:N969K,M:D3G,S:N764K,S:T95I,E:T9I,S:N679K,S:P681H,S:T547K,S:Q954H,S:L981F,S:H655Y,N:I337I,N:P13L,S:N856K,M:Q19E,S:G142D,S:N211I","S:S477N,S:N501Y,S:S371F,S:S371P,S:G339D,S:T478K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,0.0,0.0
BA.1.5,"Omicron,B.1.1.529.1.5","nsp2:T429I,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,S:A831V","C2091T,G8393A,C10029T,A11537G,C23202A,C24054T","3CLpro:P132H,S:A67V,S:N969K,S:T547K,S:H655Y,S:N764K,S:T95I,E:T9I,S:N679K,S:D796Y,N:P13L,S:Q954H,S:L981F,S:A831V,S:N856K,M:Q19E,M:D3G","S:S477N,S:N501Y,S:T478K,S:G339D,S:S371P,S:S371F,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,0.0,0.0
BA.1.8,"Omicron,B.1.1.529.1.8","nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,S:P809S,ORF10:L37F","G8393A,C10029T,A11537G,C23202A,C23987T,C29666T","3CLpro:P132H,S:A67V,S:D796Y,M:D3G,M:Q19E,S:N856K,S:N764K,S:L981F,E:T9I,S:P809S,S:T547K,S:Q954H,S:T95I,S:N679K,S:N969K,N:P13L,S:H655Y","S:S477N,S:N501Y,S:T478K,S:G339D,S:S371P,S:S371F,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,78.55,112.17
BA.1.9,"Omicron,B.1.1.529.1.9","nsp3:A1892T,nsp4:T492I,nsp6:I189V,nsp7:V58I,nsp15:Q196H,S:T547K","G8393A,C10029T,A11537G,G12014A,G20208T,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:L981F,S:N856K,E:T9I,S:T547K,S:Q954H,S:T95I,S:N679K,S:N969K,N:P13L,S:H655Y","S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:S371P,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,25.17,68.58
BA.2,"Omicron, B.1.1.529.2,21L","nsp1:S135R,nsp13:R392C,S:V213G","T670G,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:L24S,S:P25-,M:Q19E,E:T9I,S:P681H,S:P26-,N:P13L,S:N679K,S:N969K,N:S413R,N:E31-,N:G30G,N:S33-,S:H655Y,N:R32-,S:Q954H,S:N764K,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,2.11,3.59,3.24,5.87
BA.2.1,"Omicron,B.1.1.529.2.1","nsp1:S135R,nsp9:T35I,nsp13:R392C,S:V213G","T670G,C12789T,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N764K,E:T9I,S:N679K,M:Q19E,N:P13L,S:Q954H,S:N969K,N:S413R,S:G142D,S:T19I,S:V213G","S:K417N,S:S477N,S:T478K,S:G339D,S:S371F,S:E484A,S:S373P,S:S375F,S:N440K",VOC,,7.17,11.59,9.68,19.94
BA.2.10,"Omicron,B.1.1.529.2.10","nsp1:S135R,nsp13:S36P,nsp13:R392C,S:V213G","T670G,T16342C,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:H655Y,S:D796Y,S:N764K,S:N679K,S:Q954H,S:N969K,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,2.95,5.12,11.75,25.61
BA.2.10.1,"Omicron,B.1.1.529.2.10.1","nsp1:S135R,nsp13:S36P,nsp13:R392C,nsp15:T112I,S:V213G,S:N440K,S:G798D","T670G,T16342C,C17410T,C19955T,T22200G,T22882G,G23955A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:G798D,S:H655Y,S:N969K,S:N764K,S:N679K,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,9.44,16.01,11.23,24.39
BA.2.10.2,"Omicron,B.1.1.529.2.10.2","nsp1:S135R,nsp13:S36P,nsp13:R392C,S:V213G,E:R61L","T670G,T16342C,C17410T,T22200G,G26426T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,S:N679K,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,0.0,0.0
BA.2.10.3,"Omicron,B.1.1.529.2.10.3","nsp1:S135R,nsp13:S36P,nsp13:R392C,S:I68T,S:V213G","T670G,T16342C,C17410T,T21765C,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,S:N764K,S:Q954H,S:N679K,S:G142D,S:I68T,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,0.0,0.0
BA.2.11,"Omicron,B.1.1.529.2.11","nsp1:S135R,nsp3:S1701P,nsp13:R392C,S:V213G,S:L452R","T670G,T7820C,C17410T,T22200G,T22917G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,E:T9I,S:N764K,N:P13L,S:N679K,N:S413R,M:Q19E,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.12,"Omicron,21L,B.1.1.529.2.44","nsp1:S135R,nsp13:R392C,S:V213G,S:S704L,ORF3a:F8F","T670G,C17410T,T22200G,C23673T,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:N969K,M:Q19E,S:H655Y,E:T9I,S:N764K,S:D796Y,S:Q954H,S:S704L,S:N679K,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,2.09,3.41,5.46,5.43
BA.2.12.1,"Omicron, B.1.1.529.2.12.1,BG","nsp1:S135R,nsp13:R392C,S:V213G,S:L452Q,S:S704L,ORF3a:F8F","T670G,C17410T,T22200G,T22917A,C23673T,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,N:S413R,S:S704L,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452Q,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,2.07,3.36,4.47,8.56
BA.2.12.2,BA.2.12.2,"nsp1:S135R,nsp13:R392C,S:V213G,S:R357K,S:S704L,ORF3a:F8F,ORF7a:Q62R","T670G,C17410T,T22200G,G22632A,C23673T,C25416T,A27578G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,S:H655Y,S:N764K,E:T9I,S:Q954H,S:S704L,S:N679K,S:N969K,N:S413R,N:P13L,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:R357K,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.13,"Omicron, B.1.1.529.2.13","nsp1:S135R,nsp13:R392C,S:V213G,S:I410I,S:L452M,S:S735S","T670G,C17410T,T22200G,C22792T,C22916A,A23767G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:S735S,M:Q19E,E:T9I,S:N764K,N:P13L,S:N679K,S:N969K,N:S413R,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452M,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,6.06,5.11,7.62,13.29
BA.2.13.1,"Omicron, B.1.1.529.2.13.1","nsp1:S135R,nsp13:R392C,S:V213G,S:I410I,S:L452M,S:S735S,S:T941S","T670G,C17410T,T22200G,C22792T,C22916A,A23767G,A24383T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:N969K,S:T941S,S:H655Y,S:S735S,S:N764K,E:T9I,S:N679K,M:Q19E,S:Q954H,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452M,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.65,7.29,0.0,0.0
BA.2.14,"Omicron, B.1.1.529.2.14","nsp1:S135R,nsp13:R392C,S:W64L,S:V213G,S:I410I","T670G,C17410T,G21753T,T22200G,C22792T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,E:T9I,S:N764K,S:N679K,S:N969K,N:P13L,N:S413R,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:W64L,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,9.86,17.26
BA.2.15,"Omicron, B.1.1.529.2.15","nsp1:S135R,nsp4:T387I,nsp13:R392C,S:W64L,S:V213G","T670G,C9714T,C17410T,G21753T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N764K,E:T9I,S:N679K,S:N969K,M:Q19E,N:P13L,N:S413R,S:Q954H,S:G142D,S:W64L,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.17,"Omicron,B.1.1.529.2.17","nsp1:S135R,nsp13:R392C,S:V213G,ORF3a:D173Y","T670G,C17410T,T22200G,G25909T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,ORF3a:D173Y,N:P13L,N:S413R,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.18,"Omicron,B.1.1.529.2.18","nsp1:S135R,nsp13:R392C,S:V213G,S:K417T,S:F562F","T670G,C17410T,T22200G,A22812C,C23248T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:H655Y,S:D796Y,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,N:S413R,S:G142D,S:T19I,S:F562F,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:K417T,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.99,5.48,4.64,8.74
BA.2.19,"Omicron,B.1.1.529.2.19","nsp1:S135R,nsp2:T153M,RdRp:Y884Y,nsp13:R392C,S:V213G","T670G,C1263T,C16092T,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N764K,E:T9I,S:N679K,S:N969K,N:P13L,N:S413R,M:Q19E,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,20.11,33.42
BA.2.2,"Omicron,B.1.1.529.2.2","nsp1:S135R,nsp3:T725I,nsp8:T145I,nsp13:R392C,S:V213G,S:I1221T","T670G,C4893T,C12525T,C17410T,T22200G,T25224C","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:H655Y,S:N764K,S:I1221T,S:N679K,S:D796Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,64.5,61.05
BA.2.2.1,"Omicron,B.1.1.529.2.2.1","nsp1:S135R,nsp3:T725I,nsp3:P1558P,nsp8:T145I,nsp13:R392C,S:V213G,S:I1221T,M:G89G,ORF8:I76V,N:A208A","T670G,C4893T,G7393T,C12525T,C17410T,T22200G,T25224C,C26789T,A28119G,T28897A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:I1221T,S:N764K,N:A208A,S:H655Y,S:N679K,ORF8:I76V,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.20,"Omicron,B.1.1.529.2.20","nsp1:S135R,nsp13:R392C,S:N148T,S:V213G,N:D348H","T670G,C17410T,A22005C,T22200G,G29315C","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,E:T9I,S:N679K,S:N764K,N:P13L,S:N969K,N:D348H,N:S413R,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:N148T,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.04,9.76,0.0,0.0
BA.2.21,"Omicron,B.1.1.529.2.21","nsp1:S135R,nsp3:G255R,nsp4:D70G,nsp8:E23E,nsp13:R392C,S:V213G,ORF3a:F8F","T670G,G3482A,A8763G,G12160A,C17410T,T22200G,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:H655Y,M:Q19E,E:T9I,S:N764K,S:D796Y,S:Q954H,S:N679K,S:N969K,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,16.34,21.76,0.0,0.0
BA.2.22,"Omicron,B.1.1.529.2.22","nsp1:S135R,nsp8:Q24H,nsp13:R392C,nsp13:I480I,S:V213G,S:I410I","T670G,G12163T,C17410T,C17676T,T22200G,C22792T","3CLpro:P132H,nsp13:R392C,nsp13:I480I,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,N:P13L,S:N679K,N:S413R,M:Q19E,S:Q954H,S:G142D,S:F186S,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,9.64,13.39,11.17,23.95
BA.2.23,"Omicron,B.1.1.529.2.23","nsp2:D511D,nsp13:R392C,S:V213G","C2338T,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:H655Y,S:D796Y,S:N969K,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.05,10.21,9.39,15.38
BA.2.23.1,"Omicron,B.1.1.529.2.23.1","nsp2:D511D,nsp3:S1717L,nsp13:R392C,S:V213G,N:Q39L","C2338T,C7869T,C17410T,T22200G,A28389T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,N:Q39L,N:P13L,S:Q954H,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,,,,
BA.2.24,"Omicron,B.1.1.529.2.24,20L","nsp1:S135R,nsp3:H1698H,nsp13:R392C,S:V213G,S:G339S","T670G,T7813C,C17410T,T22200G,G22577A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,M:Q19E,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,S:Q954H,S:N969K,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:G339S,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.25,"Omicron, B.1.1.529.2.25,21L","nsp1:S135R,nsp2:I283V,nsp13:R392C,S:V213G,S:I410I","T670G,A1652G,C17410T,T22200G,C22792T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,N:P13L,N:S413R,M:Q19E,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,12.34,21.55
BA.2.25.1,"Omicron, B.1.1.529.2.25.1,21L","nsp1:S135R,nsp2:I283V,nsp13:R392C,S:V213G,S:N354N,S:I410I,ORF3a:V97I","T670G,A1652G,C17410T,T22200G,C22624T,C22792T,G25681A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:H655Y,E:T9I,S:Q954H,S:N679K,S:N969K,N:S413R,N:P13L,M:Q19E,S:N764K,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N354N,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.26,"Omicron,21L,B.1.1.529.2.26","nsp1:S135R,nsp2:L400F,nsp4:T62I,nsp13:R392C,S:V213G","T670G,C2003T,C8739T,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,M:Q19E,N:P13L,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,9.36,14.82,0.0,0.0
BA.2.27,"Omicron,21L,B.1.1.529.2.27","nsp1:S135R,nsp3:M265I,nsp13:R392C,S:V213G","T670G,G3514A,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,E:T9I,S:N764K,M:Q19E,N:P13L,S:N679K,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:G339D,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.28,"Omicron,21L,B.1.1.529.2.28","nsp1:S135R,nsp4:T269I,nsp13:R392C,ORF3a:D22G","T670G,C9360T,C17410T,A25457G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,N:P13L,N:S413R,ORF3a:D22G,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:S255F,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.29,"Omicron,21L,B.1.1.529.2.29","nsp1:S135R,nsp2:A403T,nsp13:R392C,S:V213G","T670G,G2012A,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,M:Q19E,S:N764K,E:T9I,S:D796Y,S:Q954H,S:N679K,S:N969K,N:S413R,N:P13L,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3,"Omicron,B.1.1.529.2.3","nsp1:S135R,nsp4:A146V,nsp13:R392C,S:V213G,ORF3a:L140F","T670G,C8991T,C17410T,T22200G,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N764K,E:T9I,S:N679K,M:Q19E,S:Q954H,S:N969K,N:P13L,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.64,11.1,5.95,15.26
BA.2.3.1,"Omicron,B.1.1.529.2.3.1,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:Q677E","T670G,C17410T,T22200G,C23591G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,E:T9I,S:Q677E,S:N679K,S:N764K,M:Q19E,N:P13L,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:T478K,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,5.19,9.61
BA.2.3.10,"Omicron,B.1.1.529.2.3.10,21L","nsp1:S135R,nsp4:A146V,nsp13:R392C,S:V213G,ORF3a:W128C,ORF3a:L140F","T670G,C8991T,C17410T,T22200G,G25776T,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,E:T9I,S:N679K,S:N764K,M:Q19E,N:P13L,N:S413R,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,12.96,32.85,0.0,0.0
BA.2.3.11,"Omicron,B.1.1.529.2.3.11,21L","nsp1:S135R,nsp4:A146V,GFL:T101I,nsp13:R392C,S:V213G,ORF3a:L140F","T670G,C8991T,C13326T,C17410T,T22200G,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:N969K,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,N:S413R,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,248.47,117.1
BA.2.3.12,"Omicron,B.1.1.529.2.3.12,21L","nsp1:S135R,nsp4:A146V,nsp8:T145I,nsp13:R392C,S:V213G,ORF3a:L140F","T670G,C8991T,C12525T,C17410T,T22200G,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:N764K,E:T9I,S:D796Y,S:Q954H,S:N679K,S:N969K,N:P13L,N:S413R,S:H655Y,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3.13,"Omicron,B.1.1.529.2.3.13,21L","nsp1:S135R,nsp4:A146V,3CLpro:L75F,nsp13:R392C,S:V213G,ORF3a:L140F","T670G,C8991T,C10277T,C17410T,T22200G,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,3CLpro:L75F,RdRp:L758L,S:N969K,M:Q19E,E:T9I,S:N764K,S:D796Y,S:Q954H,S:N679K,N:S413R,N:P13L,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3.14,"Omicron,B.1.1.529.2.3.14,21L","nsp1:S135R,nsp4:A146V,nsp4:D459A,nsp13:R392C,S:V213G,ORF3a:L140F","T670G,C8991T,A9930C,C17410T,T22200G,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,M:Q19E,S:H655Y,S:S735S,E:T9I,N:P13L,S:N679K,S:N969K,N:S413R,S:Q954H,S:N764K,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452M,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3.15,"Omicron,B.1.1.529.2.3.15,21L","nsp1:S135R,nsp4:A146V,nsp13:R392C,S:V213G,S:D215E,ORF3a:L140F","T670G,C8991T,C17410T,T22200G,T22207G,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:N764K,E:T9I,S:N679K,N:P13L,M:Q19E,N:S413R,S:H655Y,S:Q954H,S:D215E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,13.63,21.59
BA.2.3.16,"Omicron,B.1.1.529.2.3.16","nsp1:S135R,nsp4:A146V,nsp13:R392C,S:V213G,ORF3a:L140F,ORF8:A65V","T670G,C8991T,C17410T,T22200G,C25810T,C28087T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,E:T9I,S:N764K,N:P13L,S:Q954H,S:N679K,S:N969K,N:S413R,ORF8:A65V,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3.17,"Omicron,B.1.1.529.2.3.17","nsp1:S135R,nsp2:K618N,nsp4:A146V,RdRp:A97V,nsp13:R392C,S:V213G,ORF3a:L140F","T670G,G2659T,C8991T,C13730T,C17410T,T22200G,C25810T","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N764K,E:T9I,S:N679K,N:P13L,S:N969K,N:S413R,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,6.05,11.41,0.0,0.0
BA.2.3.18,"Omicron,B.1.1.529.2.3.18","nsp1:S135R,nsp4:A146V,nsp13:R392C,S:V213G,S:I692F,ORF3a:L140F","T670G,C8991T,C17410T,T22200G,A23636T,C25810T","3CLpro:P132H,nsp13:R392C,nsp13:I512S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N764K,E:T9I,S:N679K,N:P13L,S:N969K,N:S413R,M:Q19E,S:H655Y,S:I692F,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3.2,"Omicron,B.1.1.529.2.3.2","nsp1:S135R,nsp3:G1440G,nsp13:R392C,S:V213G,ORF3a:L140F,E:S55F","T670G,C7039T,C17410T,T22200G,C25810T,C26408T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,S:P681H,S:L24S,N:P13L,S:Q954H,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:G339D,S:S371F,S:D405N,S:R408S,S:S373P,S:S375F",VOC,,0.0,0.0,13.69,23.92
BA.2.3.20,Omicron,"nsp1:S135R,nsp4:A146V,nsp13:R392C,S:V213G,S:H245N,ORF3a:L140F","T670G,C8991T,C17410T,T22200G,C22295A,C25810T","3CLpro:T45T,3CLpro:P132H,nsp13:R392C,nsp13:T481M,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,S:N164K,S:N764K,E:T9I,S:N679K,S:N969K,N:S413R,N:P13L,S:H655Y,S:Q954H,S:G142D,S:G257D,S:T19I,S:V213G,S:M153T,S:H245N,S:T376A","S:K417N,S:E484K,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484G,S:L452M,S:N450D,S:N460K,S:Q498R,S:D405N,S:K444R,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3.4,"Omicron,B.1.1.529.2.3.4,21L","nsp1:S135R,nsp4:A146V,nsp13:R392C,S:V213G,S:N641S,ORF3a:L140F","T670G,C8991T,C17410T,T22200G,A23484G,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,S:N969K,N:S413R,S:N641S,M:Q19E,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,12.84,18.86,0.0,0.0
BA.2.3.5,"Omicron,B.1.1.529.2.3.5,21L","nsp1:S135R,nsp2:T44I,nsp4:A146V,nsp13:R392C,S:V213G,ORF3a:L140F","T670G,C936T,C8991T,C17410T,T22200G,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,E:T9I,S:N764K,N:P13L,S:Q954H,S:N679K,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3.6,"Omicron,B.1.1.529.2.3.6","nsp1:S135R,nsp4:A146V,nsp13:R392C,S:V213G,S:S255F,ORF3a:L140F","T670G,C8991T,C17410T,T22200G,C22326T,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:Q19E,S:H655Y,E:T9I,S:N679K,S:N764K,N:P13L,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:S255F,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,9.73,15.36,0.0,0.0
BA.2.3.7,"Omicron,B.1.1.529.2.3.7","nsp1:S135R,nsp4:A146V,nsp13:R392C,S:K97E,S:V213G,ORF3a:L140F","T670G,C8991T,C17410T,A21851G,T22200G,C25810T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,E:T9I,S:N679K,S:N764K,N:P13L,N:S413R,M:Q19E,S:Q954H,S:G142D,S:T19I,S:V213G,S:K97E,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3.8,"Omicron,B.1.1.529.2.3.8,21L","nsp1:S135R,nsp3:T754I,nsp3:R883S,nsp4:A146V,nsp13:R392C,S:V213G,ORF3a:L140F","T670G,C4980T,A5368C,C8991T,C17410T,T22200G,C25810T","3CLpro:P132H,nsp13:R392C,nsp13:C471C,3CLpro:Y37Y,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,M:Q19E,N:P13L,N:S413R,S:Q954H,nsp3:T754I,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.3.9,"Omicron,B.1.1.529.2.3.9,21L","nsp1:S135R,nsp4:A146V,nsp13:R392C,S:V213G,ORF3a:L140F,N:G238V","T670G,C8991T,C17410T,T22200G,C25810T,G28986T","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:D796Y,E:T9I,S:N679K,S:N764K,N:G238V,M:Q19E,S:H655Y,S:Q954H,S:N969K,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,14.76,37.21
BA.2.30,"Omicron,21L,B.1.1.529.2.30","nsp1:S135R,nsp3:H295Y,nsp13:R392C,S:V213G,ORF3a:E239D","T670G,C3602T,C17410T,T22200G,G26109T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N764K,E:T9I,S:N679K,S:N969K,N:S413R,M:Q19E,ORF3a:E239D,N:P13L,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.31,"Omicron,21L,B.1.1.529.2.31","nsp1:S135R,nsp6:A268A,nsp7:D77N,nsp13:R392C,S:V213G,nsp1:S135R,nsp3:K1887K,nsp7:D77N,nsp13:R392C,S:V213G","T670G,C11776T,G12071A,C17410T,T22200G,T670G,A8380G,G12071A,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:H655Y,S:D796Y,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,10.35,15.7,0.0,0.0
BA.2.32,"Omicron,B.1.1.529.2.32,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:N354N,ORF7a:A66S","T670G,C17410T,T22200G,C22624T,G27589T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,N:P13L,S:Q954H,S:N679K,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N354N,S:N440K",VOC,,5.2,9.83,0.0,0.0
BA.2.33,"Omicron,B.1.1.529.2.33,21L","nsp1:S135R,nsp3:P395L,nsp3:P1159P,nsp13:R392C,S:V213G","T670G,C3903T,C6196T,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:H655Y,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,S:Q954H,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.34,"Omicron, B.1.1.529.2.34,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:I410I,N:G243S","T670G,C17410T,T22200G,C22792T,G29000A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,S:D796Y,N:G243S,N:P13L,N:S413R,M:Q19E,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.35,"Omicron,B.1.1.529.2.35,20L","nsp1:S135R,nsp13:R392C,S:V213G,S:L452R,N:L221F","T670G,C17410T,T22200G,T22917G,G28936T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:H655Y,S:N764K,E:T9I,S:N679K,S:D796Y,N:L221F,S:N969K,M:Q19E,N:S413R,N:P13L,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,10.45,16.13
BA.2.36,"Omicron,B.1.1.529.2.36,20L","nsp1:S135R,nsp13:R392C,S:I68T,S:V213G,S:I410I","T670G,C17410T,T21765C,T22200G,C22792T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:N969K,M:Q19E,S:H655Y,S:N764K,E:T9I,N:P13L,S:N679K,N:S413R,S:Q954H,S:G142D,S:I68T,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.88,5.38,5.32,10.36
BA.2.37,"Omicron,B.1.1.529.2.37,20L","nsp1:S135R,nsp3:R603K,nsp13:R392C,S:V213G,ORF3a:F8F","T670G,G4527A,C17410T,T22200G,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:H655Y,S:D796Y,S:N969K,M:Q19E,S:N764K,E:T9I,N:P13L,S:N679K,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,8.75,14.6,10.61,15.59
BA.2.38,"Omicron,B.1.1.529.2.38,20L","nsp1:S135R,nsp13:R392C,S:V213G,S:K417T,ORF3a:F8F","T670G,C17410T,T22200G,A22812C,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,E:T9I,S:N764K,S:N679K,S:N969K,N:S413R,M:Q19E,N:P13L,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:K417T,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,2.86,4.69,2.0,3.26
BA.2.38.1,"Omicron,B.1.1.529.2.38.1,20L","nsp1:S135R,nsp13:R392C,S:V213G,S:S221S,S:S247N,S:Y248S,S:K417T,S:K444N,ORF3a:F8F","T670G,C17410T,T22200G,G22225A,G22302A,A22305C,A22812C,G22894T,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:S221S,S:Y248S,S:N969K,E:T9I,S:N679K,S:N764K,M:Q19E,N:P13L,S:Q954H,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:S247N,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:G339D,S:T478K,S:E484A,S:Q498R,S:D405N,S:K444N,S:R408S,S:K417T,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.38.2,"Omicron,B.1.1.529.2.38.2,20L","nsp1:S135R,nsp3:D1478D,nsp13:R392C,S:V213G,S:K417T,S:K444N,ORF3a:F8F","T670G,T7153C,C17410T,T22200G,A22812C,G22894C,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,E:T9I,S:N679K,S:N764K,N:P13L,S:Q954H,S:N969K,N:S413R,M:Q19E,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:K444N,S:R408S,S:K417T,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.38.3,"Omicron,B.1.1.529.2.38.3,20L","nsp1:S135R,nsp13:R392C,S:S71F,S:V213G,S:K417T,ORF3a:F8F","T670G,C17410T,C21774T,T22200G,A22812C,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:T20T,S:N764K,E:T9I,N:P13L,S:Q954H,S:N679K,N:S413R,M:Q19E,S:H655Y,S:G142D,S:T19I,S:S71F,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478R,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:K417T,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.39,"Omicron,B.1.1.529.2.39,20L","nsp1:S135R,RdRp:E744D,nsp13:R392C,S:V213G,S:L858I","T670G,G15672T,C17410T,T22200G,C24134A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,S:L858I,S:H655Y,E:T9I,S:N679K,S:N764K,N:P13L,S:N969K,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.4,"Omicron,B.1.1.529.2.4","nsp1:S135R,nsp6:G277S,nsp13:R392C,S:V213G,ORF6:M58K","T670G,G11801A,C17410T,T22200G,T27374A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,S:N764K,E:T9I,N:P13L,S:Q954H,S:N679K,S:N969K,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.40,"Omicron,21L,B.1.1.529.2.40","nsp1:S135R,nsp13:R392C,nsp15:Q19H,S:V213G,S:K417T","T670G,C17410T,G19677T,T22200G,A22812C","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N764K,E:T9I,N:P13L,S:N679K,S:N969K,N:S413R,S:Q954H,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:K417T,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,6.07,11.16,0.0,0.0
BA.2.40.1,"Omicron,21L,B.1.1.529.2.40.1","nsp1:S135R,nsp4:F24S,nsp13:R392C,nsp15:Q19H,S:V213G,S:K417T","T670G,T8625C,C17410T,G19677T,T22200G,A22812C","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N764K,E:T9I,M:Q19E,S:N679K,S:N969K,N:S413R,N:P13L,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:K417T,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,6.87,12.91,0.0,0.0
BA.2.41,"Omicron,21L,B.1.1.529.2.41","nsp1:S135R,nsp3:L495L,nsp13:R392C,S:V213G,S:T1231S","T670G,C4202T,C17410T,T22200G,A25253T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:Q19E,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.42,"Omicron,21L,B.1.1.529.2.42","nsp1:S135R,nsp13:R392C,S:I68T,S:V213G,N:E378D","T670G,C17410T,T21765C,T22200G,A29407T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,N:E378D,S:D796Y,S:N969K,E:T9I,S:N764K,S:N679K,N:S413R,M:Q19E,N:P13L,S:H655Y,S:Q954H,S:G142D,S:I68T,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.43,"Omicron,21L,B.1.1.529.2.43","nsp1:S135R,nsp2:Q588R,nsp13:R392C,S:V213G,S:S371Y,S:E1202Q","T670G,A2568G,C17410T,T22200G,C22674A,G25166C","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:E1202Q,M:Q19E,E:T9I,S:N764K,N:P13L,S:Q954H,S:N679K,S:N969K,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371Y,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.44,"Omicron,21L,B.1.1.529.2.44","nsp1:S135R,nsp13:R392C,S:V213G,S:S371Y,S:S735S","T670G,C17410T,T22200G,C22674A,A23767G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:H655Y,S:S735S,S:N969K,M:Q19E,S:N764K,E:T9I,N:P13L,S:N679K,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371Y,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.45,"Omicron,21L,B.1.1.529.2.45","nsp1:S135R,nsp4:I292I,nsp13:R392C,S:V213G,S:Y449H","T670G,C9430T,C17410T,T22200G,T22907C","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,M:Q19E,N:S413R,N:P13L,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K,S:Y449H",VOC,,0.0,0.0,8.26,17.42
BA.2.46,"Omicron,B.1.1.529.2.46","nsp1:S135R,nsp13:R392C,S:V213G,S:D1153Y,N:K127K","T670G,C17410T,T22200G,G25019T,A28654G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,N:S413R,N:K127K,S:G142D,S:T19I,S:D1153Y,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.47,"Omicron, B.1.1.529.2.47,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:I410I,S:S1261Y","T670G,C17410T,T22200G,C22792T,C25344A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,M:Q19E,S:N764K,E:T9I,S:N679K,S:S1261Y,N:P13L,S:Q954H,S:N969K,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,7.51,11.09
BA.2.48,"Omicron, B.1.1.529.2.48,21L","nsp1:S135R,nsp3:T504I,nsp13:R392C,S:V213G,S:Y248S","T670G,C4230T,C17410T,T22200G,A22305C","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:Y248S,M:Q19E,S:H655Y,S:N764K,E:T9I,S:D796Y,S:N679K,S:N969K,N:S413R,N:P13L,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.79,5.52,5.99,8.31
BA.2.49,"Omicron, B.1.1.529.2.49,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:I410I,N:D377V","T670G,C17410T,T22200G,C22792T,A29403T","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,S:I410I,RdRp:L758L,N:D377V,S:D796Y,S:L24S,S:P25-,S:N969K,S:P26-,S:H655Y,E:T9I,S:N764K,N:S33-,S:N679K,N:S413R,N:P13L,RdRp:D60D,N:G30G,N:E31-,M:Q19E,N:R32-,S:Q954H,S:G142D,S:T19I,S:L212S,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,12.21,23.33
BA.2.5,"Omicron,B.1.1.529.2.5","nsp1:S135R,nsp3:P200S,nsp13:R392C,S:V213G","T670G,C3317T,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,E:T9I,S:N764K,S:H655Y,S:Q954H,S:N679K,N:P13L,N:S413R,M:Q19E,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,5.49,11.59,9.92,15.41
BA.2.50,"Omicron, B.1.1.529.2.50,21L","nsp1:S135R,nsp3:G1273G,nsp13:R392C,S:L212S,S:V213G","T670G,C6538T,C17410T,T22197C,T22200G","nsp13:R392C,S:A27-,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:D796Y,S:L24S,S:N969K,S:P25-,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,N:S33-,S:P26-,N:E31-,N:R32-,M:Q19E,RdRp:D60D,N:G30G,N:S413R,S:Q954H,S:G142D,S:T19I,S:L212S,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.51,"Omicron, B.1.1.529.2.51,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:I410I,S:T747I","T670G,C17410T,T22200G,C22792T,C23802T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,M:Q19E,S:H655Y,S:T747I,S:N764K,E:T9I,N:P13L,S:N679K,S:N969K,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,10.17,22.41
BA.2.52,"Omicron, B.1.1.529.2.52,21L","nsp1:S135R,nsp2:C475R,nsp13:R392C,S:V213G","T670G,T2228C,C17410T,T22200G","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:H655Y,M:Q19E,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,S:Q954H,S:N969K,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,4.16,8.18,4.92,9.53
BA.2.53,"Omicron, B.1.1.529.2.53,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:Y449N,N:T135I","T670G,C17410T,T22200G,T22907A,C28677T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:H655Y,S:C1248C,S:D796Y,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,S:N969K,N:S413R,M:Q19E,S:G142D,N:T135I,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K,S:Y449N",VOC,,0.0,0.0,6.89,10.12
BA.2.54,"Omicron, B.1.1.529.2.54,21L","nsp1:S135R,nsp3:I385I,nsp13:R392C,S:V213G,S:E1202Q","T670G,C3874T,C17410T,T22200G,G25166C","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:Y248S,S:D796Y,S:E1202Q,M:Q19E,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,S:N969K,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.55,"Omicron, B.1.1.529.2.55,21L","nsp1:S135R,nsp13:R392C,S:I68T,S:V213G,S:T941S","T670G,C17410T,T21765C,T22200G,A24383T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:T941S,S:H655Y,S:N764K,E:T9I,N:P13L,S:Q954H,S:N679K,N:S413R,M:Q19E,S:G142D,S:I68T,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.56,"Omicron, B.1.1.529.2.56,21L","nsp1:S135R,nsp13:A336S,S:V213G,S:L452M","T670G,G17242T,T22200G,C22916A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,N:S413R,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452M,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.57,"Omicron, B.1.1.529.2.57,21L","nsp1:S135R,nsp3:Y1102C,nsp13:R392C,S:V213G,ORF3a:F8F","T670G,A6024G,C17410T,T22200G,C25416T","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:L24S,S:P25-,S:P26-,S:H655Y,E:T9I,S:N764K,M:Q19E,nsp3:Y1102C,S:N679K,S:N969K,N:S413R,N:E31-,N:R32-,N:S33-,N:G30G,N:P13L,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.58,"Omicron, B.1.1.529.2.58,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:V1264L","T670G,C17410T,T22200G,G25352C","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:V1264L,S:L24S,S:N969K,S:P25-,S:N764K,E:T9I,M:Q19E,N:P13L,S:Q954H,N:H145H,S:N679K,S:P26-,N:S413R,N:E31-,N:S33-,N:G30G,N:R32-,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.59,"Omicron, B.1.1.529.2.59,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:D1153Y,ORF3a:C133C","T670G,C17410T,T22200G,G25019T,C25791T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:N764K,E:T9I,S:N679K,S:D796Y,N:D22G,N:P13L,S:N969K,N:S413R,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:T19I,S:D1153Y,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.6,"Omicron,B.1.1.529.2.6","nsp1:S135R,nsp13:R392C,S:V213G,S:I410I,S:N440K,ORF3a:D27H","T670G,C17410T,T22200G,C22792T,T22882G,G25471C","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:H655Y,E:T9I,S:N764K,S:Q954H,S:N679K,S:N969K,N:S413R,M:Q19E,ORF3a:D27H,N:P13L,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,8.36,13.62,5.79,14.17
BA.2.60,"Omicron, B.1.1.529.2.60,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:V1129I,S:P1162S","T670G,C17410T,T22200G,G24947A,C25046T","3CLpro:P132H,nsp13:R392C,S:A27-,S:P1162S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:L24S,S:P25-,M:Q19E,S:P26-,S:N764K,E:T9I,S:Q954H,S:N679K,S:N969K,N:S413R,N:E31-,N:G30G,N:R32-,N:S33-,N:P13L,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.61,"Omicron, B.1.1.529.2.61,21L","nsp1:S135R,nsp13:R392C,S:W64R,S:V213G,S:E1202E","T670G,C17410T,T21752A,T22200G,A25168G","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:E1202E,S:L24S,S:P25-,S:N969K,M:Q19E,S:P26-,S:H655Y,S:N764K,E:T9I,N:P13L,S:Q954H,S:N679K,N:S413R,N:E31-,N:G30G,N:S33-,N:R32-,S:G142D,S:W64R,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.62,"Omicron, B.1.1.529.2.62,21L","nsp1:S135R,nsp3:P395L,nsp3:T976I,nsp13:R392C,S:V213G,ORF3a:H93Y","T670G,C3903T,C5646T,C17410T,T22200G,C25669T","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:L24S,S:P25-,S:N969K,M:Q19E,S:P26-,S:H655Y,S:N764K,E:T9I,N:P13L,N:S33-,S:Q954H,N:Y268Y,S:N679K,N:S413R,N:E31-,N:R32-,N:G30G,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,,,,
BA.2.63,"Omicron, B.1.1.529.2.63,21L","nsp1:S135R,nsp3:S126L,nsp13:R392C,S:V213G","T670G,C3096T,C17410T,T22200G","nsp13:R392C,S:A27-,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:D796Y,S:P25-,S:N969K,M:Q19E,S:L24S,S:P26-,S:H655Y,S:N764K,E:T9I,S:N679K,N:G30G,S:Q954H,N:S413R,N:P13L,N:E31-,N:R32-,N:S33-,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.64,"Omicron, B.1.1.529.2.64,21L","nsp1:S135R,nsp3:I414I,nsp6:L98F,nsp13:R392C,S:V213G","T670G,C3961T,G11266T,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:H655Y,S:L24S,S:P25-,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,N:S33-,S:N969K,N:S413R,N:R32-,M:Q19E,N:E31-,N:G30G,S:Q954H,S:G142D,N:T135T,S:T19I,S:P26-,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:G339D,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.65,"Omicron, B.1.1.529.2.65,21L","nsp1:S135R,nsp13:R392C,S:V213G,ORF8:Q18*","T670G,C17410T,T22200G,C27945T","nsp13:R392C,S:A27-,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:H655Y,S:L24S,S:P26-,S:N969K,M:Q19E,S:P25-,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,N:G30G,S:Q954H,N:S413R,N:S33-,N:E31-,N:R32-,ORF8:Q18*,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,2.75,4.36,8.42,14.94
BA.2.66,"Omicron, B.1.1.529.2.66,21L","nsp1:S135R,nsp2:N133K,nsp13:R392C,S:V213G,ORF3a:F8F","T670G,C1204A,C17410T,T22200G,C25416T","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:L24S,S:P25-,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,S:N969K,S:P26-,N:R32-,N:S33-,N:E31-,N:S413R,M:Q19E,N:G30G,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.67,"Omicron, B.1.1.529.2.67,21L","nsp1:S135R,GFL:D64E,nsp13:R392C,S:V213G,ORF3a:F8F","T670G,T13216G,C17410T,T22200G,C25416T","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:L24S,S:P25-,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,N:S33-,S:N969K,S:P26-,nsp3:V1768V,N:E31-,M:Q19E,N:G30G,N:S413R,N:R32-,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.68,"Omicron, B.1.1.529.2.68,21L","nsp1:S135R,nsp3:Y996C,GFL:G34R,nsp13:R392C,S:V213G,ORF3a:F8F","T670G,A5706G,G13124A,C17410T,T22200G,C25416T","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:P25-,S:P26-,S:L24S,S:N764K,E:T9I,N:S33-,S:N679K,S:N969K,N:S413R,N:R32-,M:Q19E,N:E31-,N:G30G,N:P13L,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.7,"Omicron,B.1.1.529.2.7","nsp1:S135R,nsp3:T1306I,nsp13:R392C,S:V213G,S:I410I","T670G,C6636T,C17410T,T22200G,C22792T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,M:Q19E,E:T9I,S:N679K,S:N764K,N:P13L,S:Q954H,S:N969K,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,5.72,10.82,9.86,21.52
BA.2.70,"Omicron, B.1.1.529.2.70,21L","nsp1:S135R,nsp2:I21V,nsp3:K837N,nsp13:R392C,S:V213G","T670G,A866G,G5230T,C17410T,T22200G","nsp13:R392C,S:A27-,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:L24S,S:P25-,S:P26-,M:Q19E,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,N:F110F,S:Q954H,S:N969K,N:S413R,N:G30G,N:E31-,S:H655Y,N:R32-,N:S33-,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.71,"Omicron, B.1.1.529.2.71,21L","nsp1:S135R,nsp13:R392C,S:W64R,S:V213G,S:I410I","T670G,C17410T,T21752C,T22200G,C22792T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:H655Y,S:D796Y,M:Q19E,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,S:N969K,N:S413R,S:G142D,S:W64R,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,4.16,7.41,2.23,3.69
BA.2.72,"Omicron, B.1.1.529.2.72,21L","nsp1:S135R,nsp13:R392C,S:L212S,S:V213G,S:I410I,S:H1101H","T670G,C17410T,T22197C,T22200G,C22792T,C24865T","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:L24S,S:P25-,S:H655Y,S:H1101H,S:N764K,E:T9I,S:N679K,M:Q19E,N:P13L,N:G30G,S:N969K,S:P26-,N:S33-,N:E31-,N:S413R,N:R32-,S:Q954H,S:G142D,S:T19I,S:L212S,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,2.32,3.81,0.0,0.0
BA.2.73,"Omicron,B.1.1.529.2.73","nsp1:S135R,nsp3:P1469S,nsp13:R392C,S:V213G,S:G257S","T670G,C7124T,C17410T,T22200G,G22331A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,N:S413R,M:Q19E,S:Q954H,S:G142D,S:G257S,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,7.93,12.47,0.0,0.0
BA.2.74,"Omicron,B.1.1.529.2.74","nsp1:V106V,nsp1:S135R,nsp13:R392C,S:V213G,S:R346T,S:L452M,ORF3a:F8F","C583T,T670G,C17410T,T22200G,G22599C,C22916A,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,S:N764K,E:T9I,S:N679K,N:P13L,S:N969K,N:S413R,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:R346T,S:E484A,S:L452M,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.75,"Omicron,B.1.1.529.2.75","nsp1:S135R,nsp13:R392C,S:K147E,S:W152R,S:V213G","T670G,C17410T,A22001G,T22016C,T22200G","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:I210V,S:P26-,S:L24S,S:H655Y,S:N764K,E:T9I,S:P25-,S:D796Y,M:Q19E,N:S33-,S:N679K,S:N969K,N:S413R,N:R32-,N:E31-,N:G30G,N:P13L,S:Q954H,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:G446S,S:E484A,S:N460K,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,2.52,3.13,0.0,0.0
BA.2.75.1,"Omicron,B.1.1.529.2.75.1","nsp1:S135R,nsp13:R392C,S:K147E,S:W152R,S:V213G,S:D574V","T670G,C17410T,A22001G,T22016C,T22200G,A23283T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:I210V,S:D574V,S:H655Y,E:T9I,S:N764K,S:D796Y,M:Q19E,N:P13L,S:N679K,S:N969K,N:S413R,S:Q954H,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:G446S,S:E484A,S:N460K,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.75.2,"Omicron, B.1.1.529.2.75.2","nsp1:S135R,nsp13:R392C,S:K147E,S:W152R,S:V213G,S:R346T,S:F486S,S:D1199N","T670G,C17410T,A22001G,T22016C,T22200G,G22599C,T23019C,G25157A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:I210V,S:H655Y,S:D1199N,S:N764K,E:T9I,S:N679K,S:N969K,N:P13L,N:S413R,M:Q19E,S:Q954H,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:G446S,S:R346T,S:E484A,S:N460K,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486S,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.75.3,BA.2.75.3,"nsp1:S135R,nsp13:R392C,S:K147E,S:W152R,S:V213G","T670G,C17410T,A22001G,T22016C,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:I210V,M:Q19E,S:H655Y,S:N764K,E:T9I,S:D796Y,S:N679K,S:N969K,N:S413R,N:P13L,S:Q954H,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:G446S,S:E484A,S:N460K,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.75.4,BA.2.75.4,"nsp1:S135R,nsp4:F326F,nsp13:R392C,S:K147E,S:W152R,S:V213G,S:L452R","T670G,C9532T,C17410T,A22001G,T22016C,T22200G,T22917G","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:I210V,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,S:Q954H,N:S413R,S:H655Y,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:G339D,S:T478K,S:G446S,S:E484A,S:L452R,S:N460K,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.75.5,"Omicron,B.1.1.529.2.75.5","nsp1:S135R,nsp13:R392C,S:K147E,S:W152R,S:V213G,S:K356T","T670G,C17410T,A22001G,T22016C,T22200G,A22629C","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:I210V,S:D796Y,S:H655Y,M:Q19E,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,S:N969K,N:S413R,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:G446S,S:E484A,S:N460K,S:Q498R,S:D405N,S:R408S,S:S373P,S:K356T,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.76,"Omicron, B.1.1.529.2.76,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:Y248N,S:R346T","T670G,C17410T,T22200G,T22304A,G22599C","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:L24S,S:P25-,S:P26-,S:N969K,M:Q19E,E:T9I,S:N764K,N:P13L,N:G30G,S:N679K,N:S413R,N:E31-,N:S33-,N:R32-,S:Q954H,S:G142D,S:T19I,S:Y248N,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:R346T,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,4.35,5.9,1.76,2.81
BA.2.76.1,"Omicron, B.1.1.529.2.76.1,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:Y248N,S:R346T,S:R357K","T670G,C17410T,T22200G,T22304A,G22599C,G22632A","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,S:H655Y,S:N764K,E:T9I,S:N679K,S:N969K,S:Y248N,N:S413R,N:P13L,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:G339D,S:T478K,S:R346T,S:E484A,S:R357K,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.77,"Omicron, B.1.1.529.2.77,21L","nsp1:S135R,nsp13:R392C,S:V213G,S:E340K,S:K356T,S:D936H","T670G,C17410T,T22200G,G22580A,A22629C,G24368C","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:L24S,S:P25-,S:P26-,S:N969K,M:Q19E,S:D936H,E:T9I,S:N764K,S:Q954H,S:N679K,N:S413R,N:G30G,M:S4F,N:E31-,N:R32-,N:S33-,N:P13L,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:K356T,S:Q493R,S:Y505H,S:S375F,S:E340K,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.78,"Omicron, B.1.1.529.2.78,21L","nsp1:S135R,3CLpro:K90R,nsp13:R392C,S:V213G,S:L452M,ORF10:R24L","T670G,A10323G,C17410T,T22200G,C22916A,G29628T","3CLpro:K90R,3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:D796Y,S:P25-,M:Q19E,S:L24S,S:P26-,S:H655Y,S:N764K,E:T9I,S:N679K,N:G30G,S:Q954H,S:N969K,N:S413R,N:P13L,N:E31-,N:R32-,N:S33-,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452M,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.79,"Omicron, B.1.1.529.2.79,21L","nsp1:S135R,nsp13:Y217Y,nsp13:R392C,S:V213G,S:N450D","T670G,C16887T,C17410T,T22200G,A22910G","3CLpro:P132H,nsp13:R392C,S:A27-,3CLpro:R131R,RdRp:L758L,S:Y248S,S:D796Y,S:L24S,S:P25-,S:N969K,S:P26-,S:H655Y,S:N764K,E:T9I,N:P13L,N:S33-,N:G30G,S:N679K,N:S413R,N:E31-,N:R32-,M:Q19E,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:N450D,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.03,11.63,0.0,0.0
BA.2.79.1,"Omicron, B.1.1.529.2.79.1,21L","nsp1:S135R,nsp3:T1198I,nsp13:Y217Y,nsp13:R392C,S:V213G,S:N450D","T670G,C6312T,C16887T,C17410T,T22200G,A22910G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:Q19E,S:H655Y,S:N764K,E:T9I,N:P13L,S:N679K,N:S413R,S:Q954H,S:G142D,S:T19I,S:Y248S,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:N450D,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.8,"Omicron,B.1.1.529.2.8","nsp1:S135R,nsp13:R392C,S:V213G,ORF3a:T9K,ORF3a:A31T","T670G,C17410T,T22200G,C25418A,G25483A","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:N969K,S:N764K,E:T9I,S:N679K,S:D796Y,S:Q954H,S:H655Y,N:S413R,M:Q19E,ORF3a:A31T,N:P13L,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,15.39,23.21
BA.2.80,"Omicron, B.1.1.529.2.80,21L","nsp1:S135R,nsp3:R586C,nsp13:R392C,S:V213G,S:E340Q,S:K356T,S:I410I","T670G,C4475T,C17410T,T22200G,G22580C,A22629C,C22792T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,3CLpro:D155G,S:I410I,RdRp:L758L,S:Q564E,S:H655Y,M:Q19E,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,S:Q954H,S:N969K,N:S413R,S:G142D,S:T19I,S:S71P,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:R346T,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:K356T,S:Q493R,S:Y505H,S:S375F,S:E340K,S:E340Q,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.81,"Omicron, B.1.1.529.2.81,21L","nsp1:S135R,nsp3:S1206S,RdRp:I244T,nsp13:R392C,S:V213G,S:I410I","T670G,G6337T,T14171C,C17410T,T22200G,C22792T","3CLpro:P132H,nsp13:R392C,nsp13:F422F,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:G798D,S:N969K,M:Q19E,S:H655Y,S:N764K,E:T9I,S:Q954H,S:N679K,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.82,"Omicron,B.1.1.529.2.82,20L","nsp1:S135R,nsp8:A63T,GFL:T58I,nsp13:R392C,S:V213G","T670G,G12278A,C13197T,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,S:N969K,N:S413R,nsp3:S1494S,S:Q954H,S:G142D,S:I68T,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:R346T,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.9,"Omicron,B.1.1.529.2.9","nsp1:S135R,nsp13:R392C,S:V213G,S:I410I,ORF3a:H78Y","T670G,C17410T,T22200G,C22792T,C25624T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,S:N969K,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,2.76,4.67,3.37,5.89
BA.2.9.1,"Omicron,B.1.1.529.2.9.1","nsp1:S135R,nsp2:K142R,nsp13:R392C,S:V213G,S:I410I,S:L452M,ORF3a:H78Y","T670G,A1230G,C17410T,T22200G,C22792T,C22916A,C25624T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:N969K,S:N764K,E:T9I,M:Q19E,S:H655Y,S:Q954H,S:Q957Q,N:P67S,S:N679K,N:S412I,N:S413R,N:P13L,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452M,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,10.86,15.97
BA.2.9.2,"Omicron,B.1.1.529.2.9.2","nsp1:S135R,nsp3:T1189I,nsp13:R392C,S:V213G,S:I410I,ORF3a:H78Y","T670G,C6285T,C17410T,T22200G,C22792T,C25624T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,S:Q954H,nsp3:T1189I,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,24.55,39.21,0.0,0.0
BA.2.9.3,"Omicron,B.1.1.529.2.9.3","nsp1:S135R,nsp13:R392C,S:W64R,S:V213G,S:I410I,ORF3a:H78Y","T670G,C17410T,T21752C,T22200G,C22792T,C25624T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:N969K,E:T9I,S:N679K,S:N764K,N:P13L,S:Q954H,N:S413R,M:Q19E,S:H655Y,S:G142D,S:W64R,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,2.25,3.76
BA.2.9.4,"Omicron,B.1.1.529.2.9.4","nsp1:S135R,nsp13:R392C,S:V213G,S:R346T,S:I410I,ORF3a:H78Y,ORF7a:L5F","T670G,C17410T,T22200G,G22599C,C22792T,C25624T,C27406T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,N:P13L,S:Q954H,S:N679K,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:R346T,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.2.9.5,"Omicron,B.1.1.529.2.9.5","nsp1:S135R,nsp3:V575A,nsp13:R392C,S:V213G,S:I410I,ORF3a:H78Y","T670G,T4443C,C17410T,T22200G,C22792T,C25624T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,S:I410I,RdRp:L758L,S:H655Y,E:T9I,S:N679K,S:D796Y,M:Q19E,N:P13L,S:N969K,N:S413R,S:Q954H,S:N764K,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,9.47,20.98
BA.2.9.6,"Omicron,B.1.1.529.2.9.6","nsp1:S135R,nsp3:P822S,nsp13:R392C,S:V213G,S:I410I,ORF3a:H78Y","T670G,C5183T,C17410T,T22200G,C22792T,C25624T","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,S:I410I,RdRp:L758L,S:N969K,M:Q19E,S:H655Y,E:T9I,S:N679K,S:N764K,S:D796Y,N:P13L,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452M,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,10.62,17.42
BA.3,"England/MILK-2D24AC9/2021,MILK-2D24AC9,Omicron, B.1.1.529.3","nsp1:S135R,nsp2:N9N,nsp6:A88V,N:F346F","T670G,C832T,C11235T,C29311T","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:N764K,S:T95I,E:T9I,S:Q954H,S:N679K,S:N969K,N:F346F,M:Q19E,N:P13L,N:S413R,S:G142D,S:N211I",,VOC,,0.0,0.0,0.0,0.0
BA.3.1,"England/MILK-2D24AC9/2021,MILK-2D24AC9,Omicron, B.1.1.529.3.1","nsp1:S135R,nsp2:N9N,nsp6:A88V,S:K417T","T670G,C832T,C11235T,A22812C","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,S:T95I,N:S413R,M:Q19E,S:G142D,S:N211I",S:K417T,VOC,,0.0,0.0,0.0,0.0
BA.4,"Omicron,B.1.1.529.4","nsp1:S135R,S:F486V,ORF7b:L11F,N:P151S","T670G,T23018G,G27788T,C28724T","3CLpro:P132H,nsp13:R392C,S:A27-,N:P151S,3CLpro:R131R,RdRp:L758L,S:N969K,S:L24S,S:P25-,E:T9I,S:D796Y,N:G30G,S:Q954H,S:N679K,N:P13L,N:S413R,N:E31-,N:S33-,M:Q19E,S:H655Y,N:R32-,S:N764K,S:V70-,S:G142D,S:T19I,S:H69-,S:P26-,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.58,2.43,1.65,2.53
BA.4.1,"Omicron,B.1.1.529.4.1","nsp1:S135R,S:V3G,S:F486V,N:P151S","T670G,T21570G,T23018G,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,N:P13L,S:Q954H,S:N679K,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.55,7.38,4.05,4.44
BA.4.1.1,"Omicron,B.1.1.529.4.1.1","nsp1:S135R,S:V3G,S:F486V,S:I670V,N:P151S","T670G,T21570G,T23018G,A23570G,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:I670V,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,S:Q954H,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,4.87,7.34,4.01,6.98
BA.4.1.2,"Omicron,B.1.1.529.4.1.2","nsp1:S135R,nsp3:P153S,RdRp:P322S,RdRp:P323L,S:V3G,S:F486V,ORF7a:P84L,N:P151S","T670G,C3176T,C14407T,C14408T,T21570G,T23018G,C27644T,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:H655Y,E:T9I,S:N679K,S:N764K,S:D796Y,S:N969K,M:Q19E,N:S413R,N:P13L,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.4.1.3,"Omicron,B.1.1.529.4.1.3","nsp1:S135R,nsp2:R544G,S:V3G,S:F486V,N:P151S","T670G,A2435G,T21570G,T23018G,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:N969K,E:T9I,S:N679K,S:N764K,S:D796Y,N:T54T,N:P13L,N:S413R,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.4.1.4,"Omicron,B.1.1.529.4.1.4","nsp1:S135R,S:V3G,S:F486V,S:C1235F,N:P151S","T670G,T21570G,T23018G,G25266T,C28724T","3CLpro:P132H,nsp13:R392C,nsp13:R409R,N:P151S,3CLpro:R131R,RdRp:L758L,S:H655Y,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,S:Q954H,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.4.1.5,BA.4.1.5,"nsp1:S135R,nsp3:P109P,S:V3G,S:F486V,N:P151S","T670G,A3046G,T21570G,T23018G,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.4.1.6,"Omicron,B.1.1.529.4.1.6","nsp1:S135R,GFL:T102I,S:V3G,S:F486V,N:P151S","T670G,C13329T,T21570G,T23018G,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:Q19E,E:T9I,S:N679K,S:N764K,N:S413R,N:P13L,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,4.81,7.58,0.0,0.0
BA.4.1.8,"Omicron,B.1.1.529.4.1.8","nsp1:S135R,S:V3G,S:R346T,S:F486V,N:R149R,N:P151S","T670G,T21570G,G22599C,T23018G,C28720T,C28724T","3CLpro:P132H,nsp13:R392C,N:R149R,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,S:Q954H,S:N969K,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:R346T,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,2.86,5.09,0.0,0.0
BA.4.1.9,BA.4.1.9,"nsp1:S135R,S:V3G,S:R346T,ORF7b:L11F,N:P151S","T670G,T21570G,G22599C,G27788T,C28724T","nsp13:R392C,3CLpro:P132H,N:P151S,3CLpro:R131R,RdRp:L758L,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:G339D,S:S371F,S:R346T,S:D405N,S:R408S,S:S373P,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.4.2,"Omicron,B.1.1.529.4.2","nsp1:S135R,nsp3:H818Q,S:F486V,N:P151S","T670G,C5173A,T23018G,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,S:D796Y,M:Q19E,N:P13L,S:Q954H,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,2.28,3.51,0.0,0.0
BA.4.3,"Omicron,B.1.1.529.4.3","nsp1:S135R,S:F486V,S:N658S,N:P151S","T670G,T23018G,A23535G,C28724T","nsp13:R392C,3CLpro:P132H,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N658S,S:N969K,S:N764K,E:T9I,M:Q19E,S:Q954H,S:N679K,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.4.4,"Omicron,B.1.1.529.4.4","nsp1:S135R,S:F486V,S:N658S,ORF3a:L106F,N:P151S","T670G,T23018G,A23535G,C25708T,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:N764K,E:T9I,S:N679K,S:N658S,N:P13L,N:S413R,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.61,6.8,3.66,7.01
BA.4.5,"Omicron,B.1.1.529.4.5","nsp1:S135R,S:F486V,S:Q1201L,N:P151S","T670G,T23018G,A25164T,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:Q1201L,S:N969K,S:H655Y,S:N764K,E:T9I,M:Q19E,N:P13L,S:Q954H,S:N679K,N:S413R,S:N658S,S:G142D,S:T19I,S:V213G,S:G181E,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.4.6,"Omicron,B.1.1.529.4.6","nsp1:S135R,S:R346T,S:F486V,S:N658S,N:P151S","T670G,G22599C,T23018G,A23535G,C28724T","nsp13:R392C,S:A27-,3CLpro:P132H,N:P151S,3CLpro:R131R,RdRp:L758L,S:N969K,S:L24S,S:P26-,S:H655Y,E:T9I,S:P25-,S:N764K,S:D796Y,S:Q954H,S:N679K,N:S413R,N:E31-,N:S33-,N:R32-,M:Q19E,N:G30G,S:N658S,N:P13L,S:V70-,S:G142D,S:T19I,S:H69-,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:R346T,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.12,3.66,3.52,6.02
BA.4.6.1,"Omicron,B.1.1.529.4.6.1","nsp1:S135R,S:W152L,S:R346T,S:F486V,S:N658S,N:P151S","T670G,G22017T,G22599C,T23018G,A23535G,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:Q19E,E:T9I,S:N764K,S:N658S,S:Q954H,S:N679K,N:S413R,N:P13L,S:H655Y,S:G142D,S:T19I,S:V213G,S:W152L,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:R346T,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.4.7,"Omicron,B.1.1.529.4.7","nsp1:S135R,S:R346S,S:F486V,ORF3a:I47V,N:P151S","T670G,A22600T,T23018G,A25531G,C28724T","3CLpro:P132H,nsp13:R392C,N:P151S,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,E:T9I,S:N679K,S:N764K,N:P13L,N:S413R,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:R346S,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5,"Omicron, B.1.1.529.5","nsp1:S135R,S:F486V","T670G,T23018G","3CLpro:P132H,nsp13:R392C,S:A27-,S:H655Y,S:L24S,S:P25-,S:N969K,S:N764K,E:T9I,S:N679K,S:D796Y,S:Q954H,S:P681H,N:S413R,M:D3N,N:E31-,N:R32-,N:G30G,M:Q19E,N:P13L,N:S33-,S:V70-,S:G142D,S:T19I,S:H69-,S:P26-,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.67,2.42,1.55,2.36
BA.5.1,"Omicron, B.1.1.529.5.1","nsp1:S135R,S:F486V,ORF10:L37F","T670G,T23018G,C29666T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,M:Q19E,S:N764K,E:T9I,S:N679K,S:P681H,N:P13L,S:Q954H,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.79,2.63,1.62,2.48
BA.5.1.1,"Omicron,B.1.1.529.5.1.1","nsp1:S135R,S:F486V,ORF3a:L94I,ORF10:L37F","T670G,T23018G,C25672A,C29666T","nsp13:R392C,3CLpro:P132H,S:D796Y,S:N969K,M:D3N,E:T9I,S:N679K,S:P681H,S:N764K,M:Q19E,N:P13L,S:H655Y,N:S413R,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.15,5.79,0.0,0.0
BA.5.1.10,"Omicron, B.1.1.529.5.1.10","nsp1:S135R,nsp6:K270R,S:F486V,ORF10:L37F","T670G,A11781G,T23018G,C29666T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:P681H,M:Q19E,N:P13L,S:Q954H,N:D63D,S:N679K,N:S413R,M:D3N,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.03,6.06,3.59,7.03
BA.5.1.11,Omicron,"nsp1:S135R,nsp3:I1550T,S:F486V,ORF10:L37F","T670G,T7368C,T23018G,C29666T","3CLpro:P132H,nsp13:R392C,S:H655Y,E:T9I,S:P681H,M:Q19E,N:P13L,S:D796Y,S:N679K,S:N969K,N:A211S,N:S413R,M:D3N,S:Q954H,S:N764K,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,2.92,4.72
BA.5.1.12,BA.5.1.12,"nsp1:S135R,S:V445A,S:F486V,ORF10:L37F","T670G,T22896C,T23018G,C29666T","3CLpro:P132H,nsp13:R392C,S:D796Y,M:D3N,M:Q19E,E:T9I,S:N764K,S:Q954H,S:N679K,S:P681H,S:N969K,N:S413R,N:P13L,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:V445A,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.1.18,BA.5.1.18,"nsp1:S135R,S:R346T,S:F486V,ORF10:L37F","T670G,G22599C,T23018G,C29666T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:P681H,M:Q19E,S:Q954H,S:N679K,N:S413R,N:P13L,M:D3N,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:R346T,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.1.19,Omicron,"nsp1:S135R,RdRp:G670C,S:F486V,ORF3a:K21N,ORF10:L37F","T670G,G15451T,T23018G,G25455T,C29666T","3CLpro:P132H,nsp13:R392C,nsp13:P504L,S:D796Y,S:H655Y,S:N764K,E:T9I,M:Q19E,N:P13L,S:Q954H,S:N679K,S:P681H,S:N969K,N:S413R,nsp3:S1494S,ORF3a:K21N,M:D3N,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.1.2,"Omicron, B.1.1.529.5.1.2","nsp1:S135R,S:F486V,ORF6:V5I,ORF10:L37F","T670G,T23018G,G27214A,C29666T","3CLpro:P132H,nsp13:R392C,S:N969K,M:D3N,S:H655Y,E:T9I,S:N764K,S:D796Y,N:P13L,S:Q954H,S:N679K,S:P681H,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.04,5.5,3.22,5.63
BA.5.1.20,BA.5.1.20,"nsp1:S135R,nsp3:K589M,S:R346T,S:F486V,ORF10:C19C,ORF10:L37F","T670G,A4485T,G22599C,T23018G,C29614T,C29666T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,S:H655Y,E:T9I,S:P681H,S:N764K,M:Q19E,N:P13L,S:Q954H,S:N679K,N:S413R,M:D3N,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:R346T,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.1.3,"Omicron, B.1.1.529.5.1.3","nsp1:S135R,S:V289I,S:F486V,ORF10:L37F","T670G,G22427A,T23018G,C29666T","3CLpro:P132H,nsp13:R392C,S:V289I,S:N969K,M:Q19E,S:N764K,E:T9I,S:N679K,S:D796Y,N:P13L,S:P681H,N:S413R,M:D3N,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.09,5.41,3.22,6.19
BA.5.1.4,"Omicron, B.1.1.529.5.1.4","nsp1:S135R,nsp3:V299I,nsp3:S692C,S:F486V,ORF10:L37F","T670G,G3614A,C4794G,T23018G,C29666T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,E:T9I,S:P681H,S:N764K,N:P13L,S:Q954H,S:N679K,S:H655Y,M:D3N,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,4.79,10.53
BA.5.1.5,"Omicron, B.1.1.529.5.1.5","nsp1:S135R,nsp13:Y64Y,S:F486V,S:P1263Q,ORF10:L37F","T670G,C16428T,T23018G,C25350A,C29666T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,E:T9I,S:N764K,S:H655Y,S:Q954H,S:N679K,S:P681H,S:P1263Q,M:Q19E,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,3.04,5.59
BA.5.1.6,"Omicron, B.1.1.529.5.1.6","nsp1:S135R,nsp3:V635I,S:F486V,ORF10:L37F","T670G,G4622A,T23018G,C29666T","3CLpro:P132H,nsp13:R392C,S:H655Y,S:N969K,M:D3N,M:Q19E,S:N764K,E:T9I,S:N679K,S:P681H,S:D796Y,S:Q954H,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.54,5.0,0.0,0.0
BA.5.1.7,"Omicron, B.1.1.529.5.1.7","nsp1:S135R,RdRp:A529V,nsp15:T281I,S:F486V,ORF10:L37F","T670G,C15026T,C20462T,T23018G,C29666T","nsp13:R392C,3CLpro:P132H,nsp13:C19C,S:D796Y,S:N969K,M:D3N,S:N764K,E:T9I,S:N679K,M:Q19E,S:Q954H,S:P681H,N:S413R,N:P13L,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.1.8,"Omicron, B.1.1.529.5.1.8","nsp1:S135R,3CLpro:D248D,nsp9:T21I,S:F486V,ORF10:L37F","T670G,C10798T,C12747T,T23018G,C29666T","nsp13:R392C,3CLpro:P132H,S:D796Y,S:N969K,S:N764K,E:T9I,S:N679K,S:P681H,N:S413R,M:D3N,N:P13L,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.1.9,"Omicron, B.1.1.529.5.1.9","nsp1:S135R,nsp3:H834H,S:F486V,ORF6:D6G,ORF10:L37F","T670G,C5221T,T23018G,A27218G,C29666T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:H655Y,S:N969K,M:D3N,S:N764K,E:T9I,S:N679K,S:P681H,M:Q19E,N:P13L,S:Q954H,N:Y268Y,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.10,"Omicron,B.1.1.529.5.10","nsp1:S135R,nsp2:R27C,S:A262S,S:F486V","T670G,C884T,G22346T,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,M:Q19E,E:T9I,S:N679K,S:P681H,S:N764K,N:P13L,N:P383P,N:S413R,S:H655Y,S:Q954H,S:G142D,S:A262S,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.2,"Omicron, B.1.1.529.5.2","nsp1:S135R,M:D3N,N:G19G","T670G,G26529A,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,M:D3N,E:T9I,S:P681H,S:N764K,N:P13L,N:G19G,S:Q954H,S:N679K,S:N969K,S:H655Y,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.75,2.53,1.53,2.33
BA.5.2.1,"Omicron, B.1.1.529.5.2.1","nsp1:S135R,nsp2:L274L,M:D3N,M:T172T,N:G19G","T670G,C1627T,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:H655Y,S:N764K,E:T9I,S:N679K,S:P681H,N:P13L,M:T172T,S:N969K,N:G19G,N:S413R,M:Q19E,M:D3N,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.77,2.55,1.58,2.38
BA.5.2.2,"Omicron, B.1.1.529.5.2.2","nsp1:S135R,nsp8:Q73Q,nsp13:T127N,nsp13:R392C,nsp15:G246S,S:F486V,M:D3N,N:G19G","T670G,G12310A,C16616A,C17410T,G20356A,T23018G,G26529A,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,S:H655Y,S:N764K,E:T9I,N:P13L,N:G19G,S:Q954H,S:N679K,S:P681H,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.2.3,"Omicron, B.1.1.529.5.2.3","nsp1:K120N,nsp1:S135R,nsp8:Q73Q,nsp13:T127N,M:D3N,N:G19G","G625T,T670G,G12310A,C16616A,G26529A,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,S:N764K,E:T9I,S:N679K,N:P13L,S:P681H,N:S413R,M:L164L,M:Q19E,M:D3N,N:G19G,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.11,5.36,4.31,8.89
BA.5.2.4,"Omicron, B.1.1.529.5.2.4","nsp1:S135R,nsp2:L137L,nsp8:Q73Q,S:T547I,M:D3N,N:G19G","T670G,T1216C,G12310A,C23202T,G26529A,A28330G","3CLpro:P132H,3CLpro:T196T,nsp13:R392C,S:N969K,M:Q19E,S:H655Y,E:T9I,S:N679K,S:N764K,S:D796Y,S:P681H,N:P13L,N:S413R,M:D3N,S:T547I,N:G19G,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.2.6,BA.5.2.6,"nsp1:S135R,nsp8:Q73Q,nsp13:T127N,S:R346T,M:D3N,M:L164L,N:G19G","T670G,G12310A,C16616A,G22599C,G26529A,C27012T,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,M:D3N,E:T9I,S:P681H,S:N764K,N:G19G,S:Q954H,S:N679K,S:N969K,S:H655Y,N:S413R,M:L164L,M:Q19E,N:P13L,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:R346T,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.2.7,Omicron,"nsp1:S135R,nsp8:Q73Q,nsp13:T127N,S:K444M,M:D3N,N:G19G","T670G,G12310A,C16616A,A22893T,G26529A,A28330G","3CLpro:P132H,nsp13:R392C,E:T9I,S:N679K,S:P681H,S:N764K,S:D796Y,N:P13L,S:Q954H,M:L164L,S:N969K,N:S413R,M:D3N,M:Q19E,N:G19G,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:K444M,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.3,"Omicron, B.1.1.529.5.3","nsp1:S135R,nsp2:Q376K,S:F486V","T670G,C1931A,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,S:H655Y,E:T9I,S:N764K,N:P13L,S:Q954H,S:N679K,S:P681H,N:S413R,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.92,2.77,1.55,2.33
BA.5.3.1,"Omicron, B.1.1.529.5.3.1","nsp1:S135R,nsp2:Q376K,S:F486V,N:E136D","T670G,C1931A,T23018G,G28681T","nsp13:R392C,3CLpro:P132H,S:D796Y,S:N969K,M:D3N,E:T9I,S:P681H,S:N764K,M:Q19E,N:P13L,S:H655Y,S:N679K,N:S413R,S:Q954H,S:G142D,S:T19I,N:E136D,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.9,2.74,1.53,2.29
BA.5.3.2,"Omicron, B.1.1.529.5.3.2","nsp1:R119H,nsp1:S135R,nsp2:Q376K,S:F486V","G621A,T670G,C1931A,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,S:N764K,E:T9I,S:N679K,S:P681H,M:Q19E,N:P13L,S:Q954H,N:S413R,M:D3N,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,3.45,6.16
BA.5.3.3,"Omicron, B.1.1.529.5.3.3","nsp1:S135R,nsp2:Q376K,nsp3:S1375F,S:F486V","T670G,C1931A,C6843T,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,E:T9I,S:N679K,S:P681H,S:N764K,N:P13L,S:Q954H,nsp3:S1375F,N:S413R,M:Q19E,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,3.45,6.27
BA.5.3.4,"Omicron, B.1.1.529.5.3.4","nsp1:S135R,nsp2:Q376K,S:F486V","T670G,C1931A,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,S:H655Y,S:N764K,E:T9I,S:P681H,N:P13L,S:Q954H,S:N679K,M:Q19E,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:T478K,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.5,"Omicron, B.1.1.529.5.5","nsp1:S135R,S:T76I,S:F486V","T670G,C21789T,T23018G","nsp13:R392C,3CLpro:P132H,S:N969K,E:T9I,S:N679K,S:P681H,S:N764K,S:D796Y,M:Q19E,S:H655Y,M:D3N,N:S413R,N:P13L,S:Q954H,S:G142D,S:T19I,S:V213G,S:T76I,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,2.16,3.27,3.31,5.91
BA.5.5.1,"Omicron, B.1.1.529.5.5.1","nsp1:S135R,S:T76I,S:N450D,S:F486V,ORF8:V62L","T670G,C21789T,A22910G,T23018G,G28077T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,S:N764K,E:T9I,S:N679K,S:P681H,M:Q19E,S:Q954H,N:S413R,N:P13L,ORF8:V62L,M:D3N,S:H655Y,S:G142D,S:T19I,S:V213G,S:T76I,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:G339D,S:T478K,S:E484A,S:L452R,S:N450D,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.67,5.9,0.0,0.0
BA.5.5.2,"Omicron, B.1.1.529.5.5.2","nsp1:S135R,RdRp:G671V,S:T76I,S:F486V","T670G,G15452T,C21789T,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:Q677H,S:N679K,M:Q19E,S:V1068V,S:Q954H,S:P681H,N:S413R,N:P13L,M:D3N,S:G142D,S:T19I,S:V213G,S:T76I,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.11,5.69,0.0,0.0
BA.5.5.3,BA.5.5.3,"nsp1:S135R,nsp4:V403F,RdRp:P323R,S:T76I,S:F486V","T670G,G9761T,C14408G,C21789T,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,M:Q19E,N:P13L,S:Q954H,S:P681H,N:S413R,M:D3N,S:G142D,S:T19I,S:V213G,S:T76I,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.6,"Omicron,B.1.1.529.5.6","nsp1:S135R,nsp13:A389V,S:F486V","T670G,C17402T,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:H655Y,M:D3N,S:N764K,E:T9I,S:N679K,S:P681H,M:Q19E,N:P13L,S:Q954H,S:N969K,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.91,2.74,3.06,5.39
BA.5.6.1,BA.5.6.1,"nsp1:S135R,nsp13:A389V,S:F486V,ORF10:Y14H","T670G,C17402T,T23018G,T29597C","nsp13:R392C,3CLpro:P132H,S:N969K,M:D3N,S:H655Y,E:T9I,S:N764K,S:D796Y,S:Q954H,S:N679K,S:P681H,M:Q19E,nsp3:D729D,N:P13L,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.6.2,BA.5.6.2,"nsp1:S135R,nsp13:A389V,S:K444T,S:F486V","T670G,C17402T,A22893C,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,E:T9I,S:N679K,S:P681H,S:N764K,N:P13L,N:S413R,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:K444T,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BA.5.8,"Omicron, B.1.1.529.5.8","nsp1:S135R,nsp3:M1278L,S:F486V,S:P1162L,N:E253E","T670G,A6551C,T23018G,C25047T,G29032A","3CLpro:P132H,nsp13:R392C,S:P1162L,S:D796Y,S:N969K,M:D3N,S:N764K,E:T9I,S:N679K,N:E253E,M:Q19E,N:P13L,S:Q954H,S:P681H,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.19,5.47,4.71,7.16
BA.5.9,"Omicron, B.1.1.529.5.9","nsp1:S135R,nsp2:H255H,S:R346I,S:F486V","T670G,T1570C,G22599T,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,S:N764K,E:T9I,S:P681H,N:P13L,S:H655Y,S:Q954H,S:N679K,N:S413R,M:D3N,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:R346I,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,3.33,5.93
BB.2,"Mu:B.1.621.1.2,B.1.621.1.2","nsp3:N1329D,S:T95I,S:N501Y,S:P681H,S:S939F,ORF3a:Q57H,ORF8:S67F","A6704G,C21846T,A23063T,C23604A,C24378T,G25563T,C28093T","S:T95I,S:T274T,S:P681H,S:S939F,S:D950N,nsp3:K1330R,N:T379I,N:D128D,ORF8:S67F,ORF3a:P258*,ORF3a:E261-,ORF3a:P262-,ORF3a:D265-,ORF3a:N257Q,ORF3a:V259-,ORF3a:M260-,ORF3a:Y264-,ORF3a:V256I,ORF3a:V259L,ORF3a:I263-,S:V143V,S:Y145N,S:Y144S","S:E484K,S:N501Y,S:R346K",VBM,,64.88,106.36,0.0,0.0
BC.1,"Omicron,B.1.1.529.1.1.1.1","nsp3:S1038S,nsp3:A1892T,nsp4:T492I,nsp6:I189V,RdRp:Q875R,S:R346K,S:T547K","C5833T,G8393A,C10029T,A11537G,A16064G,G22599A,C23202A","3CLpro:P132H,S:A67V,S:D796Y,S:N969K,S:L981F,M:D3G,M:Q19E,S:H655Y,S:N764K,E:T9I,S:P681H,S:Q954H,S:T95I,S:N679K,S:T547K,S:N856K,N:P13L,S:G142D","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:R346K,S:E484A,S:Q498R,S:G496S,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,26.61,44.98
BC.2,"Omicron,B.1.1.529.1.1.1.2","nsp3:A1892T,nsp4:T492I,nsp6:I189V,RdRp:Q875R,S:R346K,S:T547K","G8393A,C10029T,A11537G,A16064G,G22599A,C23202A","3CLpro:P132H,S:A67V,S:D796Y,M:D3G,S:N856K,S:N764K,S:T547K,S:L981F,E:T9I,S:T95I,S:N679K,S:P681H,S:N969K,M:Q19E,N:P13L,S:H655Y,S:Q954H,S:G142D","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:S371P,S:R346K,S:E484A,S:Q498R,S:G496S,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BD.1,"Omicron,B.1.1.529.1.17.2.1","nsp3:V1069I,nsp3:A1892T,nsp4:T492I,nsp6:I189V,S:T547K,S:Q628K,S:A701V","G5924A,G8393A,C10029T,A11537G,C23202A,C23444A,C23664T","3CLpro:P132H,S:A67V,S:D796Y,S:H655Y,S:L981F,M:Q19E,S:T547K,S:N856K,E:T9I,S:P681H,S:T95I,S:N679K,S:N969K,S:A701V,S:Q628K,M:D3G,N:P13L,S:Q954H,S:N764K,S:G142D,S:N211I","S:S477N,S:N501Y,S:S371F,S:G339D,S:T478K,S:S371P,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,30.48,55.6
BE.1,"Omicron,B.1.1.529.5.3.1.2","nsp2:Q376K,nsp13:M233I,N:E136D","C1931A,G16935A,G28681T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,S:H655Y,E:T9I,S:N679K,N:P13L,S:Q954H,S:P681H,M:Q19E,N:S413R,S:N764K,S:G142D,S:T19I,N:E136D,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.9,2.72,1.53,2.31
BE.1.1,"Omicron,B.1.1.529.5.3.1.1.1","nsp2:Q376K,nsp6:L260F,nsp13:M233I,N:E136D","C1931A,C11750T,G16935A,G28681T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,S:N764K,E:T9I,S:N679K,S:P681H,N:S413R,M:Q19E,N:P13L,S:H655Y,S:Q954H,S:G142D,S:T19I,N:E136D,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.01,5.08,3.16,5.46
BE.1.1.1,"Omicron,B.1.1.529.5.3.1.1.1.1","nsp2:Q376K,nsp6:L260F,nsp13:M233I,S:K444T,N:E136D","C1931A,C11750T,G16935A,A22893C,G28681T","3CLpro:P132H,nsp13:R392C,S:D796Y,M:Q19E,S:H655Y,S:N764K,E:T9I,S:P681H,N:P13L,S:N679K,S:N969K,N:S413R,M:D3N,S:Q954H,S:G142D,S:T19I,N:E136D,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:K444T,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BE.1.2,"Omicron,B.1.1.529.5.3.1.1.2","nsp2:R222R,nsp2:Q376K,nsp13:M233I,S:R346T,N:E136D","C1471T,C1931A,G16935A,G22599C,G28681T","3CLpro:P132H,nsp13:R392C,S:N969K,M:D3N,S:H655Y,S:N764K,E:T9I,S:N679K,S:D796Y,M:Q19E,N:P13L,S:P681H,N:S413R,S:Q954H,S:G142D,S:T19I,N:E136D,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:R346T,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BE.2,"Omicron,B.1.1.529.5.3.1.1","nsp1:S135R,nsp2:Q376K,nsp3:T64I,S:F486V,N:E136D","T670G,C1931A,C2910T,T23018G,G28681T","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,N:P13L,S:Q954H,S:N679K,S:P681H,N:S413R,M:Q19E,M:D3N,S:G142D,S:T19I,N:E136D,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.59,5.49,0.0,0.0
BE.3,"Omicron,B.1.1.529.5.3.1.3","nsp1:S135R,nsp2:Q376K,nsp13:Y324C,S:F486V,N:E136D,N:P151S","T670G,C1931A,A17207G,T23018G,G28681T,C28724T","3CLpro:P132H,nsp13:Y324C,nsp13:R392C,N:P151S,S:D796Y,E:T9I,S:N764K,M:Q19E,S:Q954H,S:N679K,S:P681H,S:N969K,N:S413R,N:P13L,M:D3N,S:H655Y,S:G142D,S:T19I,N:E136D,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:G339D,S:T478K,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,1.99,2.96,14.04,15.83
BF.1,"Omicron,B.1.1.529.5.2.1.1","nsp1:S135R,nsp2:L274L,S:F486V,M:D3N,M:T172T,N:G19G","T670G,C1627T,T23018G,G26529A,A27038G,A28330G","nsp13:R392C,3CLpro:P132H,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,M:Q19E,N:G19G,S:Q954H,S:P681H,N:S413R,M:D3N,N:P13L,M:T172T,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,4.72,6.48,3.5,6.3
BF.1.1,"Omicron,B.1.1.529.5.2.1.1.1","nsp1:E87D,nsp1:S135R,nsp2:L274L,S:F486V,M:D3N,M:T172T,N:G19G","G526T,T670G,C1627T,T23018G,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:H655Y,M:D3N,E:T9I,S:N679K,S:P681H,S:N764K,M:Q19E,N:G19G,S:N969K,M:T172T,N:S413R,N:P13L,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.10,"Omicron,B.1.1.529.5.2.1.10","nsp1:S135R,nsp2:L274L,nsp13:A368V,M:D3N,M:T172T,N:P13S,N:G19G","T670G,C1627T,C17339T,G26529A,A27038G,C28310T,A28330G","3CLpro:P132H,nsp13:R392C,S:N969K,M:D3N,M:Q19E,E:T9I,S:N679K,S:N764K,S:D796Y,N:P13L,S:Q954H,M:T172T,S:P681H,N:G19G,N:S413R,N:P13S,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.11,5.99,0.0,0.0
BF.11,"Omicron,B.1.1.529.5.2.1.11","nsp1:S135R,nsp2:L274L,S:R346T,S:F486V,ORF3a:S253S,M:D3N,M:T172T,N:G19G","T670G,C1627T,G22599C,T23018G,C26151T,G26529A,A27038G,A28330G","nsp13:R392C,3CLpro:P132H,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,S:P681H,N:P13L,M:T172T,N:G19G,N:S413R,M:D3N,M:Q19E,ORF3a:S253S,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:R346T,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.12,"Omicron,B.1.1.529.5.2.1.12","nsp1:S135R,nsp2:L274L,S:F486I,M:D3N,M:T172T,N:G19G","T670G,C1627T,T23018A,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,E:T9I,S:N679K,S:N764K,N:G19G,S:Q954H,S:P681H,S:N969K,N:S413R,M:T172T,M:Q19E,M:D3N,N:P13L,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486I,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.13,BF.13,"nsp1:S135R,nsp2:L274L,S:R346S,M:D3N,M:T172T,N:G19G","T670G,C1627T,A22600T,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,M:D3N,S:D839D,E:T9I,N:G19G,N:P13L,S:Q954H,M:T172T,S:N679K,S:P681H,S:N969K,nsp3:K1771R,N:S413R,M:Q19E,ORF3a:T268T,S:H655Y,S:N764K,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:R346S,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.14,BF.14,"nsp1:S135R,nsp2:L274L,nsp13:H164Y,S:N450D,M:D3N,M:T172T,N:G19G","T670G,C1627T,C16726T,A22910G,G26529A,A27038G,A28330G","nsp13:H164Y,nsp13:R392C,3CLpro:P132H,S:D796Y,M:D3N,E:T9I,S:N764K,N:G19G,S:Q954H,M:T172T,S:N679K,S:P681H,S:N969K,N:S413R,N:P13L,M:Q19E,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:N450D,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.15,Omicron,"nsp1:S135R,nsp2:L274L,S:Y248H,M:D3N,M:T172T,ORF6:P57L,N:G19G","T670G,C1627T,T22304C,G26529A,A27038G,C27371T,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,S:Y248H,S:N764K,E:T9I,S:P681H,M:Q19E,N:P13L,S:Q954H,M:T172T,S:N679K,N:G19G,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.16,Omicron,"nsp1:S135R,nsp2:L274L,nsp6:L69L,S:K444R,M:D3N,M:T172T,N:G19G","T670G,C1627T,T11177C,A22893G,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:H655Y,E:T9I,N:G19G,N:P13L,S:Q954H,M:T172T,S:N679K,S:P681H,S:N969K,N:S413R,M:D3N,M:Q19E,S:N764K,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:K444R,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.2,"Omicron,B.1.1.529.5.2.1.2","nsp1:S135R,nsp2:L274L,RdRp:V319L,S:F486V,M:D3N,M:T172T,N:G19G","T670G,C1627T,G14398T,T23018G,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,M:D3N,M:Q19E,S:N764K,E:T9I,S:P681H,N:A397V,N:P13L,N:G19G,S:H655Y,S:Q954H,S:N679K,N:S413R,M:T172T,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,5.95,9.91
BF.22,Omicron,"nsp1:S135R,nsp2:L274L,M:D3N,M:T172T,N:G19G,N:T49I,N:T379I","T670G,C1627T,G26529A,A27038G,A28330G,C28419T,C29409T","3CLpro:P132H,nsp13:R392C,N:T379I,S:D796Y,S:N969K,M:D3N,E:T9I,S:N764K,N:T49I,S:Q954H,S:N679K,S:P681H,M:T172T,N:S413R,S:I569I,M:Q19E,N:P13L,N:G19G,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.3,"Omicron,B.1.1.529.5.2.1.3","nsp1:S135R,nsp2:L274L,S:F486V,S:T547I,S:A1020S,M:D3N,M:T172T,N:G19G","T670G,C1627T,T23018G,C23202T,G24620T,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:A1020S,S:N969K,M:Q19E,S:T547I,S:H655Y,S:N764K,E:T9I,N:G19G,S:Q954H,M:T172T,S:N679K,S:P681H,N:S413R,M:D3N,N:P13L,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.3.1,"Omicron,B.1.1.529.5.2.1.3.1","nsp1:S135R,nsp2:L274L,S:G446S,S:F486V,S:T547I,S:A1020S,M:D3N,M:T172T,ORF7a:N52N,N:G19G","T670G,C1627T,G22898A,T23018G,C23202T,G24620T,G26529A,A27038G,C27549T,A28330G","nsp13:R392C,3CLpro:P132H,S:D796Y,S:A1020S,S:H655Y,S:N969K,M:D3N,S:T547I,S:N764K,E:T9I,S:N679K,S:P681H,M:T172T,M:Q19E,N:S413R,N:P13L,N:G19G,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:T478K,S:G339D,S:G446S,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.4,Omicron,"nsp1:S135R,nsp2:L274L,S:T259A,S:F486V,M:D3N,M:T172T,N:G19G","T670G,C1627T,A22337G,T23018G,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:N969K,S:N764K,E:T9I,S:D796Y,M:Q19E,N:P13L,S:Q954H,M:T172T,S:N679K,S:P681H,N:S413R,M:D3N,N:G19G,S:H655Y,S:G142D,S:T19I,S:T259A,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.04,5.23,0.0,0.0
BF.5,"Omicron,B.1.1.529.5.2.1.5","nsp1:S135R,nsp2:L274L,S:F486V,S:A1020S,M:D3N,M:T172T,N:G19G","T670G,C1627T,T23018G,G24620T,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:A1020S,S:N969K,M:D3N,S:N764K,E:T9I,S:N679K,S:P681H,N:G19G,M:T172T,N:S413R,M:Q19E,N:P13L,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.05,5.99,1.97,2.68
BF.6,Omicron,"nsp1:S135R,nsp2:L274L,S:G181A,S:F486V,M:D3N,M:T172T,N:G19G","T670G,C1627T,G22104C,T23018G,G26529A,A27038G,A28330G","3CLpro:P132H,nsp13:R392C,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,S:P681H,N:P13L,N:G19G,N:S413R,M:T172T,M:D3N,M:Q19E,S:Q954H,S:G142D,S:T19I,S:V213G,S:G181A,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.7,"Omicron,B.1.1.529.5.2.1.7","nsp1:S135R,nsp2:L274L,S:R346T,S:F486V,M:D3N,M:T172T,N:G19G,N:S33C,N:S33I","T670G,C1627T,G22599C,T23018G,G26529A,A27038G,A28330G,A28370T,G28371T","3CLpro:P132H,nsp13:R392C,S:D796Y,M:D3N,S:N764K,E:T9I,S:P681H,M:Q19E,N:G19G,S:H655Y,S:N679K,S:N969K,M:T172T,N:S413R,N:S33I,N:P13L,N:S33C,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:R346T,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BF.8,"Omicron,B.1.1.529.5.2.1.8","nsp1:S135R,nsp2:L274L,M:D3N,M:T172T,N:G19G,N:T362K","T670G,C1627T,G26529A,A27038G,A28330G,C29358A","3CLpro:P132H,nsp13:R392C,N:T362K,S:D796Y,S:H655Y,S:N969K,M:D3N,S:N764K,E:T9I,S:N679K,S:P681H,N:G19G,S:Q954H,N:P13L,N:S413R,M:T172T,M:Q19E,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.56,6.27,0.0,0.0
BF.9,BF.9,"nsp1:S135R,nsp2:L274L,nsp6:Q27H,nsp13:A208V,M:D3N,M:T172T,N:G19G","T670G,C1627T,G11053C,C16859T,G26529A,A27038G,A28330G","nsp13:R392C,3CLpro:P132H,N:N126N,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,S:P681H,M:Q19E,N:P13L,N:G19G,M:T172T,N:S413R,M:D3N,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.08,6.52,1.64,2.48
BG.1,"Omicron, ","nsp1:S135R,nsp3:N1247D,nsp13:R392C,S:V213G,S:S704L,ORF3a:F8F","T670G,A6458G,C17410T,T22200G,C23673T,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,M:Q19E,E:T9I,S:N679K,S:N764K,S:D796Y,N:P13L,S:Q954H,S:S704L,S:N969K,N:S413R,S:H655Y,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BG.2,"Omicron,  B.1.1.529.2.12.1.2","nsp1:S135R,RdRp:D523D,nsp13:R392C,S:V213G,S:L452Q,S:S704L,S:V1264L,ORF8:Q18*,N:T282I","T670G,T15009C,C17410T,T22200G,T22917A,C23673T,G25352T,C27945T,C29118T","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:V1264L,S:N969K,S:D53D,S:N764K,E:T9I,S:N679K,M:Q19E,N:P13L,N:T282I,S:Q954H,N:S413R,S:S704L,ORF8:Q18*,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452Q,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,8.87,9.66,0.0,0.0
BG.3,"Omicron,  B.1.1.529.2.12.1.3","nsp1:S135R,nsp4:T204A,nsp13:R392C,S:V213G,S:L452Q,S:S704L,ORF3a:F8F","T670G,A9164G,C17410T,T22200G,T22917A,C23673T,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,E:T9I,S:N679K,S:N764K,M:Q19E,S:Q954H,S:S704L,N:S413R,N:P13L,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:L452Q,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BG.4,"Omicron,  B.1.1.529.2.12.1.4","nsp1:S135R,nsp3:I1460T,nsp13:R392C,S:V213G,S:L452Q,S:S704L,ORF3a:F8F,N:P162L","T670G,T7098C,C17410T,T22200G,T22917A,C23673T,C25416T,C28758T","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,N:P162L,M:Q19E,N:P13L,S:Q954H,N:H145H,N:S413R,S:S704L,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452Q,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BG.5,"Omicron,  B.1.1.529.2.12.1.5,BA.2.12.1.5","nsp1:S135R,nsp8:D30G,nsp13:R392C,S:V213G,S:L452Q,S:S704L,ORF3a:F8F","T670G,A12180G,C17410T,T22200G,T22917A,C23673T,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:D53D,S:N764K,E:T9I,M:Q19E,S:S704L,S:N679K,N:S413R,N:P13L,N:N8N,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452Q,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,5.92,10.01,0.0,0.0
BG.6,"Omicron,  B.1.1.529.2.12.1.6","nsp1:S135R,GFL:V13I,nsp13:R392C,S:V213G,S:L452Q,S:S704L,S:E1202Q,ORF3a:F8F","T670G,G13061A,C17410T,T22200G,T22917A,C23673T,G25166C,C25416T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:E1202Q,M:Q19E,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,S:N969K,N:S413R,S:S704L,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452Q,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,,,,
BH.1,"Omicron,20L,B.1.1.529.2.38.3.1","nsp1:S135R,nsp3:F396I,nsp13:R392C,S:S71F,S:V213G,S:K417T,ORF3a:F8F","T670G,T3905A,C17410T,C21774T,T22200G,A22812C,C25416T","3CLpro:A94G,nsp13:R392C,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,S:T20T,M:Q19E,N:P13L,N:S413R,S:Q954H,S:G142D,S:T19I,S:S71F,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478R,S:S371F,S:G446S,S:E484A,S:L452Q,S:Q498R,S:D405N,S:R408S,S:K417T,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BK.1,Omicron,"nsp1:S135R,nsp2:G339S,nsp6:K270R,S:F486V,ORF10:L37F","T670G,G1820A,A11781G,T23018G,C29666T","3CLpro:P132H,nsp13:R392C,E:T9I,S:P681H,S:N764K,S:D796Y,M:Q19E,N:D63D,S:N679K,S:N969K,N:S413R,M:D3N,N:P13L,S:H655Y,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,3.83,4.88,0.0,0.0
BL.1,Omicron,"nsp1:S135R,nsp13:R392C,S:K147E,S:W152R,S:V213G,S:R346T,S:D574V","T670G,C17410T,A22001G,T22016C,T22200G,G22599C,A23283T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:I210V,S:N969K,E:T9I,S:D796Y,S:Q954H,S:N679K,S:D574V,N:S413R,N:P13L,S:H655Y,M:Q19E,S:N764K,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:G446S,S:R346T,S:E484A,S:N460K,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BL.3,BL.3,"nsp1:S135R,nsp3:P1867S,nsp13:R392C,S:K147E,S:W152R,S:V213G,S:D574V","T670G,C8318T,C17410T,A22001G,T22016C,T22200G,A23283T","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:I210V,S:D574V,S:N969K,E:T9I,S:N679K,S:N764K,S:D796Y,N:P13L,N:S413R,M:Q19E,S:H655Y,S:Q954H,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:S371F,S:G339D,S:T478K,S:G446S,S:E484A,S:N460K,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BM.1,Omicron,"nsp1:S135R,nsp3:Q380K,nsp13:R392C,S:K147E,S:W152R,S:V213G","T670G,C3857A,C17410T,A22001G,T22016C,T22200G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:I210V,S:H655Y,S:N764K,E:T9I,S:N679K,S:Q954H,S:N969K,N:S413R,M:Q19E,N:P13L,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:G446S,S:E484A,S:N460K,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
BR.1,BR.1,"nsp1:S135R,nsp13:R392C,S:K147E,S:W152R,S:V213G,S:K444M,S:L452R","T670G,C17410T,A22001G,T22016C,T22200G,A22893T,T22917G","3CLpro:P132H,nsp13:R392C,3CLpro:R131R,RdRp:L758L,S:D796Y,S:I210V,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,N:S413R,M:Q19E,N:P13L,S:Q954H,S:G142D,S:G257S,S:T19I,S:V213G,S:F157L,S:W152R,S:K147E,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:G446S,S:E484A,S:L452R,S:N460K,S:Q498R,S:D405N,S:K444M,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
C.1,B.1.1.1.1,"nsp3:T428I,3CLpro:G15S,N:Q384H","C4002T,G10097A,G29425T","3CLpro:G15S,N:Q384H,nsp3:T428I",,,,,,,
C.1.2,C.1.2,"nsp3:T428I,3CLpro:G15S,S:R190S,N:Q384H","C4002T,G10097A,G22132T,G29425T","S:A243-,S:R190S,3CLpro:G15S,S:T859N,S:H655Y,S:T716I,S:N679K,N:Q384H,N:P13L,S:C136F,nsp3:T428I,ORF3a:V255-,S:D215G,S:L244-,S:Y144-","S:E484K,S:N501Y,S:Y449H",,,,,,
C.36,C.36,"nsp3:T428I,3CLpro:G15S,nsp8:T148I,S:Q677H,N:G212V","C4002T,G10097A,C12534T,G23593T,G28908T","3CLpro:G15S,S:Q677H,N:G212V,nsp3:T428I",,,,,,,
C.36.3,C.36.3,"nsp3:D821N,nsp6:L122S,S:S12F,S:Q677H,N:R203K","G5180A,T11337C,C21597T,G23593T,G28881A","nsp13:D105Y,3CLpro:G15S,S:Q677H,S:S12F,N:G212V,nsp3:T428I,S:W152R","S:R346S,S:L452R",,,,,,
C.36.3.1,C.36.3.1,"nsp3:D821N,nsp6:L122S,S:S477N,S:Q677H,N:R203K","G5180A,T11337C,G22992A,G23593T,G28881A","nsp13:D105Y,nsp13:P529L,3CLpro:G15S,S:Q677H,S:S12F,nsp3:T428I,S:W152R","S:S477N,S:R346S,S:L452R",,,,,,
C.37,"Lambda,B.1.1.1.37","nsp3:F1569V,S:G75V,S:T76I,S:L452Q,S:F490S,S:T859N,N:P13L","T7424G,G21786T,C21789T,T22917A,T23031C,C24138A,C28311T","3CLpro:G15S,N:G214C,S:T859N,N:P13L,nsp3:T428I,S:G75V,S:T76I,S:D253N","S:F490S,S:L452Q",,,,,,
N.10,N.10,"ORF6:I33T,N:R203K,N:R203R,N:G204R,N:I292T","T27299C,G28881A,G28882A,G28883C,T29148C","3CLpro:P132S,3CLpro:P108S,S:I210V,N:I292T,N:Q70R","S:E484K,S:V445A",,,,,,
P.1,"501Y.V3,B.1.1.248,B.1.1.28,20J/501Y.V3,VOC-202101/02,GR/501Y.V3,20J/S:501Y.V3,Gamma","nsp3:K977Q,S:T20N,S:R190S,S:E484K,S:N501Y,N:R203K","A5648C,C21621A,G22132T,G23012A,A23063T,G28881A","N:P80R,S:R190S,S:V1176F,S:P26S,S:H655Y,S:D138Y,S:T1027I,S:L18F,ORF3a:S253P,S:T20N","S:E484K,S:N501Y,S:K417T",VBM,https://opendata.ncats.nih.gov/variant/datasets?query=P.1,45.22,90.46,17.39,26.96
P.1.1,P.1.1,"nsp3:K977Q,S:T20N,S:R190S,S:E484K,S:N501Y","A5648C,C21621A,G22132T,G23012A,A23063T","N:P80R,S:R190S,S:V1176F,S:P26S,S:L18F,S:D138Y,S:T1027I,S:H655Y,ORF3a:S253P,S:T20N","S:E484K,S:N501Y,S:K417T",VBM,,45.09,90.28,14.51,30.66
P.1.2,P.1.2,"nsp3:K977Q,nsp3:T1002I,S:T20N,S:R190S,S:E484K,S:N501Y,N:R203K","A5648C,C5724T,C21621A,G22132T,G23012A,A23063T,G28881A","N:P80R,S:R190S,S:H655Y,S:V1176F,S:P26S,S:L18F,S:D138Y,S:T1027I,ORF3a:S253P,S:T20N","S:E484K,S:N501Y,S:K417T",VBM,,0.0,0.0,50.09,103.11
P.2,"20B/S:484K,GR,Zeta","3CLpro:L205V,nsp7:L71F,S:E484K,S:V1176F,N:A119S","T10667G,C12053T,G23012A,G25088T,G28628T","S:V1176F,N:A119S",S:E484K,VBM,https://opendata.ncats.nih.gov/variant/datasets?query=P.2,52.09,113.38,28.84,54.82
P.3,"B.1.1.28.3,VUI-21MAR-02,Theta,GR,20B/S:265C","nsp4:L438P,nsp13:A368V,S:H1101Y,S:V1176F","T9867C,C17339T,C24863T,G25088T","S:V1176F,S:E1092K,S:H1101Y,S:P681H,nsp3:D736G","S:E484K,S:N501Y",,,,,,
P.5,B.1.1.28.5,"nsp4:A446V,nsp6:Q160K,S:N501T","C9891T,C11450A,A23064C","S:T95I,N:G215V,S:Q14K","S:N501T,S:E484Q",,,,,,
Q.1,ALPHA,"nsp3:T183I,nsp3:A890D,nsp3:I1412T,S:N501Y,S:A570D,S:P681H,S:T716I,S:S982A,S:D1118H,ORF8:Q27*,ORF8:R52I,ORF8:Y73C,N:S235F","C3267T,C5388A,T6954C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,C28977T","S:A570D,S:D1118H,S:T716I,N:S235F,S:P681H,S:S982A,ORF8:Y73C,ORF8:Q27*",S:N501Y,VBM,,16.4,34.63,15.42,32.8
Q.2,ALPHA,"nsp3:T183I,nsp3:A890D,nsp3:I1412T,S:N501Y,S:A570D,S:P681H,S:T716I,S:S982A,S:D1118H,ORF8:Q27*,ORF8:R52I,ORF8:Y73C,ORF8:H112Y,N:S235F","C3267T,C5388A,T6954C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,C28227T,C28977T","S:A570D,S:S982A,S:D1118H,S:P681H,S:T716I,N:S235F,ORF8:Q27*,ORF8:Y73C",S:N501Y,VBM,,0.0,0.0,37.21,87.49
Q.4,ALPHA,"nsp3:T183I,nsp3:A890D,nsp3:I1412T,nsp8:Q24R,nsp13:K460R,S:N501Y,S:A570D,S:P681R,S:T716I,S:S982A,S:D1118H,ORF8:Q27*,ORF8:R52I,ORF8:Y73C,N:S235F","C3267T,C5388A,T6954C,A12162G,A17615G,A23063T,C23271A,C23604G,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,C28977T","S:S982A,S:T716I,N:S235F,S:D1118H,S:A570D,S:P681R,ORF8:Y73C,ORF8:Q27*",S:N501Y,VBM,,15.18,31.85,58.65,119.39
Q.5,ALPHA,"nsp2:L550F,nsp3:T183I,S:N501Y,S:A570D,S:P681H,S:T716I,S:S982A,S:D1118H,ORF8:Y73C,N:S235F","C2453T,C3267T,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,A28111G,C28977T","S:D138H,S:D1118H,S:P681H,N:S235F,N:Q281K,S:T716I,S:S982A,S:A570D,ORF8:Y73C,N:T135I","S:F490S,S:N501Y",VBM,,42.34,100.64,15.53,32.91
Q.6,ALPHA,"nsp3:T183I,S:N501Y,S:A570D,S:P681H,S:T716I,S:S982A,S:D1118H,ORF8:Q27*,ORF8:Y73C,N:S235F,N:H300Y","C3267T,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,A28111G,C28977T,C29171T","S:S982A,S:A570D,S:D1118H,S:T716I,N:S235F,N:H300Y,S:P681H,ORF8:Y73C,ORF8:Q27*",S:N501Y,VBM,,79.48,216.06,101.65,151.27
Q.7,ALPHA,"nsp3:T183I,nsp3:E1450D,S:N501Y,S:A570D,S:P681H,S:T716I,S:S982A,S:D1118H,ORF8:Q27*,ORF8:Y73C,N:S235F,nsp3:T183I,nsp3:E1450D,S:N501Y,S:A570D,S:P681H,S:T716I,S:S982A,S:D1118H,ORF8:Q27*,ORF8:Y73C,N:S235F","C3267T,A7069C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,A28111G,C28977T,C3267T,A7069T,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,A28111G,C28977T","S:A570D,S:S982A,S:D1118H,S:T716I,N:S235F,S:P681H,ORF8:Y73C,ORF8:K68*,ORF8:Q27*",S:N501Y,VBM,,0.0,0.0,0.0,0.0
R.2,B.1.1.316.2,"nsp3:A231V,nsp8:D143G,S:E484K,S:Q677H,S:T732S","C3411T,A12519G,G23012A,G23593C,A23756T","S:T732S,S:E1202Q,S:Q677H",S:E484K,,,,,,
XAA,XAA,"nsp2:N269D,nsp3:K38R,nsp3:A889A,nsp4:L264F,nsp4:V290V,ORF3a:T223I","A1610G,A2832G,T5386G,C9344T,A9424G,C26060T","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,E:T9I,S:P681H,S:N764K,S:H655Y,S:Q954H,S:N679K,M:Q19E,N:P13L,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAB,XAB,"nsp2:A555A,nsp3:K38R,nsp3:A889A,nsp4:L264F,nsp4:V290V,nsp13:I258I,S:I410I,ORF3a:T223I","C2470T,A2832G,T5386G,C9344T,A9424G,C17010T,C22792T,C26060T","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:N969K,S:H655Y,S:N764K,E:T9I,M:Q19E,N:P13L,S:Q954H,S:N679K,S:P681H,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F",VOC,,0.0,0.0,0.0,0.0
XAC,XAC,"nsp1:S135R,nsp4:A146V,nsp4:L264F,nsp4:V290V,nsp4:T492I,RdRp:D760D,nsp13:R392C,S:V213G,S:T376A,ORF3a:Y113Y,ORF3a:L140F,M:D3G","T670G,C8991T,C9344T,A9424G,C10029T,C15720T,C17410T,T22200G,A22688G,C25731T,C25810T,A26530G","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,RdRp:D760D,E:T9I,S:P681H,S:N764K,S:D796Y,S:Q954H,S:N679K,N:S413R,N:P13L,M:Q19E,M:D3G,S:H655Y,ORF6:R20R,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:D405N,S:R408S,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAD,XAD,"nsp2:T149A,ORF3a:T223I,E:T9I,M:D3G,N:S202C,N:S202T","A1250G,C26060T,C26270T,A26530G,A28877T,G28878C","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:Q954H,S:N679K,S:P681H,M:D3G,N:P13L,M:Q19E,ORF6:R20R,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAE,XAE,"nsp3:E1224A,nsp6:R93C,S:D1146D,ORF3a:T64T,N:S202C,N:S202T","A6390C,C11249T,C25000T,C25584T,A28877T,G28878C","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:D3G,S:H655Y,E:T9I,S:N679K,S:P681H,S:N764K,N:P13L,M:Q19E,S:Q954H,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAG,XAG,"nsp3:L46L,nsp3:L956I,nsp4:L264F,nsp8:A81A,nsp13:F422F","C2857T,C5585A,C9344T,A12334G,C17502T","3CLpro:P132H,nsp13:R392C,nsp13:F422F,S:A27S,S:D1146D,3CLpro:R131R,S:I410I,RdRp:L758L,S:H655Y,S:N969K,S:N764K,E:T9I,S:N679K,S:D796Y,S:Q954H,S:P681H,M:Q19E,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAH,XAH,"nsp13:A336S,S:I1114I,M:A63T,ORF6:R20R","G17242T,C24904T,G26709A,A27259C","nsp13:R392C,3CLpro:P132H,S:D1146D,3CLpro:R131R,RdRp:L758L,S:H655Y,S:N969K,M:D3G,S:N764K,E:T9I,S:N679K,S:P681H,S:I1114I,S:D796Y,M:Q19E,S:Q954H,N:P13L,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,,,,
XAJ,Omicron,"RdRp:D523D,S:L452R,S:N658S,S:S704L","T15009C,T22917G,A23535G,C23673T","3CLpro:P132H,nsp13:R392C,S:D1163V,S:D1146D,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N658S,S:N969K,S:H655Y,S:N764K,E:T9I,S:Q954H,S:S704L,S:N679K,S:P681H,S:D614G,M:Q19E,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAK,Omicron,"nsp3:D736D,nsp3:A889A,nsp7:N69N,RdRp:N600N,S:R346K,S:H1101Y,ORF7a:G38G","C4927T,T5386G,C12049T,C15240T,G22599A,C24863T,A27507G","3CLpro:P132H,S:D1146D,3CLpro:R131R,S:H655Y,S:N764K,S:H1101Y,E:T9I,S:N679K,S:D796Y,N:P13L,S:Q954H,S:P681H,S:N969K,S:D614G,M:Q19E,nsp3:D736D,N:S413R,ORF6:R20R,S:G142D,S:V213G,S:K147E,S:T376A","S:K417N,S:S371F,S:G339D,S:R346K,S:D405N,S:R408S,S:S373P,S:S375F",VOC,,0.0,0.0,0.0,0.0
XAL,XAL,"nsp3:E49G,RdRp:N600N,nsp15:T112I,S:L8F","A2865G,C15240T,C19955T,G21586T","3CLpro:P132H,S:D1146D,S:D796Y,S:N969K,M:Q19E,E:T9I,S:Y674*,S:N679K,N:P13L,S:P681H,N:S413R,S:D614G,S:H655Y,S:Q954H,ORF6:R20R,S:G142D,S:T19I,S:V213G","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K,S:Y369C",VOC,,0.0,0.0,0.0,0.0
XAM,XAM,"nsp3:T509T,nsp3:A889A,nsp13:R392C,S:I410I,ORF3a:H78Y","C4246T,T5386G,C17410T,C22792T,C25624T","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:D614G,S:H655Y,S:N764K,E:T9I,S:N679K,N:P13L,S:Q957Q,S:P681H,S:N969K,M:Q19E,N:S413R,S:Q954H,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAP,XAP,"nsp1:S135R,nsp3:I896I,nsp13:R392C,S:V213G,M:D3G","T670G,C5407A,C17410T,T22200G,A26530G","nsp13:R392C,3CLpro:P132H,S:D1146D,3CLpro:R131R,RdRp:L758L,S:D614G,S:H655Y,S:N969K,M:D3G,S:N764K,E:T9I,S:N679K,S:P681H,S:D796Y,M:Q19E,S:Q954H,N:P13L,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAQ,XAQ,"nsp3:L623L,nsp3:A1892T,nsp4:L435L,nsp7:T81T,RdRp:N600N,nsp15:T112I,S:V213G","C4586T,G8393A,C9857T,C12085T,C15240T,C19955T,T22200G","3CLpro:P132H,S:D1146D,S:D796Y,S:D614G,S:T739T,E:T9I,S:N764K,N:P13L,S:Q954H,S:N679K,S:P681H,S:N969K,S:H655Y,N:S413R,M:Q19E,ORF6:R20R,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:S371F,S:T478K,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAS,Omicron,"nsp1:S135R,S:F486V,M:F112F,ORF8:Q18*,N:P151S","T670G,T23018G,C26858T,C27945T,C28724T","nsp13:R392C,3CLpro:P132H,S:D1146D,N:P151S,3CLpro:R131R,RdRp:L758L,S:H655Y,S:N764K,E:T9I,S:D796Y,S:Q954H,S:N679K,S:P681H,S:N969K,S:D614G,N:S413R,N:P13L,M:Q19E,ORF8:Q18*,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAT,XAT,"nsp1:S135R,nsp4:A146V,3CLpro:L75F,nsp13:R392C,S:L5F,S:V213G,ORF3a:L140F,N:Q408L","T670G,C8991T,C10277T,C17410T,C21575T,T22200G,C25810T,A29496T","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,3CLpro:L75F,RdRp:L758L,S:D796Y,S:N969K,E:T9I,S:N679K,S:N764K,N:Q408L,N:P13L,S:P681L,M:Q19E,M:D3G,S:H655Y,S:Q954H,ORF6:R20R,S:T19I,S:L5F,S:T323I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:G339D,S:T478K,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAU,Omicron,"nsp2:A555A,nsp3:K38R,nsp13:L391L,S:Q957Q,ORF3a:H78Y,N:S413R","C2470T,A2832G,T17407C,A24433G,C25624T,A29510C","3CLpro:P132H,nsp13:L391L,nsp13:R392C,S:D1146D,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:D614G,S:H655Y,S:N764K,E:T9I,S:N679K,S:P681H,S:Q957Q,S:N969K,N:S413R,N:P13L,M:Q19E,S:Q954H,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAV,Omicron,"nsp1:S135R,nsp3:S1296F,RdRp:A840A,nsp13:V348L,nsp13:R392C,S:V213G,ORF7a:C15C","T670G,C6606T,C15960T,G17278T,C17410T,T22200G,T27438C","nsp13:R392C,3CLpro:P132H,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,M:D3N,S:H655Y,S:N764K,E:T9I,S:P681H,M:Q19E,N:P13L,S:Q954H,S:N679K,N:S413R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XAZ,XAZ,"nsp1:S135R,nsp2:A476V,nsp3:P200S,nsp3:Y213Y,S:F486V","T670G,C2232T,C3317T,T3358C,T23018G","3CLpro:P132H,nsp13:R392C,S:D796Y,M:Q19E,S:H655Y,E:T9I,S:N679K,S:P681H,S:N764K,S:N969K,N:P13L,N:S413R,M:D3N,S:Q954H,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:L452R,S:Q498R,S:D405N,S:R408S,S:S373P,S:F486V,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,4.34,5.92
XD,XD,"nsp2:E172D,nsp3:A488S,nsp4:I57V,S:G339D,ORF3a:D155Y","A1321C,G4181T,A8723G,G22578A,G25855T","S:A27S,S:D796Y,S:T95I,S:T547K,S:L981F,N:D377Y,S:Q954H,N:D63G,S:N969K,S:N856K,S:H655Y,S:N764K,S:G142D","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371P,S:G339D,S:S371F,S:G446S,S:E484A,S:Q498R,S:Y505H,S:N440K",VOC,,0.0,0.0,0.0,0.0
XE,XE,"nsp3:K38R,nsp3:A889A,nsp3:V1069I,nsp3:A1892T,RdRp:L386L,nsp13:R392C,S:V213G","A2832G,T5386G,G5924A,G8393A,C14599T,C17410T,T22200G","3CLpro:P132H,nsp13:R392C,S:D1146D,RdRp:L758L,M:Q19E,S:H655Y,E:T9I,S:D796Y,S:Q954H,S:N679K,S:P681H,S:N969K,N:S413R,N:P13L,S:N764K,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,11.49,16.47,0.0,0.0
XF,XF,"nsp2:N195N,nsp3:A488S,nsp4:T492I,nsp6:I189V,S:T478K,S:T547K,S:P681H","T1390C,G4181T,C10029T,A11537G,C22995A,C23202A,C23604A","3CLpro:P132H,S:A67V,S:D1146D,S:D796Y,S:N969K,S:L981F,M:D3G,S:N856K,S:N764K,S:T95I,E:T9I,S:N679K,S:T547K,S:Q954H,S:P681H,M:Q19E,N:P13L,S:H655Y","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:S371P,S:G446S,S:E484A,S:Q498R,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XG,XG,"nsp3:K38R,nsp3:A889A,nsp3:P985S,nsp13:R392C,S:I410I","A2832G,T5386G,C5672T,C17410T,C22792T","nsp13:R392C,3CLpro:P132H,S:D1146D,3CLpro:R131R,S:I410I,RdRp:L758L,S:D796Y,S:H655Y,S:N969K,S:N764K,E:T9I,S:Q954H,S:N679K,S:P681H,M:Q19E,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,10.1,17.41
XH,XH,"nsp2:C33R,nsp2:C33*,nsp3:K38R,nsp3:A889A,3CLpro:P132H,nsp13:R392C","T902C,C904A,A2832G,T5386G,C10449A,C17410T","3CLpro:P132H,nsp13:R392C,S:D1146D,S:I410I,RdRp:L758L,S:N969K,S:H655Y,S:N764K,E:T9I,S:N679K,S:P681H,S:D796Y,N:P13L,S:Q954H,N:S413R,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:S371F,S:G339D,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,10.16,21.36
XL,XL,"nsp2:L24F,nsp3:D174D,nsp4:S218S,RdRp:K263K","C875T,C3241T,T9208C,G14229A","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,RdRp:L758L,S:D796Y,M:Q19E,E:T9I,S:P681H,S:N764K,N:P13L,S:Q954H,S:N679K,S:N969K,S:H655Y,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XN,XN,"nsp3:K38R,nsp3:G489S,nsp3:A534A,nsp4:L438F,nsp6:R5K","A2832G,G4184A,C4321T,C9866T,G10986A","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,S:I410I,RdRp:L758L,S:N969K,S:H655Y,E:T9I,S:D796Y,S:Q954H,S:N679K,S:P681H,N:P13L,M:Q19E,S:N764K,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XP,XP,"nsp2:A555A,nsp3:K38R,S:A876A,N:S413R","C2470T,A2832G,A24190C,A29510C","3CLpro:P132H,S:A67V,S:D1146D,S:D796Y,S:N969K,S:L981F,M:Q19E,S:N856K,S:H655Y,S:N764K,S:T95I,E:T9I,S:N679K,S:T547K,S:Q954H,S:P681H,N:S413R,M:D3G,N:P13L,ORF6:R20R","S:K417N,S:S477N,S:N501Y,S:S371P,S:G339D,S:S371F,S:T478K,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XQ,XQ,"nsp2:A555A,nsp3:K38R,nsp4:L264F,nsp13:K460R,M:F112F","C2470T,A2832G,C9344T,A17615G,C26858T","nsp13:R392C,3CLpro:P132H,S:D1146D,3CLpro:R131R,RdRp:L758L,S:N969K,S:N764K,E:T9I,S:P681H,S:D796Y,S:N679K,N:T49P,M:Q19E,N:P13L,S:H655Y,S:Q954H,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XS,XS,"nsp3:Y882Y,nsp3:P1159P,S:V11V,S:E484A","C5365T,C6196T,C21595T,A23013C","3CLpro:P132H,S:A67V,S:D1146D,S:D796Y,S:N969K,S:L981F,S:H655Y,E:T9I,S:N679K,S:P681H,S:N764K,S:T547K,S:Q954H,S:T95I,S:N856K,M:D3G,M:Q19E,N:P13L,ORF6:R20R","S:S477N,S:N501Y,S:T478K,S:G339D,S:S371P,S:S371F,S:G446S,S:R346K,S:E484A,S:Q498R,S:G496S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XV,XV,"nsp3:K38R,nsp3:S288S,GFL:V57V,RdRp:L758L,nsp15:T112I,S:R408S,ORF3a:T223I","A2832G,C3583T,T13195C,C15714T,C19955T,A22786C,C26060T","3CLpro:P132H,nsp13:R392C,S:D1146D,S:I410I,RdRp:L758L,S:N764K,E:T9I,S:P681H,S:D796Y,S:Q954H,S:N679K,S:N969K,N:S413R,N:P13L,S:H655Y,ORF6:R20R,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XW,XW,"nsp3:K38R,nsp3:G489S,3CLpro:N151N,nsp9:T24I,RdRp:V860V","A2832G,G4184A,C10507T,C12756T,G16020T","nsp13:R392C,3CLpro:P132H,S:D1146D,3CLpro:R131R,RdRp:L758L,S:D796Y,S:N969K,S:N764K,E:T9I,S:N679N,S:Q954H,S:P681H,N:S413R,M:Q19E,N:P13L,S:H655Y,ORF6:R20R,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0
XY,XY,"nsp2:A555A,nsp3:A1892T,nsp6:I189V,nsp9:I65I,S:V213G,S:A263A,S:I410I,N:D3G","C2470T,G8393A,A11537G,C12880T,T22200G,A22351G,C22792T,A28281G","3CLpro:P132H,nsp13:R392C,S:A263A,S:D1146D,S:I410I,N:D3G,RdRp:L758L,S:D796Y,S:N969K,E:T9I,S:N764K,S:Q954H,S:N679K,S:P681H,N:S413R,M:Q19E,N:P13L,S:H655Y,ORF6:R20R,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:N501Y,S:T478K,S:G339D,S:S371F,S:E484A,S:Q498R,S:D405N,S:R408S,S:S373P,S:Q493R,S:Y505H,S:S375F,S:N440K",VOC,,,,,
XZ,XZ,"nsp3:G489S,nsp9:I65I,nsp15:E260K,S:V213G,S:I410I,M:D3G","G4184A,C12880T,G20398A,T22200G,C22792T,A26530G","3CLpro:P132H,nsp13:R392C,S:D1146D,3CLpro:R131R,S:I410I,RdRp:L758L,E:T9I,M:Q19E,M:D3G,ORF6:R20R,S:G142D,S:T19I,S:V213G,S:T376A","S:K417N,S:S477N,S:G339D,S:S371F,S:T478K,S:E484A,S:D405N,S:R408S,S:S373P,S:S375F,S:N440K",VOC,,0.0,0.0,0.0,0.0