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Define new celltypes #74

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restore1997 opened this issue Aug 26, 2023 · 1 comment

restore1997 commented Aug 26, 2023

Can I define new celltype using xCell with a list of genes?
For example, define TRM cells with "CD8A, CD69, CD103, PDCD1 and TOP2A"

Owner

dviraran commented Aug 27, 2023

The current version of xCell is pre-trained, so you can't add anything.
Even in the version we are currently working on that can be trained you won't be able to just add a signature, but need a reference transcriptome that includes the cell type of interest.

Best,
Dvir

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