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Allen Brain rui_locations.jsonld
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Allen Brain rui_locations.jsonld
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[
{
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-entity-context.jsonld",
"@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001",
"@type": "Donor",
"sex": "Female",
"age": 60,
"label": "Female, Age 60",
"description": "Entered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"link": "http://data.nemoarchive.org/biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/processed/",
"consortium_name": "Allen Institute for Brain Science",
"provider_name": "Allen Institute for Brain Science",
"provider_uuid": "8dca7930-e16b-4301-9ad3-de202225d27f",
"samples": [
{
"@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001.CX48.M1C.001/Block1_10X#TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "5 x 5 x 10 millimeter, .11 millimeter, 1 Sections",
"link": "http://data.nemoarchive.org/biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/processed/",
"section_count": 1,
"section_size": 0.11,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/a388eebd-02f8-4a5c-ab8e-62405ce34e99",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0035932",
"http://purl.obolibrary.org/obo/UBERON_0002581",
"http://purl.obolibrary.org/obo/UBERON_0002813"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 5,
"y_dimension": 5,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/a388eebd-02f8-4a5c-ab8e-62405ce34e99_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHFAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 79.877,
"y_translation": 139.048,
"z_translation": 56.52,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001.CX48.M1C.001/Block1_10X#Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: 10x",
"link": "http://data.nemoarchive.org/biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/processed/",
"technology": "10x",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
},
{
"@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001.CX48.M1C.002/Block2_10X#TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "5 x 5 x 10 millimeter, .11 millimeter, 1 Sections",
"link": "http://data.nemoarchive.org/biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/processed/",
"section_count": 1,
"section_size": 0.11,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/5c78be2e-d36c-4994-ae42-a94ccf935988",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0002661",
"http://purl.obolibrary.org/obo/UBERON_0035932",
"http://purl.obolibrary.org/obo/UBERON_0002581",
"http://purl.obolibrary.org/obo/UBERON_0002813"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 5,
"y_dimension": 5,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/5c78be2e-d36c-4994-ae42-a94ccf935988_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHFAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 87.377,
"y_translation": 136.548,
"z_translation": 59.02,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001.CX48.M1C.002/Block2_10X#Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: 10x",
"link": "http://data.nemoarchive.org/biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/processed/",
"technology": "10x",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
},
{
"@id": "http://purl.org/ccf/1.5/allen-brain/H18.30.001.CX48.M1C.002", //Block1_SSv4.json
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "5 x 5 x 10 millimeter, .11 millimeter, 1 Sections",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"section_count": 1,
"section_size": 0.11,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/6e0b9e06-b5a5-4f05-ab2c-6146c5d930b3",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0035932",
"http://purl.obolibrary.org/obo/UBERON_0002581",
"http://purl.obolibrary.org/obo/UBERON_0002813"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 5,
"y_dimension": 5,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/6e0b9e06-b5a5-4f05-ab2c-6146c5d930b3_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 85.29,
"y_translation": 137.459,
"z_translation": 56.426,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/6e0b9e06-b5a5-4f05-ab2c-6146c5d930b3_Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: SSv4",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"technology": "OTHER",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
}
]
},
{ //Donor H18.30.002
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-entity-context.jsonld", //donor H18.30.002
"@id": "http://purl.org/ccf/1.5/a388eebd-02f8-4a5c-ab8e-62405ce34e99_Donor",
"@type": "Donor",
"sex": "Male",
"age": 50,
"label": "Male, Age 50",
"description": "Entered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"link": "http://data.nemoarchive.org/biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/processed/",
"consortium_name": "Allen Institute for Brain Science",
"provider_name": "Allen Institute for Brain Science",
"provider_uuid": "8dca7930-e16b-4301-9ad3-de202225d27f",
"samples": [
{ //Block3_10X.json
"@id": "http://purl.org/ccf/1.5/b66043e8-9a0c-4883-93e2-017026659575_TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "5 x 5 x 10 millimeter, .11 millimeter, 1 Sections",
"link": "http://data.nemoarchive.org/biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/processed/",
"section_count": 1,
"section_size": 0.11,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/b66043e8-9a0c-4883-93e2-017026659575",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0035932",
"http://purl.obolibrary.org/obo/UBERON_0002581",
"http://purl.obolibrary.org/obo/UBERON_0002813"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 5,
"y_dimension": 5,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/b66043e8-9a0c-4883-93e2-017026659575_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 80.264,
"y_translation": 137.87,
"z_translation": 55.596,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/b66043e8-9a0c-4883-93e2-017026659575_Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: 10x",
"link": "http://data.nemoarchive.org/biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/processed/",
"technology": "10x",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
},
{ //Block2_SSv4.json
"@id": "http://purl.org/ccf/1.5/6e0b9e06-b5a5-4f05-ab2c-6146c5d930b3_TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "5 x 5 x 10 millimeter, .11 millimeter, 1 Sections",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"section_count": 1,
"section_size": 0.11,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/6e0b9e06-b5a5-4f05-ab2c-6146c5d930b3",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0035932",
"http://purl.obolibrary.org/obo/UBERON_0002581",
"http://purl.obolibrary.org/obo/UBERON_0002813"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 5,
"y_dimension": 5,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/6e0b9e06-b5a5-4f05-ab2c-6146c5d930b3_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 85.29,
"y_translation": 137.459,
"z_translation": 56.426,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/6e0b9e06-b5a5-4f05-ab2c-6146c5d930b3_Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: SSv4",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"technology": "OTHER",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
},
]
},
{ //Donor H200.1023
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-entity-context.jsonld",
"@id": "http://purl.org/ccf/1.5/f7500931-e3b6-4aab-bed8-735619fe645e_Donor",
"@type": "Donor",
"sex": "Female",
"age": 43,
"label": "Female, Age 43",
"description": "Entered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"consortium_name": "Allen Institute for Brain Science",
"provider_name": "Allen Institute for Brain Science",
"provider_uuid": "8dca7930-e16b-4301-9ad3-de202225d27f",
"samples": [
{ //Block3_SSv4.json
"@id": "http://purl.org/ccf/1.5/f7500931-e3b6-4aab-bed8-735619fe645e_TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "10 x 10 x 10 millimeter, .11 millimeter, 1 Sections",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"section_count": 1,
"section_size": 10,
"section_units": "millimeter",
"section_count": 1,
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/f7500931-e3b6-4aab-bed8-735619fe645e",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0002661",
"http://purl.obolibrary.org/obo/UBERON_0002581",
"http://purl.obolibrary.org/obo/UBERON_0002813"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 10,
"y_dimension": 10,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/f7500931-e3b6-4aab-bed8-735619fe645e_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHFAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 106.085,
"y_translation": 128.672,
"z_translation": 66.047,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/6e0b9e06-b5a5-4f05-ab2c-6146c5d930b3_Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: SSv4",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"technology": "OTHER",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
},
{ //Block4_SSv4
"@id": "http://purl.org/ccf/1.5/4e24cfc4-bfea-4233-8fa0-d9967e3bdf7d_TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "10 x 10 x 10 millimeter, .11 millimeter, 1 Sections",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"section_count": 1,
"section_size": 10,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/4e24cfc4-bfea-4233-8fa0-d9967e3bdf7d",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0002661",
"http://purl.obolibrary.org/obo/UBERON_0035932",
"http://purl.obolibrary.org/obo/UBERON_0002581",
"http://purl.obolibrary.org/obo/UBERON_0006093",
"http://purl.obolibrary.org/obo/UBERON_0002813"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 20,
"y_dimension": 20,
"z_dimension": 20,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/4e24cfc4-bfea-4233-8fa0-d9967e3bdf7d_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHFAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 82.585,
"y_translation": 130.672,
"z_translation": 62.047,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/4e24cfc4-bfea-4233-8fa0-d9967e3bdf7d_Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: SSv4",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"technology": "OTHER",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
}
]
},
{ //Donor H200.1025
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-entity-context.jsonld",
"@id": "http://purl.org/ccf/1.5/117273d2-9291-4665-9a8b-e7420eb1452e_Donor",
"@type": "Donor",
"sex": "Male",
"age": 50,
"label": "Male, Age 50",
"description": "Entered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"consortium_name": "Allen Institute for Brain Science",
"provider_name": "Allen Institute for Brain Science",
"provider_uuid": "8dca7930-e16b-4301-9ad3-de202225d27f",
"samples": [
{ //Block5_SSv4.json
"@id": "http://purl.org/ccf/1.5/117273d2-9291-4665-9a8b-e7420eb1452e_TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "10 x 10 x 10 millimeter, 10 millimeter, 1 Sections",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"section_count": 1,
"section_size": 10,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/117273d2-9291-4665-9a8b-e7420eb1452e",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0002661",
"http://purl.obolibrary.org/obo/UBERON_0002581",
"http://purl.obolibrary.org/obo/UBERON_0002813"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 10,
"y_dimension": 10,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/117273d2-9291-4665-9a8b-e7420eb1452e_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 108.181,
"y_translation": 125.927,
"z_translation": 65.59,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/117273d2-9291-4665-9a8b-e7420eb1452e_Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: SSv4",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"technology": "OTHER",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
},
{ //Block6_SSv4.json
"@id": "http://purl.org/ccf/1.5/4d483843-3032-4e1d-8edb-b75d2e2377dd_TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "10 x 10 x 10 millimeter, 10 millimeter, 1 Sections",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"section_count": 1,
"section_size": 10,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/4d483843-3032-4e1d-8edb-b75d2e2377dd",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0002661",
"http://purl.obolibrary.org/obo/UBERON_0035932",
"http://purl.obolibrary.org/obo/UBERON_0002581",
"http://purl.obolibrary.org/obo/UBERON_0006093",
"http://purl.obolibrary.org/obo/UBERON_0002813"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 10,
"y_dimension": 10,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/4d483843-3032-4e1d-8edb-b75d2e2377dd_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 78.181,
"y_translation": 137.427,
"z_translation": 60.09,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/4d483843-3032-4e1d-8edb-b75d2e2377dd_Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: SSv4",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"technology": "OTHER",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
}
]
},
{ //Donor H200.1030
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-entity-context.jsonld",
"@id": "http://purl.org/ccf/1.5/0ced68fa-8bff-45d9-949f-3004c3b08d19_Donor",
"@type": "Donor",
"sex": "Male",
"age": 54,
"label": "Male, Age 54",
"description": "Entered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"consortium_name": "Allen Institute for Brain Science",
"provider_name": "Allen Institute for Brain Science",
"provider_uuid": "8dca7930-e16b-4301-9ad3-de202225d27f",
"samples": [
{ //Block7_SSv4.json
"@id": "http://purl.org/ccf/1.5/0ced68fa-8bff-45d9-949f-3004c3b08d19_TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "20 x 20 x 10 millimeter, .11 millimeter, 1 Sections",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"section_count": 1,
"section_size": 0.11,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/0ced68fa-8bff-45d9-949f-3004c3b08d19",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002812",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0006093",
"http://purl.obolibrary.org/obo/UBERON_0002740"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 20,
"y_dimension": 20,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/0ced68fa-8bff-45d9-949f-3004c3b08d19_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 35.917,
"y_translation": 122.713,
"z_translation": 67.59,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/0ced68fa-8bff-45d9-949f-3004c3b08d19_Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: SSv4",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"technology": "OTHER",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
},
{ //Block8_SSv4
"@id": "http://purl.org/ccf/1.5/1a3fb7c9-f6ca-45fc-aa1a-d1b9e1a53da0_TissueBlock",
"@type": "Sample",
"sample_type": "Tissue Block",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"description": "20 x 20 x 10 millimeter, .11 millimeter, 1 Sections",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"section_count": 1,
"section_size": 0.11,
"section_units": "millimeter",
"rui_location": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/1a3fb7c9-f6ca-45fc-aa1a-d1b9e1a53da0",
"@type": "SpatialEntity",
"creator": "Raymond Sanchez",
"creator_first_name": "Raymond",
"creator_last_name": "Sanchez",
"creation_date": "2022-08-29",
"ccf_annotations": [
"http://purl.obolibrary.org/obo/UBERON_0013702",
"http://purl.obolibrary.org/obo/UBERON_0000955",
"http://purl.obolibrary.org/obo/UBERON_0002812",
"http://purl.obolibrary.org/obo/UBERON_0002703",
"http://purl.obolibrary.org/obo/UBERON_0035932",
"http://purl.obolibrary.org/obo/UBERON_0006093"
],
"slice_thickness": 10000,
"slice_count": 1,
"x_dimension": 20,
"y_dimension": 20,
"z_dimension": 10,
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/1a3fb7c9-f6ca-45fc-aa1a-d1b9e1a53da0_placement",
"@type": "SpatialPlacement",
"target": "http://purl.org/ccf/latest/ccf.owl#VHMAllenBrain",
"placement_date": "2022-08-29",
"x_scaling": 1,
"y_scaling": 1,
"z_scaling": 1,
"scaling_units": "ratio",
"x_rotation": 0,
"y_rotation": 0,
"z_rotation": 0,
"rotation_order": "XYZ",
"rotation_units": "degree",
"x_translation": 58.417,
"y_translation": 130.713,
"z_translation": 62.09,
"translation_units": "millimeter"
}
},
"datasets": [
{
"@id": "http://purl.org/ccf/1.5/1a3fb7c9-f6ca-45fc-aa1a-d1b9e1a53da0_Dataset",
"@type": "Dataset",
"label": "Registered 2022-08-29, Raymond Sanchez, Allen Institute for Brain Science",
"descripition": "Data/Assay Types: SSv4",
"link": "https://assets.nemoarchive.org/dat-72qka5t",
"technology": "OTHER",
"thumbnail": "assets/icons/ico-unknown.svg"
}
]
}
]
}
]