Faithful Ferret

v1.2.8

OLOGRAM-MODL is alive.

Elegant Eland

Fix a LARS coder bug in OLOGRAM.

Delightful Danio rerio

Fixing Bioconda build with osx

Colourful Cow

Fix requirements.txt

Black Booby

Fixed an issue in setup.py (support for py38).

Agile Angelfish

Fixed duplicates in recursion in OLOGRAM-MODL.

Zenithal Zebu

Fix #139

Yappy Yak

This version introduces OLOGRAM-MODL, a new paradigm for OLOGRAM to find intersections between multiple sets of genomic regions at once and then compute their enrichment with OLOGRAM. An optional algorithm (MODL) to find interesting combinations with sparse dictionary learning and greedy submodular optimisation has also been added. Furthermore, it also contains major speedups to OLOGRAM itself.

Xenial Xenarthra

Fix #123, #122, #121, #120, #119

Warm Wasp

Fix: --more-bed-labels in OLOGRAM. Should be facultative now.