{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":445270226,"defaultBranch":"master","name":"nf-core-viralrecon","ownerLogin":"drpatelh","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2022-01-06T18:24:19.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/23529759?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1679396140.0","currentOid":""},"activityList":{"items":[{"before":"2d15fb1c402b1197de62070a8d24ebfd160397fa","after":"db87b06dec47b8e76fa12fc2a54e327f09294d63","ref":"refs/heads/fixes","pushedAt":"2023-08-21T17:04:56.000Z","pushType":"push","commitsCount":38,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Merge pull request #384 from nf-core/nf-core-template-merge-2.9\n\nImportant! Template update for nf-core/tools v2.9","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1782851969\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/viralrecon/issues/384\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/viralrecon/pull/384/hovercard\" href=\"https://github.com/nf-core/viralrecon/pull/384\">nf-core#384</a> from nf-core/nf-core-template-merge-2.9"}},{"before":"5daf5a83eae08005eec39c4a4db1a6f540601711","after":"2d15fb1c402b1197de62070a8d24ebfd160397fa","ref":"refs/heads/fixes","pushedAt":"2023-03-24T09:37:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Bump pipeline version to 2.7.0dev","shortMessageHtmlLink":"Bump pipeline version to 2.7.0dev"}},{"before":"e5d52933cc509bf9fa190078cc225c03ed3c53d6","after":"5daf5a83eae08005eec39c4a4db1a6f540601711","ref":"refs/heads/fixes","pushedAt":"2023-03-24T09:35:42.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Merge pull request #370 from drpatelh/fixes\n\nFix #368","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1636460383\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/viralrecon/issues/370\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/viralrecon/pull/370/hovercard\" href=\"https://github.com/nf-core/viralrecon/pull/370\">nf-core#370</a> from drpatelh/fixes"}},{"before":"8e84699b89f7638438178dcfe6cf8e611be52a9b","after":"e5d52933cc509bf9fa190078cc225c03ed3c53d6","ref":"refs/heads/fixes","pushedAt":"2023-03-23T10:10:55.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Change = to ~ everywhere - thanks for opening Pandora's box @jfy133","shortMessageHtmlLink":"Change = to ~ everywhere - thanks for opening Pandora's box <a class=\"user-mention notranslate\" data-hovercard-type=\"user\" data-hovercard-url=\"/users/jfy133/hovercard\" data-octo-click=\"hovercard-link-click\" data-octo-dimensions=\"link_type:self\" href=\"https://github.com/jfy133\">@jfy133</a>"}},{"before":"e765818a26471d720976cb197e582fb004d5dd1f","after":"8e84699b89f7638438178dcfe6cf8e611be52a9b","ref":"refs/heads/fixes","pushedAt":"2023-03-23T09:47:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Update lib/NfcoreTemplate.groovy\n\nCo-authored-by: James A. Fellows Yates <jfy133@gmail.com>","shortMessageHtmlLink":"Update lib/NfcoreTemplate.groovy"}},{"before":"99d388effa8fa5e657f6466db93988f2e8fd0ae4","after":"e765818a26471d720976cb197e582fb004d5dd1f","ref":"refs/heads/fixes","pushedAt":"2023-03-22T22:31:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Add main for consistency in subworkflow path","shortMessageHtmlLink":"Add main for consistency in subworkflow path"}},{"before":"61124b2546e45085f6a7e7b8ae473b944bce1d66","after":"99d388effa8fa5e657f6466db93988f2e8fd0ae4","ref":"refs/heads/fixes","pushedAt":"2023-03-22T22:23:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Update message in README and usage docs","shortMessageHtmlLink":"Update message in README and usage docs"}},{"before":"a584b82ef8074a98bdf037b7ca3e4297761a0c06","after":"61124b2546e45085f6a7e7b8ae473b944bce1d66","ref":"refs/heads/fixes","pushedAt":"2023-03-22T22:11:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Reword warning","shortMessageHtmlLink":"Reword warning"}},{"before":"5b85276575ed6de972031034968e394f60b4a1c0","after":"a584b82ef8074a98bdf037b7ca3e4297761a0c06","ref":"refs/heads/fixes","pushedAt":"2023-03-22T21:29:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Add more prominent warnings about using custom config to provide parameters","shortMessageHtmlLink":"Add more prominent warnings about using custom config to provide para…"}},{"before":"8abaab4f5a53575e015838fe208d5726afb49f9b","after":"5b85276575ed6de972031034968e394f60b4a1c0","ref":"refs/heads/fixes","pushedAt":"2023-03-22T20:34:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Fix #368","shortMessageHtmlLink":"<span class=\"issue-keyword tooltipped tooltipped-se\" aria-label=\"This commit closes issue #368.\">Fix</span> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1636305776\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/viralrecon/issues/368\" data-hovercard-type=\"issue\" data-hovercard-url=\"/nf-core/viralrecon/issues/368/hovercard\" href=\"https://github.com/nf-core/viralrecon/issues/368\">nf-core#368</a>"}},{"before":"1faf8b13ff49927df4d2e87871f6aee3175a2413","after":"8abaab4f5a53575e015838fe208d5726afb49f9b","ref":"refs/heads/fixes","pushedAt":"2023-03-22T20:29:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Merge pull request #366 from drpatelh/fixes\n\nFinal pre-release fixes","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1633692510\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/viralrecon/issues/366\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/viralrecon/pull/366/hovercard\" href=\"https://github.com/nf-core/viralrecon/pull/366\">nf-core#366</a> from drpatelh/fixes"}},{"before":"0260f9ed0bfd684ca9f3e419696d4b39433e9945","after":"1faf8b13ff49927df4d2e87871f6aee3175a2413","ref":"refs/heads/fixes","pushedAt":"2023-03-21T11:16:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Fix paths in subworkflows","shortMessageHtmlLink":"Fix paths in subworkflows"}},{"before":"363bdda95bb0a0f82c9071b03dafdad164f6d4bf","after":"0260f9ed0bfd684ca9f3e419696d4b39433e9945","ref":"refs/heads/fixes","pushedAt":"2023-03-21T10:59:49.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Update all nf-core/modules and subworkflows","shortMessageHtmlLink":"Update all nf-core/modules and subworkflows"}},{"before":null,"after":"363bdda95bb0a0f82c9071b03dafdad164f6d4bf","ref":"refs/heads/fixes","pushedAt":"2023-03-21T10:55:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Merge pull request #365 from drpatelh/sync\n\nCreate new folder on test-datasets for all samplesheets","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1631104451\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/viralrecon/issues/365\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/viralrecon/pull/365/hovercard\" href=\"https://github.com/nf-core/viralrecon/pull/365\">nf-core#365</a> from drpatelh/sync"}},{"before":"adff5a0fb1b17e8cfad7e64980ad1126444b2184","after":"4425692e3a7645963e5c2d63ac073301ddb2b4ad","ref":"refs/heads/sync","pushedAt":"2023-03-20T11:40:12.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Use semantic versioning","shortMessageHtmlLink":"Use semantic versioning"}},{"before":"d73b59712ffcb7045a110fec116ee70857d796b2","after":"adff5a0fb1b17e8cfad7e64980ad1126444b2184","ref":"refs/heads/sync","pushedAt":"2023-03-19T20:21:28.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Change S3 path to igenomes for kraken2 database","shortMessageHtmlLink":"Change S3 path to igenomes for kraken2 database"}},{"before":"1d2c7739075c72737d7976657df582071f24795b","after":"d73b59712ffcb7045a110fec116ee70857d796b2","ref":"refs/heads/sync","pushedAt":"2023-03-17T17:46:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Merge pull request #364 from drpatelh/sync\n\nRemove native processes using local executor","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1629096693\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/viralrecon/issues/364\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/viralrecon/pull/364/hovercard\" href=\"https://github.com/nf-core/viralrecon/pull/364\">nf-core#364</a> from drpatelh/sync"}},{"before":"2bbc9c72fbb316b7149c4d9945af7568babae63a","after":"1d2c7739075c72737d7976657df582071f24795b","ref":"refs/heads/sync","pushedAt":"2023-03-17T16:56:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Remove --tracedir","shortMessageHtmlLink":"Remove --tracedir"}},{"before":"aa613a7a544ba3e12149bc1bf5f08ec46f266a5e","after":"2bbc9c72fbb316b7149c4d9945af7568babae63a","ref":"refs/heads/sync","pushedAt":"2023-03-17T10:40:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Fix order of sections in MultiQC report","shortMessageHtmlLink":"Fix order of sections in MultiQC report"}},{"before":"ab0700df32171b4fffc388a1527952e54071bdef","after":"aa613a7a544ba3e12149bc1bf5f08ec46f266a5e","ref":"refs/heads/sync","pushedAt":"2023-03-16T17:16:32.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Merge branch 'dev' of https://github.com/nf-core/viralrecon into sync","shortMessageHtmlLink":"Merge branch 'dev' of <a href=\"https://github.com/nf-core/viralrecon\">https://github.com/nf-core/viralrecon</a> into sync"}},{"before":"6818077a25f1718a0a8aa33619a8a0d8411e07d7","after":"ab0700df32171b4fffc388a1527952e54071bdef","ref":"refs/heads/sync","pushedAt":"2023-03-16T17:16:13.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Replace MULTIQC_TSV_FROM_LIST with custom function - Illumina","shortMessageHtmlLink":"Replace MULTIQC_TSV_FROM_LIST with custom function - Illumina"}},{"before":"e0e88ae961bdbfbfe2a4325b47e214fb2d454511","after":"6818077a25f1718a0a8aa33619a8a0d8411e07d7","ref":"refs/heads/sync","pushedAt":"2023-03-13T19:56:11.464Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Do not evaluate params.gff for SNPEFF_BUILD","shortMessageHtmlLink":"Do not evaluate params.gff for SNPEFF_BUILD"}},{"before":"a8477dc3fc3a73dff3c5bdb58cb9b3e5c75a8ef3","after":"e0e88ae961bdbfbfe2a4325b47e214fb2d454511","ref":"refs/heads/sync","pushedAt":"2023-03-13T17:59:21.458Z","pushType":"push","commitsCount":3,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Always provide reference data as value channels - ONT","shortMessageHtmlLink":"Always provide reference data as value channels - ONT"}},{"before":"9aea8b01cb6cae2217566ed3a3aa88381d591d5f","after":"a8477dc3fc3a73dff3c5bdb58cb9b3e5c75a8ef3","ref":"refs/heads/sync","pushedAt":"2023-03-13T12:20:51.645Z","pushType":"push","commitsCount":4,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Add software version changes to CHANGELOG","shortMessageHtmlLink":"Add software version changes to CHANGELOG"}},{"before":"ee012be9ccc24a0cfa166d7e73dd2418165a3eb2","after":"9aea8b01cb6cae2217566ed3a3aa88381d591d5f","ref":"refs/heads/sync","pushedAt":"2023-03-13T11:17:56.431Z","pushType":"push","commitsCount":2,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Update CHANGELOG","shortMessageHtmlLink":"Update CHANGELOG"}},{"before":"aa9e15b12cce41a372d5a5a56f5893e9fd8f36ee","after":"ee012be9ccc24a0cfa166d7e73dd2418165a3eb2","ref":"refs/heads/sync","pushedAt":"2023-03-12T19:06:20.278Z","pushType":"push","commitsCount":1,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Merge pull request #360 from drpatelh/sync\n\nFix #316 #320 #349","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1620157125\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/viralrecon/issues/360\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/viralrecon/pull/360/hovercard\" href=\"https://github.com/nf-core/viralrecon/pull/360\">nf-core#360</a> from drpatelh/sync"}},{"before":"4be0ce156efdab6d4a42bee4ef050ba56ab7a13c","after":"aa9e15b12cce41a372d5a5a56f5893e9fd8f36ee","ref":"refs/heads/sync","pushedAt":"2023-03-11T23:22:00.931Z","pushType":"push","commitsCount":3,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Run nf-core modules update --all after bumping versions","shortMessageHtmlLink":"Run nf-core modules update --all after bumping versions"}},{"before":"b06c516134ee2bfa207e9566cc8cc7d4faa65c6e","after":"4be0ce156efdab6d4a42bee4ef050ba56ab7a13c","ref":"refs/heads/sync","pushedAt":"2023-03-11T21:55:28.862Z","pushType":"push","commitsCount":2,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Bump versions for nf-core/modules","shortMessageHtmlLink":"Bump versions for nf-core/modules"}},{"before":"1089e6df8ada2b4dda9a4ea0a5be31fe36df591a","after":"b06c516134ee2bfa207e9566cc8cc7d4faa65c6e","ref":"refs/heads/sync","pushedAt":"2023-03-11T21:29:41.599Z","pushType":"push","commitsCount":2,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Add collect() where required after updating ref channels","shortMessageHtmlLink":"Add collect() where required after updating ref channels"}},{"before":"dec2a218f529b02ca2e94d7e574c2e925936852b","after":"1089e6df8ada2b4dda9a4ea0a5be31fe36df591a","ref":"refs/heads/sync","pushedAt":"2023-03-11T21:10:29.524Z","pushType":"push","commitsCount":4,"pusher":{"login":"drpatelh","name":"Harshil Patel","path":"/drpatelh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23529759?s=80&v=4"},"commit":{"message":"Fix syntax consistency","shortMessageHtmlLink":"Fix syntax consistency"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADbz5GQwA","startCursor":null,"endCursor":null}},"title":"Activity · drpatelh/nf-core-viralrecon"}