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<div class="container-fluid main-container">
<div id="header">
</div>
<div id="refs" class="references csl-bib-body hanging-indent" line-spacing="2">
<div id="ref-fu_deep_2023" class="csl-entry">
<div class="csl-block"><strong>Deep multimodal graph-based network for
survival prediction from highly multiplexed images and patient
variables</strong>. (2023)</div>Fu, X., Patrick, E., Yang, J. Y. H.,
Feng, D. D., & Kim, J.<div class="csl-block"><em>Computers in
Biology and Medicine</em>, <em>154</em>, 106576 <a href="https://doi.org/10.1016/j.compbiomed.2023.106576">https://doi.org/10.1016/j.compbiomed.2023.106576</a></div>
</div>
<div id="ref-patrick_spatial_2023" class="csl-entry">
<div class="csl-block"><strong>Spatial analysis for highly multiplexed
imaging data to identify tissue microenvironments</strong>.
(2023)</div>Patrick, E., Canete, N. P., Iyengar, S. S., Harman, A. N.,
Sutherland, G. T., & Yang, P.<div class="csl-block"><em>Cytometry
Part A</em>, <em>In Press</em> <a href="https://doi.org/10.1002/cyto.a.24729">https://doi.org/10.1002/cyto.a.24729</a></div>
</div>
<div id="ref-sawyer_spatial_2023" class="csl-entry">
<div class="csl-block"><strong>Spatial mapping reveals granuloma
diversity and histopathological superstructure in human
tuberculosis</strong>. (2023)</div>Sawyer, A. J., Patrick, E., Edwards,
J., Wilmott, J. S., Fielder, T., Yang, Q., … Feng, C. G.<div class="csl-block"><em>Journal of Experimental Medicine</em>,
<em>220</em>(6), e20221392 <a href="https://doi.org/10.1084/jem.20221392">https://doi.org/10.1084/jem.20221392</a></div>
</div>
<div id="ref-baharlou_situ_2022" class="csl-entry">
<div class="csl-block"><strong>An in situ analysis pipeline for initial
host-pathogen interactions reveals signatures of human colorectal
<span>HIV</span> transmission</strong>. (2022)</div>Baharlou, H.,
Canete, N., Vine, E. E., Hu, K., Yuan, D., Sandgren, K. J., … Harman, A.
N.<div class="csl-block"><em>Cell Reports</em>, <em>40</em>(12), 111385
<a href="https://doi.org/10.1016/j.celrep.2022.111385">https://doi.org/10.1016/j.celrep.2022.111385</a></div>
</div>
<div id="ref-canete_spicyr_2022" class="csl-entry">
<div class="csl-block"><strong><span class="nocase">spicyR</span>:
Spatial analysis of in situ cytometry data in <span>R</span></strong>.
(2022)</div>Canete, N. P., Iyengar, S. S., Ormerod, J. T., Baharlou, H.,
Harman, A. N., & Patrick, E.<div class="csl-block"><em>Bioinformatics (Oxford, England)</em>,
<em>38</em>(11), 3099–3105 <a href="https://doi.org/10.1093/bioinformatics/btac268">https://doi.org/10.1093/bioinformatics/btac268</a></div>
</div>
<div id="ref-cao_scfeatures_2022" class="csl-entry">
<div class="csl-block"><strong><span class="nocase">scFeatures</span>:
<span>Multi</span>-view representations of single-cell and spatial data
for disease outcome prediction</strong>. (2022)</div>Cao, Y., Lin, Y.,
Patrick, E., Yang, P., & Yang, J. Y. H.<div class="csl-block"><em>Bioinformatics (Oxford, England)</em>, btac590 <a href="https://doi.org/10.1093/bioinformatics/btac590">https://doi.org/10.1093/bioinformatics/btac590</a></div>
</div>
<div id="ref-ferguson_high-dimensional_2022" class="csl-entry">
<div class="csl-block"><strong>High-dimensional and spatial analysis
reveals immune landscape dependent progression in cutaneous squamous
cell carcinoma</strong>. (2022)</div>Ferguson, A. L., Sharman, A. R.,
Allen, R. O., Ye, T., Lee, J. H., Low, T.-H. H., … Palendira, U.<div class="csl-block"><em>Clinical Cancer Research: An Official Journal of
the American Association for Cancer Research</em>, CCR-22-1332 <a href="https://doi.org/10.1158/1078-0432.CCR-22-1332">https://doi.org/10.1158/1078-0432.CCR-22-1332</a></div>
</div>
<div id="ref-jiang_third-party_2022" class="csl-entry">
<div class="csl-block"><strong>Third-party <span>CMV</span>- and
<span>EBV</span>-specific <span>T</span>-cells for first viral
reactivation after allogeneic stem cell transplant</strong>.
(2022)</div>Jiang, W., Clancy, L. E., Avdic, S., Sutrave, G., Street,
J., Simms, R., … Gottlieb, D. J.<div class="csl-block"><em>Blood
Advances</em>, <em>6</em>(17), 4949–4966 <a href="https://doi.org/10.1182/bloodadvances.2022007103">https://doi.org/10.1182/bloodadvances.2022007103</a></div>
</div>
<div id="ref-mccorkindale_key_2022" class="csl-entry">
<div class="csl-block"><strong>The <span>Key</span> <span>Factors</span>
<span>Predicting</span> <span>Dementia</span> in
<span>Individuals</span> <span>With</span> <span>Alzheimer</span>’s
<span>Disease</span>-<span>Type</span> <span>Pathology</span></strong>.
(2022)</div>McCorkindale, A. N., Patrick, E., Duce, J. A., Guennewig,
B., & Sutherland, G. T.<div class="csl-block"><em>Frontiers in Aging
Neuroscience</em>, <em>14</em>, 831967 <a href="https://doi.org/10.3389/fnagi.2022.831967">https://doi.org/10.3389/fnagi.2022.831967</a></div>
</div>
<div id="ref-purvis_research_2022" class="csl-entry">
<div class="csl-block"><strong>Research trends in <span>Australia</span>
and <span>New</span> <span>Zealand</span> <span>Nephrology</span>: Basic
science and gender equity in peril</strong>. (2022)</div>Purvis, M. R.,
Robertson, H., Patrick, E., & Rogers, N. M.<div class="csl-block"><em>Internal Medicine Journal</em>, <em>52</em>(11),
1991–1994 <a href="https://doi.org/10.1111/imj.15942">https://doi.org/10.1111/imj.15942</a></div>
</div>
<div id="ref-wang_cross-platform_2022" class="csl-entry">
<div class="csl-block"><strong>Cross-<span>Platform</span>
<span>Omics</span> <span>Prediction</span> procedure: A statistical
machine learning framework for wider implementation of precision
medicine</strong>. (2022)</div>Wang, K. Y. X., Pupo, G. M., Tembe, V.,
Patrick, E., Strbenac, D., Schramm, S.-J., … Yang, J. Y. H.<div class="csl-block"><em>NPJ Digital Medicine</em>, <em>5</em>(1), 85 <a href="https://doi.org/10.1038/s41746-022-00618-5">https://doi.org/10.1038/s41746-022-00618-5</a></div>
</div>
<div id="ref-baharlou_afid_2021" class="csl-entry">
<div class="csl-block"><strong><span>AFid</span>: A tool for automated
identification and exclusion of autofluorescent objects from microscopy
images</strong>. (2021)</div>Baharlou, H., Canete, N. P., Bertram, K.
M., Sandgren, K. J., Cunningham, A. L., Harman, A. N., & Patrick,
E.<div class="csl-block"><em>Bioinformatics</em>, <em>37</em>(4),
559–567 <a href="https://doi.org/10.1093/bioinformatics/btaa780">https://doi.org/10.1093/bioinformatics/btaa780</a></div>
</div>
<div id="ref-bertram_herpes_2021" class="csl-entry">
<div class="csl-block"><strong>Herpes <span>Simplex</span>
<span>Virus</span> type 1 infects <span>Langerhans</span> cells and the
novel epidermal dendritic cell, <span>Epi</span>-<span class="nocase">cDC2s</span>, via different entry pathways</strong>.
(2021)</div>Bertram, K. M., Truong, N. R., Smith, J. B., Kim, M.,
Sandgren, K. J., Feng, K. L., … Cunningham, A. L.<div class="csl-block"><em>PLOS Pathogens</em>, <em>17</em>(4), e1009536 <a href="https://doi.org/10.1371/journal.ppat.1009536">https://doi.org/10.1371/journal.ppat.1009536</a></div>
</div>
<div id="ref-chan_treekor_2021" class="csl-entry">
<div class="csl-block"><strong><span class="nocase">treekoR</span>:
Identifying cellular-to-phenotype associations by elucidating
hierarchical relationships in high-dimensional cytometry data</strong>.
(2021)</div>Chan, A., Jiang, W., Blyth, E., Yang, J., & Patrick,
E.<div class="csl-block"><em>Genome Biology</em>, <em>22</em>(1), 324 <a href="https://doi.org/10.1186/s13059-021-02526-5">https://doi.org/10.1186/s13059-021-02526-5</a></div>
</div>
<div id="ref-guennewig_defining_2021" class="csl-entry">
<div class="csl-block"><strong>Defining early changes in
<span>Alzheimer</span>’s disease from <span>RNA</span> sequencing of
brain regions differentially affected by pathology</strong>.
(2021)</div>Guennewig, B., Lim, J., Marshall, L., McCorkindale, A. N.,
Paasila, P. J., Patrick, E., … Sutherland, G. T.<div class="csl-block"><em>Scientific Reports</em>, <em>11</em>(1), 4865 <a href="https://doi.org/10.1038/s41598-021-83872-z">https://doi.org/10.1038/s41598-021-83872-z</a></div>
</div>
<div id="ref-patrick_cortical_2021" class="csl-entry">
<div class="csl-block"><strong>A cortical immune network map identifies
distinct microglial transcriptional programs associated with
beta-amyloid and <span>Tau</span> pathologies</strong>.
(2021)</div>Patrick, E., Olah, M., Taga, M., Klein, H.-U., Xu, J.,
White, C. C., … De Jager, P. L.<div class="csl-block"><em>Translational
Psychiatry</em>, <em>11</em>(1), 1–17 <a href="https://doi.org/10.1038/s41398-020-01175-9">https://doi.org/10.1038/s41398-020-01175-9</a></div>
</div>
<div id="ref-rhodes_human_2021" class="csl-entry">
<div class="csl-block"><strong>Human anogenital monocyte-derived
dendritic cells and langerin+<span>cDC2</span> are major
<span>HIV</span> target cells</strong>. (2021)</div>Rhodes, J. W.,
Botting, R. A., Bertram, K. M., Vine, E. E., Rana, H., Baharlou, H., …
Harman, A. N.<div class="csl-block"><em>Nature Communications</em>,
<em>12</em>(1), 2147 <a href="https://doi.org/10.1038/s41467-021-22375-x">https://doi.org/10.1038/s41467-021-22375-x</a></div>
</div>
<div id="ref-robertson_transcriptomic_2021" class="csl-entry">
<div class="csl-block"><strong>Transcriptomic <span>Analysis</span>
<span>Identifies</span> <span>A</span> <span>Tolerogenic</span>
<span>Dendritic</span> <span>Cell</span>
<span>Signature</span></strong>. (2021)</div>Robertson, H., Li, J., Kim,
H. J., Rhodes, J. W., Harman, A. N., *Patrick, E., & *Rogers, N.
M.<div class="csl-block"><em>Frontiers in Immunology</em>, <em>12</em>,
733231 <a href="https://doi.org/10.3389/fimmu.2021.733231">https://doi.org/10.3389/fimmu.2021.733231</a></div>
</div>
<div id="ref-tong_plasmacytoid_2021" class="csl-entry">
<div class="csl-block"><strong>Plasmacytoid dendritic cells have
divergent effects on <span>HIV</span> infection of initial target cells
and induce a pro-retention phenotype</strong>. (2021)</div>Tong, O.,
Duette, G., O’Neil, T. R., Royle, C. M., Rana, H., Johnson, B., … Nasr,
N.<div class="csl-block"><em>PLOS Pathogens</em>, <em>17</em>(4),
e1009522 <a href="https://doi.org/10.1371/journal.ppat.1009522">https://doi.org/10.1371/journal.ppat.1009522</a></div>
</div>
<div id="ref-tsatsanis_acute_2021" class="csl-entry">
<div class="csl-block"><strong>The acute phase protein lactoferrin is a
key feature of <span>Alzheimer</span>’s disease and predictor of
<span>Abeta</span> burden through induction of <span>APP</span>
amyloidogenic processing</strong>. (2021)</div>Tsatsanis, A.,
McCorkindale, A. N., Wong, B. X., Patrick, E., Ryan, T. M., Evans, R.
W., … Duce, J. A.<div class="csl-block"><em>Molecular Psychiatry</em>,
1–16 <a href="https://doi.org/10.1038/s41380-021-01248-1">https://doi.org/10.1038/s41380-021-01248-1</a></div>
</div>
<div id="ref-zolghadr_wnt-mediated_2021" class="csl-entry">
<div class="csl-block"><strong>A <span>Wnt</span>-mediated phenotype
switch along the epithelial–mesenchymal axis defines resistance and
invasion downstream of ionising radiation in oral squamous cell
carcinoma</strong>. (2021)</div>Zolghadr, F., Tse, N., Loka, D., Joun,
G., Meppat, S., Wan, V., … Seyedasli, N.<div class="csl-block"><em>British Journal of Cancer</em>, <em>124</em>(12),
1921–1933 <a href="https://doi.org/10.1038/s41416-021-01352-7">https://doi.org/10.1038/s41416-021-01352-7</a></div>
</div>
<div id="ref-ghazanfar_investigating_2020" class="csl-entry">
<div class="csl-block"><strong>Investigating higher-order interactions
in single-cell data with <span class="nocase">scHOT</span></strong>.
(2020)</div>Ghazanfar, S., Lin, Y., Su, X., Lin, D. M., Patrick, E.,
Han, Z.-G., … Yang, J. Y. H.<div class="csl-block"><em>Nature
Methods</em>, 1–8 <a href="https://doi.org/10.1038/s41592-020-0885-x">https://doi.org/10.1038/s41592-020-0885-x</a></div>
</div>
<div id="ref-kim_transcriptional_2020" class="csl-entry">
<div class="csl-block"><strong>Transcriptional network dynamics during
the progression of pluripotency revealed by integrative statistical
learning</strong>. (2020)</div>Kim, H. J., Osteil, P., Humphrey, S. J.,
Cinghu, S., Oldfield, A. J., Patrick, E., … Yang, P.<div class="csl-block"><em>Nucleic Acids Research</em>, <em>48</em>(4),
1828–1842 <a href="https://doi.org/10.1093/nar/gkz1179">https://doi.org/10.1093/nar/gkz1179</a></div>
</div>
<div id="ref-mcguire_mass_2020" class="csl-entry">
<div class="csl-block"><strong>Mass cytometry reveals immune signatures
associated with cytomegalovirus (<span>CMV</span>) control in recipients
of allogeneic haemopoietic stem cell transplant and
<span>CMV</span>-specific <span>T</span> cells</strong>.
(2020)</div>McGuire, H. M., Rizzetto, S., Withers, B. P., Clancy, L. E.,
Avdic, S., Stern, L., … Blyth, E.<div class="csl-block"><em>Clinical
& Translational Immunology</em>, <em>9</em>(7), e1149 <a href="https://doi.org/10.1002/cti2.1149">https://doi.org/10.1002/cti2.1149</a></div>
</div>
<div id="ref-patrick_deconvolving_2020" class="csl-entry">
<div class="csl-block"><strong>Deconvolving the contributions of
cell-type heterogeneity on cortical gene expression</strong>.
(2020)</div>Patrick, E., Taga, M., Ergun, A., Ng, B., Casazza, W.,
Cimpean, M., … Mostafavi, S.<div class="csl-block"><em>PLOS
Computational Biology</em>, <em>16</em>(8), e1008120 <a href="https://doi.org/10.1371/journal.pcbi.1008120">https://doi.org/10.1371/journal.pcbi.1008120</a></div>
</div>
<div id="ref-thejer_pgrmc1_2020" class="csl-entry">
<div class="csl-block"><strong><span>PGRMC1</span> phosphorylation
affects cell shape, motility, glycolysis, mitochondrial form and
function, and tumor growth</strong>. (2020)</div>Thejer, B. M.,
Adhikary, P. P., Kaur, A., Teakel, S. L., Van Oosterum, A., Seth, I., …
Cahill, M. A.<div class="csl-block"><em>BMC Molecular and Cell
Biology</em>, <em>21</em>(1), 24 <a href="https://doi.org/10.1186/s12860-020-00256-3">https://doi.org/10.1186/s12860-020-00256-3</a></div>
</div>
<div id="ref-baharlou_mass_2019" class="csl-entry">
<div class="csl-block"><strong>Mass <span>Cytometry</span>
<span>Imaging</span> for the <span>Study</span> of <span>Human</span>
<span>Diseases</span>—<span>Applications</span> and <span>Data</span>
<span>Analysis</span> <span>Strategies</span></strong>.
(2019)</div>Baharlou, H., Canete, N. P., Cunningham, A. L., Harman, A.
N., & Patrick, E.<div class="csl-block"><em>Frontiers in
Immunology</em>, <em>10</em> <a href="https://doi.org/10.3389/fimmu.2019.02657">https://doi.org/10.3389/fimmu.2019.02657</a></div>
</div>
<div id="ref-bertram_identification_2019" class="csl-entry">
<div class="csl-block"><strong>Identification of <span>HIV</span>
transmitting <span>CD11c</span> + human epidermal dendritic
cells</strong>. (2019)</div>Bertram, K. M., Botting, R. A., Baharlou,
H., Rhodes, J. W., Rana, H., Graham, J. D., … Harman, A. N.<div class="csl-block"><em>Nature Communications</em>, <em>10</em>(1), 1–15
<a href="https://doi.org/10.1038/s41467-019-10697-w">https://doi.org/10.1038/s41467-019-10697-w</a></div>
</div>
<div id="ref-ghazanfar_dcars_2019" class="csl-entry">
<div class="csl-block"><strong><span>DCARS</span>: Differential
correlation across ranked samples</strong>. (2019)</div>Ghazanfar, S.,
Strbenac, D., Ormerod, J. T., Yang, J. Y. H., & Patrick, E.<div class="csl-block"><em>Bioinformatics</em>, <em>35</em>(5), 823–829 <a href="https://doi.org/10.1093/bioinformatics/bty698">https://doi.org/10.1093/bioinformatics/bty698</a></div>
</div>
<div id="ref-hameed_brief_2019" class="csl-entry">
<div class="csl-block"><strong>Brief <span>Normothermic</span>
<span>Machine</span> <span>Perfusion</span> <span>Rejuvenates</span>
<span>Discarded</span> <span>Human</span> <span>Kidneys</span></strong>.
(2019)</div>Hameed, A. M., Lu, D. B., Patrick, E., Xu, B., Hu, M., Chew,
Y. V., … Pleass, H. C.<div class="csl-block"><em>Transplantation
Direct</em>, <em>5</em>(11) <a href="https://doi.org/10.1097/TXD.0000000000000944">https://doi.org/10.1097/TXD.0000000000000944</a></div>
</div>
<div id="ref-international_multiple_sclerosis_genetics_consortium_multiple_2019" class="csl-entry">
<div class="csl-block"><strong>Multiple sclerosis genomic map implicates
peripheral immune cells and microglia in susceptibility</strong>.
(2019)</div>International Multiple Sclerosis Genetics Consortium<div class="csl-block"><em>Science (New York, N.Y.)</em>, <em>365</em>(6460)
<a href="https://doi.org/10.1126/science.aav7188">https://doi.org/10.1126/science.aav7188</a></div>
</div>
<div id="ref-jimenez_vera_standardisation_2019" class="csl-entry">
<div class="csl-block"><strong>Standardisation of flow cytometry for
whole blood immunophenotyping of islet transplant and transplant
clinical trial recipients</strong>. (2019)</div>Jimenez Vera, E., Chew,
Y. V., Nicholson, L., Burns, H., Anderson, P., Chen, H.-T., … Hu, M.<div class="csl-block"><em>PLoS ONE</em>, <em>14</em>(5) <a href="https://doi.org/10.1371/journal.pone.0217163">https://doi.org/10.1371/journal.pone.0217163</a></div>
</div>
<div id="ref-lin_evaluating_2019" class="csl-entry">
<div class="csl-block"><strong>Evaluating stably expressed genes in
single cells</strong>. (2019)</div>Lin, Y., Ghazanfar, S., Strbenac, D.,
Wang, A., Patrick, E., Lin, D. M., … Yang, P.<div class="csl-block"><em>GigaScience</em>, <em>8</em>(9) <a href="https://doi.org/10.1093/gigascience/giz106">https://doi.org/10.1093/gigascience/giz106</a></div>
</div>
<div id="ref-ng_using_2019" class="csl-entry">
<div class="csl-block"><strong>Using <span>Transcriptomic</span>
<span>Hidden</span> <span>Variables</span> to <span>Infer</span>
<span>Context</span>-<span>Specific</span> <span>Genotype</span>
<span>Effects</span> in the <span>Brain</span></strong>. (2019)</div>Ng,
B., Casazza, W., Patrick, E., Tasaki, S., Novakovsky, G., Felsky, D., …
Mostafavi, S.<div class="csl-block"><em>The American Journal of Human
Genetics</em>, <em>105</em>(3), 562–572 <a href="https://doi.org/10.1016/j.ajhg.2019.07.016">https://doi.org/10.1016/j.ajhg.2019.07.016</a></div>
</div>
<div id="ref-tea_characterization_2019" class="csl-entry">
<div class="csl-block"><strong>Characterization of the human myelin
oligodendrocyte glycoprotein antibody response in
demyelination</strong>. (2019)</div>Tea, F., Lopez, J. A., Ramanathan,
S., Merheb, V., Lee, F. X. Z., Zou, A., … Australasian and New Zealand
MOG Study Group<div class="csl-block"><em>Acta Neuropathologica
Communications</em>, <em>7</em>(1), 145 <a href="https://doi.org/10.1186/s40478-019-0786-3">https://doi.org/10.1186/s40478-019-0786-3</a></div>
</div>
<div id="ref-bove_reproductive_2018" class="csl-entry">
<div class="csl-block"><strong>Reproductive period and epigenetic
modifications of the oxidative phosphorylation pathway in the human
prefrontal cortex</strong>. (2018)</div>*Bove, R. M., *Patrick, E.,
Aubin, C. M., Srivastava, G., Schneider, J. A., Bennett, D. A., …
Chibnik, L. B.<div class="csl-block"><em>PloS One</em>, <em>13</em>(7),
e0199073 <a href="https://doi.org/10.1371/journal.pone.0199073">https://doi.org/10.1371/journal.pone.0199073</a></div>
</div>
<div id="ref-felsky_polygenic_2018" class="csl-entry">
<div class="csl-block"><strong>Polygenic analysis of inflammatory
disease variants and effects on microglia in the aging brain</strong>.
(2018)</div>Felsky, D., Patrick, E., Schneider, J. A., Mostafavi, S.,
Gaiteri, C., Patsopoulos, N., … De Jager, P. L.<div class="csl-block"><em>Molecular Neurodegeneration</em>, <em>13</em>(1),
38 <a href="https://doi.org/10.1186/s13024-018-0272-6">https://doi.org/10.1186/s13024-018-0272-6</a></div>
</div>
<div id="ref-kozlowska_blood_2018" class="csl-entry">
<div class="csl-block"><strong>Blood <span>CRP</span> levels are
elevated in children and adolescents with functional neurological
symptom disorder</strong>. (2018)</div>Kozlowska, K., Chung, J.,
Cruickshank, B., McLean, L., Scher, S., Dale, R. C., … Patrick, E.<div class="csl-block"><em>European Child & Adolescent Psychiatry</em> <a href="https://doi.org/10.1007/s00787-018-1212-2">https://doi.org/10.1007/s00787-018-1212-2</a></div>
</div>
<div id="ref-mostafavi_molecular_2018" class="csl-entry">
<div class="csl-block"><strong>A molecular network of the aging human
brain provides insights into the pathology and cognitive decline of
<span>Alzheimer</span>’s disease</strong>. (2018)</div>Mostafavi, S.,
Gaiteri, C., Sullivan, S. E., White, C. C., Tasaki, S., Xu, J., … De
Jager, P. L.<div class="csl-block"><em>Nature Neuroscience</em>,
<em>21</em>(6), 811–819 <a href="https://doi.org/10.1038/s41593-018-0154-9">https://doi.org/10.1038/s41593-018-0154-9</a></div>
</div>
<div id="ref-olah_transcriptomic_2018" class="csl-entry">
<div class="csl-block"><strong>A transcriptomic atlas of aged human
microglia</strong>. (2018)</div>*Olah, M., *Patrick, E., Villani, A.-C.,
Xu, J., White, C. C., Ryan, K. J., … Bradshaw, E. M.<div class="csl-block"><em>Nature Communications</em>, <em>9</em>(1), 539 <a href="https://doi.org/10.1038/s41467-018-02926-5">https://doi.org/10.1038/s41467-018-02926-5</a></div>
</div>
<div id="ref-ramanathan_clinical_2018" class="csl-entry">
<div class="csl-block"><strong>Clinical course, therapeutic responses
and outcomes in relapsing <span>MOG</span> antibody-associated
demyelination</strong>. (2018)</div>Ramanathan, S., Mohammad, S.,
Tantsis, E., Nguyen, T. K., Merheb, V., Fung, V. S. C., … Australasian
and New Zealand MOG Study Group<div class="csl-block"><em>Journal of
Neurology, Neurosurgery, and Psychiatry</em>, <em>89</em>(2), 127–137 <a href="https://doi.org/10.1136/jnnp-2017-316880">https://doi.org/10.1136/jnnp-2017-316880</a></div>
</div>
<div id="ref-ng_xqtl_2017" class="csl-entry">
<div class="csl-block"><strong>An <span class="nocase">xQTL</span> map
integrates the genetic architecture of the human brain’s transcriptome
and epigenome</strong>. (2017)</div>Ng, B., White, C. C., Klein, H.-U.,
Sieberts, S. K., McCabe, C., Patrick, E., … De Jager, P. L.<div class="csl-block"><em>Nature Neuroscience</em>, <em>20</em>(10),
1418–1426 <a href="https://doi.org/10.1038/nn.4632">https://doi.org/10.1038/nn.4632</a></div>
</div>
<div id="ref-patrick_dissecting_2017" class="csl-entry">
<div class="csl-block"><strong>Dissecting the role of non-coding
<span>RNAs</span> in the accumulation of amyloid and tau
neuropathologies in <span>Alzheimer</span>’s disease</strong>.
(2017)</div>Patrick, E., Rajagopal, S., Wong, H.-K. A., McCabe, C., Xu,
J., Tang, A., … De Jager, P. L.<div class="csl-block"><em>Molecular
Neurodegeneration</em>, <em>12</em>(1), 51 <a href="https://doi.org/10.1186/s13024-017-0191-y">https://doi.org/10.1186/s13024-017-0191-y</a></div>
</div>
<div id="ref-patrick_multi-step_2017" class="csl-entry">
<div class="csl-block"><strong>A multi-step classifier addressing cohort
heterogeneity improves performance of prognostic biomarkers in three
cancer types</strong>. (2017)</div>Patrick, E., Schramm, S.-J., Ormerod,
J. T., Scolyer, R. A., Mann, G. J., Mueller, S., & Yang, J. Y.
H.<div class="csl-block"><em>Oncotarget</em>, <em>8</em>(2), 2807–2815
<a href="https://doi.org/10.18632/oncotarget.13203">https://doi.org/10.18632/oncotarget.13203</a></div>
</div>
<div id="ref-wong_taking_2017" class="csl-entry">
<div class="csl-block"><strong>Taking <span>Kidneys</span> for
<span>Granted</span>? <span>Time</span> to <span>Reflect</span> on the
<span>Choices</span> <span>We</span> <span>Make</span></strong>.
(2017)</div>Wong, G., Howell, M., Patrick, E., & Yang, J. Y. H.<div class="csl-block"><em>Transplantation</em>, <em>101</em>(12), 2812–2813
<a href="https://doi.org/10.1097/TP.0000000000001850">https://doi.org/10.1097/TP.0000000000001850</a></div>
</div>
<div id="ref-yang_kinasepa_2016" class="csl-entry">
<div class="csl-block"><strong><span>KinasePA</span>:
<span>Phosphoproteomics</span> data annotation using hypothesis driven
kinase perturbation analysis</strong>. (2016)</div>*Yang, P., *Patrick,
E., Humphrey, S. J., Ghazanfar, S., James, D. E., Jothi, R., & Yang,
J. Y. H.<div class="csl-block"><em>Proteomics</em>, <em>16</em>(13),
1868–1871 <a href="https://doi.org/10.1002/pmic.201600068">https://doi.org/10.1002/pmic.201600068</a></div>
</div>
<div id="ref-kember_phonological_2015" class="csl-entry">
<div class="csl-block"><strong>Phonological <span>Encoding</span> in
<span>Mandarin</span> <span>Chinese</span>: <span>Evidence</span> from
<span>Tongue</span> <span>Twisters</span></strong>. (2015)</div>Kember,
H., Croot, K., & Patrick, E.<div class="csl-block"><em>Language and
Speech</em>, <em>58</em>(Pt 4), 417–440 <a href="https://doi.org/10.1177/0023830914562654">https://doi.org/10.1177/0023830914562654</a></div>
</div>
<div id="ref-patrick_inferring_2015" class="csl-entry">
<div class="csl-block"><strong>Inferring data-specific
micro-<span>RNA</span> function through the joint ranking of
micro-<span>RNA</span> and pathways from matched micro-<span>RNA</span>
and gene expression data</strong>. (2015)</div>Patrick, E., Buckley, M.,
Müller, S., Lin, D. M., & Yang, J. Y. H.<div class="csl-block"><em>Bioinformatics</em>, <em>31</em>(17), 2822–2828 <a href="https://doi.org/10.1093/bioinformatics/btv220">https://doi.org/10.1093/bioinformatics/btv220</a></div>
</div>
<div id="ref-tembe_microrna_2015" class="csl-entry">
<div class="csl-block"><strong><span>MicroRNA</span> and <span class="nocase">mRNA</span> expression profiling in metastatic melanoma
reveal associations with <span>BRAF</span> mutation and patient
prognosis</strong>. (2015)</div>Tembe, V., Schramm, S.-J., Stark, M. S.,
Patrick, E., Jayaswal, V., Tang, Y. H., … Mann, G. J.<div class="csl-block"><em>Pigment Cell & Melanoma Research</em>,
<em>28</em>(3), 254–266 <a href="https://doi.org/10.1111/pcmr.12343">https://doi.org/10.1111/pcmr.12343</a></div>
</div>
<div id="ref-oconnor_hepatic_2014" class="csl-entry">
<div class="csl-block"><strong>Hepatic metallothionein expression in
chronic hepatitis <span>C</span> virus infection is <span>IFNL3</span>
genotype-dependent</strong>. (2014)</div>O’Connor, K. S., Parnell, G.,
Patrick, E., Ahlenstiel, G., Suppiah, V., Poorten, D. van der, … Booth,
D. R.<div class="csl-block"><em>Genes and Immunity</em>, <em>15</em>(2),
88–94 <a href="https://doi.org/10.1038/gene.2013.66">https://doi.org/10.1038/gene.2013.66</a></div>
</div>
<div id="ref-sparks_detection_2014" class="csl-entry">
<div class="csl-block"><strong>Detection of <span>Multiple</span>
<span>Outbreaks</span> <span>Using</span>
<span>Spatio</span>-<span>Temporal</span>
<span>EWMA</span>-<span>Ordered</span> <span>Statistics</span></strong>.
(2014)</div>Sparks, R., & Patrick, E.<div class="csl-block"><em>Communications in Statistics - Simulation and
Computation</em>, <em>43</em>(10), 2678–2701 <a href="https://doi.org/10.1080/03610918.2012.758741">https://doi.org/10.1080/03610918.2012.758741</a></div>
</div>
<div id="ref-yang_direction_2014" class="csl-entry">
<div class="csl-block"><strong>Direction pathway analysis of large-scale
proteomics data reveals novel features of the insulin action
pathway</strong>. (2014)</div>*Yang, P., *Patrick, E., Tan, S.-X.,
Fazakerley, D. J., Burchfield, J., Gribben, C., … Yang, J. Y. H.<div class="csl-block"><em>Bioinformatics</em>, <em>30</em>(6), 808–814 <a href="https://doi.org/10.1093/bioinformatics/btt616">https://doi.org/10.1093/bioinformatics/btt616</a></div>
</div>
<div id="ref-patrick_improved_2013" class="csl-entry">
<div class="csl-block"><strong>Improved moderation for gene-wise
variance estimation in <span>RNA</span>-<span>Seq</span> via the
exploitation of external information</strong>. (2013)</div>Patrick, E.,
Buckley, M., Lin, D. M., & Yang, J. Y. H.<div class="csl-block"><em>BMC Genomics</em>, <em>14 Suppl 1</em>, S9 <a href="https://doi.org/10.1186/1471-2164-14-S1-S9">https://doi.org/10.1186/1471-2164-14-S1-S9</a></div>
</div>
<div id="ref-patrick_estimation_2013" class="csl-entry">
<div class="csl-block"><strong>Estimation of data-specific constitutive
exons with <span>RNA</span>-<span>Seq</span> data</strong>.
(2013)</div>Patrick, E., Buckley, M., & Yang, J. Y. H.<div class="csl-block"><em>BMC Bioinformatics</em>, <em>14</em>, 31 <a href="https://doi.org/10.1186/1471-2105-14-31">https://doi.org/10.1186/1471-2105-14-31</a></div>
</div>
<div id="ref-tonks_impaired_2013" class="csl-entry">
<div class="csl-block"><strong>Impaired <span>Akt</span> phosphorylation
in insulin-resistant human muscle is accompanied by selective and
heterogeneous downstream defects</strong>. (2013)</div>Tonks, K. T., Ng,
Y., Miller, S., Coster, A. C. F., Samocha-Bonet, D., Iseli, T. J., …
Greenfield, J. R.<div class="csl-block"><em>Diabetologia</em>,
<em>56</em>(4), 875–885 <a href="https://doi.org/10.1007/s00125-012-2811-y">https://doi.org/10.1007/s00125-012-2811-y</a></div>
</div>
</div>
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