tgraph.vcf

##fileformat=VCFv4.1
##fileDate=20141110
##source=mutatrix population genome simulator
##seed=1415643582
##reference=x.fa
##phasing=true
##commandline=mutatrix --dry-run -s 0.05 -i 0.01 -p 2 x.fa
##INFO=<ID=AC,Number=A,Type=Integer,Description="Alternate allele count">
##INFO=<ID=TYPE,Number=A,Type=String,Description="Type of each allele (snp, ins, del, mnp, complex)">
##INFO=<ID=SVTYPE,Number=A,Type=String,Description="Type of SV">
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples at the site">
##INFO=<ID=NA,Number=1,Type=Integer,Description="Number of alternate alleles">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="Length of each alternate allele">
##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of SV">
##INFO=<ID=MICROSAT,Number=0,Type=Flag,Description="Generated at a sequence repeat loci">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	X
x	5	.	T	<INV>	99	.	SVTYPE=INV;SVLEN=2	GT	1|1
x	9	.	G	<DEL>	99	.	AC=1;LEN=1;NA=1;NS=1;SVTYPE=DEL;SVLEN=2	GT	1|0
x	20	.	T	<DEL>	99	.	AC=1;LEN=1;NA=1;NS=1;SVTYPE=DEL;SVLEN=7	GT	1|0
x	29	.	T	C,G	99	.	AC=1;LEN=1;NA=1;NS=1;	GT	1|0
x	32	1	A	ATTTTAAAA	99	.	SVTYPE=INS;SVLEN=0	GT	1|1
x	35	.	A	C	99	.	AC=1;LEN=1;NA=1;NS=1;	GT	1|0