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loadDatasetBioEmergences.m
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loadDatasetBioEmergences.m
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% David Pastor Escuredo. 2012/2015 BIT-UPM
% Tracking Kinematics Framework
% (C) All rights reserved
%%%%%%%%%%%%%%%%%%%%%% SELECT YOUR DATASET %%%%%%%%%%%%%%%%%
%USER!!!!
%Set your Dataset id in datasetList.m
%dN
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%dN=1
%tinilag=-1
loadLibs;
loadDatapath;
datasetListBioEmergences;
%%% Presets
dd=dataset
sizePixel=[512 512 512]
spacingPixel=[1 1 1]
steps=100;
vsteps=steps;
t0=0;%secs
dt_ms=1;%1 milisec
species='undefined'
bioemergences=1
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%% BIOEMERGECES DATA %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%DatasetInfo%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%sizePixel pixels in x y z
%spacingPixel spacing in microns for x y z
%steps number of timesteps in the time-lapse
%t0 start of imaging in "
%dt timestep in milisecs betweent steps
%species animal of the dataset
if bioemergences && ~dataLocal
[sizePixel spacingPixel steps t0 dt_ms species ]=readDataParamBioemergences(dataset);
if tini==-1
tini=0;
end
if tfinal==-1
tfinal=steps-1;
end
if steps<(tfinal+1)
tfinal=steps-1;
end
vsteps=tfinal+1;
end
t0_ms=t0*1000;
dt_hours=dt_ms/(1000*3600);%from milisec to hours
t0_hours=t0_ms/(1000*3600);%from miliec to hours
dt_min=dt_ms/(1000*60)%from milisec to min
t0_min=t0_ms/(1000*60);%from miliec to min
dt_sec=dt_ms/(1000);%from milisec to min
t0_sec=t0_ms/(1000);%from miliec to min