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datasetListBioEmergences.m
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datasetListBioEmergences.m
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% /* --------------------------------------------------------------------------------------
% * File: datasetListBioEmergences.m
% * Date: 01/06/2015
% * Author: David Pastor Escuredo, [email protected]
% * Version: 0.2
% * License: BSD
% * --------------------------------------------------------------------------------------
% Copyright (c) 2013-2017, David Pastor Escuredo
% with Biomedical Image Technology, UPM (BIT-UPM)
% with BioEmergences, CNRS
% All rights reserved.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%ZEBRAFISH BIOEMERGENCES DATASETS INPUT
%Set your dN in loadDataset
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
dataLocal=0;
dataNewOrientation=0
newData=0
if dataNewOrientation
if dN==2
dataset='151113a'
trackID='21048'
tini=4
tfinal=131
if tinilag<0
tinilag=0
end
elseif dN==1
dataset='151113aM'
trackID='21134'
tini=4
tfinal=108
if tinilag<0
tinilag=0
end
elseif dN==3
dataset='151118aM'
trackID='21135'
tini=10
tfinal=139
if tinilag<0
tinilag=0
end
elseif dN==4
dataset='151124aF'%not found
trackID='21137'
tini=28
tfinal=150
if tinilag<0
tinilag=0
end
elseif dN==5
dataset='151125aM'
trackID='21137'
tini=4
tfinal=120
if tinilag<0
tinilag=0
end
elseif dN==6
dataset='151126aF'%not found
trackID='21138'
tini=52
tfinal=173
if tinilag<0
tinilag=0
end
elseif dN==7
dataset='160524aF'
trackID='21168'
tini=52
tfinal=173
if tinilag<0
tinilag=0
end
elseif dN==8
dataset='160525aF'
trackID='21167'
tini=51
tfinal=171
if tinilag<0
tinilag=0
end
elseif dN==9
dataset='160105aF'
trackID='21133'
tini=34
tfinal=150
if tinilag<0
tinilag=0
end
phenotype='trilobite'
elseif dN==10
dataset='160105a'
trackID='21139'
tini=37
tfinal=150
if tinilag<0
tinilag=0
end
phenotype='trilobite'
elseif dN==11
dataset='170123a'
trackID='21233'
tini=0
tfinal=350
if tinilag<0
tinilag=0
end
phenotype='syamese'
end
else
if dN==1
dataset='071226a'
trackID='20801'
tini=0;
tfinal=230;
if tinilag<0
tinilag=108
%61 71 85 108 118 131 155
% 178 189 201
end
t_max_cluster=178
% t_max_cluster=85
% t_max_cluster=108
% t_max_cluster=131
% t_max_cluster=155
% t_max_cluster=201
elseif dN==111%tracking alternative 1
dataset='071226a'
trackID = '20046'
tini=0;
tfinal=230;
if tinilag<0
tinilag=51
end
elseif dN==112%tracking alternative 2
dataset='071226a'
trackID = '20836'
tini=0;
tfinal=230;
if tinilag<0
tinilag=51
end
elseif dN==2
dataset='140523aF'
trackID='20787'
tini=0;
tfinal=209;
if tinilag<0
tinilag=62
end
t_max_cluster=209
elseif dN==3
dataset='141106aF'
trackID='20849'
tini=0
tfinal=200%230
if tinilag<0
tinilag=39
end
t_max_cluster=200
elseif dN==4
dataset='141108aF'
trackID='20854'
tini=0
tfinal=168%230
if tinilag<0
tinilag=8
end
t_max_cluster=168
elseif dN==5
dataset='141108a'
trackID='20865'
tini=0
tfinal=198%230
if tinilag<0
tinilag=39
end
t_max_cluster=198
elseif dN==91
dataset='141121a'
trackID='20886'
tini=0
tfinal=265
if tinilag<0
tinilag=0
end
elseif dN==92
dataset='141121aF'
trackID='20888'
tini=0
tfinal=265
if tinilag<0
tinilag=0
end
elseif dN==63
dataset='081018a'
trackID='21188'
tini=0
tfinal=237%200
if tinilag<0
tinilag=106
end
dataLocal=0;
elseif dN==61
dataset='081018a'
trackID='20055'
tini=0
tfinal=237%200
if tinilag<0
tinilag=106
end
dataLocal=0;
elseif dN==62
dataset='081018a'
trackID='20972'
tini=0
tfinal=237%200
if tinilag<0
tinilag=106
end
dataLocal=0;
elseif dN==6
dataset='081018a'
trackID='21189'
tini=0
tfinal=237%200
if tinilag<0
tinilag=154
%95 106 130 154 178
end
t_max_cluster=213%13hpf
dataLocal=0;
elseif dN==71
dataset='081025a'
trackID='20056'
tini=0
tfinal=320%200
if tinilag<0
tinilag=86
end
dataLocal=0;
elseif dN==7
dataset='081025a'
trackID='21211'
tini=0
tfinal=222%320%
if tinilag<0
tinilag=154
%86, 108, 154
end
dataLocal=0;
t_max_cluster=222%13hpf
elseif dN==72
dataset='081025a'
trackID='21221'
tini=0
tfinal=320%200
if tinilag<0
tinilag=86
end
dataLocal=0;
elseif dN==8
dataset='160330aF'
trackID='21199'
tini=0
tfinal=222%200
if tinilag<0
tinilag=50
end
dataLocal=0;
elseif dN==81
dataset='160330aF'
trackID='21201'
tini=0
tfinal=222%200
if tinilag<0
tinilag=50
end
dataLocal=0;
elseif dN==10
dataset='160324aF'
trackID='21191'
tini=0
tfinal=350%200
if tinilag<0
tinilag=48
end
dataLocal=0;
elseif dN==101
dataset='160324aF'
trackID='21192'
tini=0
tfinal=350%200
if tinilag<0
tinilag=48
end
dataLocal=0;
elseif dN==11
dataset='161012a'
trackID='21197'
tini=0
tfinal=255%200
if tinilag<0
tinilag=57
end
dataLocal=0;
elseif dN==12
dataset='100210aF'
trackID='20295'
tini=0
tfinal=225%200
if tinilag<0
tinilag=45
end
dataLocal=0;
elseif dN==121
dataset='100210aF'
trackID='20458'
tini=0
tfinal=225%200
if tinilag<0
tinilag=45
end
dataLocal=0;
elseif dN==13
dataset='120914aF'
trackID='20484'
tini=0
tfinal=169%193%200
if tinilag<0
tinilag=109
%8-50 %10.5 109
end
dataLocal=0;
t_max_cluster=169 %13hpf
elseif dN==14
dataset='091021aF'
trackID='20725'
tini=0
tfinal=184%204
if tinilag<0
tinilag=105
%105 and 154 (10.5) and 184 (12)
end
dataLocal=0;
t_max_cluster=200%there is something weird at the end so we save 4 steps
t_max_cluster=184
tfinal=184
elseif dN==15
dataset='091016aF'
trackID='21229'
tini=0
tfinal=213%200
if tinilag<0
tinilag=154%103%154
%103 8 %158 10.5
end
dataLocal=0;
t_max_cluster=208
elseif dN==151
dataset='091016aF'
trackID='20121'
tini=0
tfinal=270%200
if tinilag<0
tinilag=45
end
dataLocal=0;
elseif dN==16
dataset='170315aF'
trackID='21252'
tini=0
tfinal=250%286%250(13)
if tinilag<0
tinilag=73%73%143
end
dataLocal=0;
elseif dN==17
dataset='170321aF'
trackID='21250'
tini=0
tfinal=270%243, 216
if tinilag<0
tinilag=135%81%135
end
dataLocal=0;
elseif dN==18
dataset='071224aF'
trackID='21272'
tini=0
tfinal=172%155
if tinilag<0
tinilag=112
%69 %112
end
dataLocal=0;
t_max_cluster=155
elseif dN==19
dataset='091023aF'
trackID='21274'
tini=0
tfinal=172%243, 216
if tinilag<0
tinilag=69%
end
dataLocal=0;
elseif dN==20
dataset='160106'
trackID=''
tini=0
tfinal=49%243, 216
if tinilag<0
tinilag=0%81%135
end
dataLocal=1;
end
end
if newData
if dN==1
dataset='180516aF'
trackID='21383'
tini=0
tfinal=300
if tinilag<0
tinilag=0
end
elseif dN==2
dataset='180420hZ'
trackID='21361'
tini=0
tfinal=300
if tinilag<0
tinilag=0
end
end
end