From c3d83369c065b3b9ecda7414b586463c7ae0c6e7 Mon Sep 17 00:00:00 2001 From: Young Joon Lee Date: Sun, 5 May 2024 06:38:05 +0900 Subject: [PATCH] feat: initial version --- .copier-config.yaml | 48 + .copier-hyfi-config.yaml | 7 + .copierignore | 4 + .editorconfig | 24 + .envrc | 15 + .gitattributes | 1 + .github/dependabot.yaml | 27 + .github/labels.yaml | 66 + .github/release.yaml | 20 + .github/workflows/deploy-docs.yaml | 43 + .github/workflows/lint_and_test.yaml | 78 + .../workflows/prerelease-to-test-pypi.yaml | 46 + .github/workflows/prerelease.yaml | 53 + .github/workflows/release-patch.yaml | 51 + .github/workflows/release-test.yaml | 44 + .github/workflows/release.yaml | 58 + .gitignore | 34 + .pre-commit-config.yaml | 55 + .readthedocs.yaml | 25 + .tasks-extra.toml | 20 + .tasks.toml | 124 + CHANGELOG.md | 1 + CODE_OF_CONDUCT.md | 132 + CONTRIBUTING.md | 55 + LICENSE | 21 + Makefile | 122 + README.md | 49 +- book/_config.yml | 103 + book/_toc.yml | 9 + book/api.rst | 16 + book/assets/assets/extra/.gitkeep | 0 book/assets/extra/.gitkeep | 0 book/examples.md | 34 + book/index.md | 55 + book/references.bib | 3 + book/requirements.txt | 12 + book/usage.md | 1 + codecov.yml | 12 + poetry.lock | 3036 +++++++++++++++++ pyproject.toml | 119 + src/hylpg/__cli__.py | 12 + src/hylpg/__init__.py | 28 + src/hylpg/_version.py | 1 + src/hylpg/conf/__init__.py | 0 src/hylpg/conf/about/hylpg.yaml | 6 + src/hylpg/py.typed | 0 tests/hylpg/test_cli.py | 22 + tests/hylpg/test_init.py | 12 + tests/notebook/tests.ipynb | 198 ++ 49 files changed, 4901 insertions(+), 1 deletion(-) create mode 100644 .copier-config.yaml create mode 100644 .copier-hyfi-config.yaml create mode 100644 .copierignore create mode 100644 .editorconfig create mode 100644 .envrc create mode 100644 .gitattributes create mode 100644 .github/dependabot.yaml create mode 100644 .github/labels.yaml create mode 100644 .github/release.yaml create mode 100644 .github/workflows/deploy-docs.yaml create mode 100644 .github/workflows/lint_and_test.yaml create mode 100644 .github/workflows/prerelease-to-test-pypi.yaml create mode 100644 .github/workflows/prerelease.yaml create mode 100644 .github/workflows/release-patch.yaml create mode 100644 .github/workflows/release-test.yaml create mode 100644 .github/workflows/release.yaml create mode 100644 .gitignore create mode 100644 .pre-commit-config.yaml create mode 100644 .readthedocs.yaml create mode 100644 .tasks-extra.toml create mode 100644 .tasks.toml create mode 100644 CHANGELOG.md create mode 100644 CODE_OF_CONDUCT.md create mode 100644 CONTRIBUTING.md create mode 100644 LICENSE create mode 100644 Makefile create mode 100644 book/_config.yml create mode 100644 book/_toc.yml create mode 100644 book/api.rst create mode 100644 book/assets/assets/extra/.gitkeep create mode 100644 book/assets/extra/.gitkeep create mode 100644 book/examples.md create mode 100644 book/index.md create mode 100644 book/references.bib create mode 100644 book/requirements.txt create mode 100644 book/usage.md create mode 100644 codecov.yml create mode 100644 poetry.lock create mode 100644 pyproject.toml create mode 100644 src/hylpg/__cli__.py create mode 100644 src/hylpg/__init__.py create mode 100644 src/hylpg/_version.py create mode 100644 src/hylpg/conf/__init__.py create mode 100644 src/hylpg/conf/about/hylpg.yaml create mode 100644 src/hylpg/py.typed create mode 100644 tests/hylpg/test_cli.py create mode 100644 tests/hylpg/test_init.py create mode 100644 tests/notebook/tests.ipynb diff --git a/.copier-config.yaml b/.copier-config.yaml new file mode 100644 index 0000000..f078083 --- /dev/null +++ b/.copier-config.yaml @@ -0,0 +1,48 @@ +# Changes here will be overwritten by Copier; do NOT edit manually +_commit: v0.14.3 +_src_path: gh:entelecheia/hyperfast-python-template +author: Young Joon Lee +build_and_release: true +code_template_answers_file: .copier-hyfi-config.yaml +code_template_source: gh:entelecheia/hyfi-template +codecov_graph_token: wwvt5uOSYi +copyright_year: 2024 +documentaion_tool: jupyter-book +documentation_url: https://hyfi-lpg.entelecheia.ai +email: entelecheia@hotmail.com +favicon_path: https://assets.entelecheia.ai/favicon.png +friendly_name: HyFI-LPG +github_repo_name: hyfi-lpg +github_username: entelecheia +google_analytics_id: G-VMN7QWCMSV +logo_path: '' +main_branch: main +open_link: false +package_name: hylpg +package_scripts: +- hylpg = 'hylpg.__cli__:main' +poe_task_files: +- .tasks.toml +- .tasks-extra.toml +project_description: 'HyFI-LPG is a powerful plugin for the HyFI framework, designed + to streamline the integration and utilization of large language models (LLMs) + in text processing and analysis tasks. This plugin aims to provide researchers + and practitioners with a seamless and efficient workflow, enabling them to harness + the full potential of LLMs for various applications. + + + With HyFI-LPG, users can easily incorporate state-of-the-art language models into + their projects, leveraging their advanced capabilities for natural language understanding, + generation, and manipulation. The plugin offers a user-friendly interface and + a comprehensive set of tools and utilities, making it accessible to both novice + and experienced users.' +project_license: MIT +project_name: hyfi-lpg +project_short_description: HyFI-LPG is a powerful HyFI plugin for seamless integration + and utilization of large language models in text processing and analysis tasks, + enabling efficient workflows for researchers and practitioners. +upload_to_release: true +upload_to_repository: true +use_launch_buttons: true +use_source_code_skeleton: true + diff --git a/.copier-hyfi-config.yaml b/.copier-hyfi-config.yaml new file mode 100644 index 0000000..97c00f7 --- /dev/null +++ b/.copier-hyfi-config.yaml @@ -0,0 +1,7 @@ +# Changes here will be overwritten by Copier; do NOT edit manually +_commit: v0.7.0 +_src_path: gh:entelecheia/hyfi-template +open_link: false +package_name: hylpg +project_name: hyfi-lpg + diff --git a/.copierignore b/.copierignore new file mode 100644 index 0000000..9bb30ca --- /dev/null +++ b/.copierignore @@ -0,0 +1,4 @@ +.copierignore +.tasks-extra.toml +CHANGELOG.md +pyproject.toml diff --git a/.editorconfig b/.editorconfig new file mode 100644 index 0000000..04a3f23 --- /dev/null +++ b/.editorconfig @@ -0,0 +1,24 @@ +# Check http://editorconfig.org for more information + +# top-most .editorconfig file +root = true + +# Unix-style newlines with a newline ending every file +[*] +end_of_line = lf +insert_final_newline = true +charset = utf-8 +trim_trailing_whitespace = true +indent_style = space + +[*.py] +profile = black + +[Makefile] +indent_style = tab + +[*.md] +trim_trailing_whitespace = false + +[*.{yaml,yml}] +indent_size = 2 diff --git a/.envrc b/.envrc new file mode 100644 index 0000000..889f02b --- /dev/null +++ b/.envrc @@ -0,0 +1,15 @@ +#!/usr/bin/env bash +export PYTHON_KEYRING_BACKEND="keyring.backends.null.Keyring" +export PROJECT_NAME="hyfi-lpg" +PROJECT_ROOT="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" +export PROJECT_ROOT +VIRTUAL_ENV="${WORKON_HOME}/${PROJECT_NAME}" +if [ -e "${VIRTUAL_ENV}/bin/activate" ]; then + # shellcheck disable=SC1091 + source "${VIRTUAL_ENV}/bin/activate" +else + python3 -m venv "${VIRTUAL_ENV}" + # shellcheck disable=SC1091 + source "${VIRTUAL_ENV}/bin/activate" + pip install --upgrade pip setuptools wheel +fi diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..6313b56 --- /dev/null +++ b/.gitattributes @@ -0,0 +1 @@ +* text=auto eol=lf diff --git a/.github/dependabot.yaml b/.github/dependabot.yaml new file mode 100644 index 0000000..ee28f46 --- /dev/null +++ b/.github/dependabot.yaml @@ -0,0 +1,27 @@ +# To get started with Dependabot version updates, you'll need to specify which +# package ecosystems to update and where the package manifests are located. +# Please see the documentation for all configuration options: +# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates + +version: 2 +updates: + - package-ecosystem: "github-actions" + directory: "/" + schedule: + interval: "daily" + time: "03:00" + timezone: "Asia/Seoul" + labels: + - ":game_die: dependencies" + - ":robot: bot" + - package-ecosystem: "pip" + directory: "/" + schedule: + interval: "daily" + time: "03:00" + timezone: "Asia/Seoul" + allow: + - dependency-type: "production" + labels: + - ":game_die: dependencies" + - ":robot: bot" diff --git a/.github/labels.yaml b/.github/labels.yaml new file mode 100644 index 0000000..f7f83aa --- /dev/null +++ b/.github/labels.yaml @@ -0,0 +1,66 @@ +--- +# Labels names are important as they are used by Release Drafter to decide +# regarding where to record them in changelog or if to skip them. +# +# The repository labels will be automatically configured using this file and +# the GitHub Action https://github.com/marketplace/actions/github-labeler. +- name: breaking + description: Breaking Changes + color: bfd4f2 +- name: bug + description: Something isn't working + color: d73a4a +- name: build + description: Build System and Dependencies + color: bfdadc +- name: ci + description: Continuous Integration + color: 4a97d6 +- name: dependencies + description: Pull requests that update a dependency file + color: 0366d6 +- name: documentation + description: Improvements or additions to documentation + color: 0075ca +- name: duplicate + description: This issue or pull request already exists + color: cfd3d7 +- name: enhancement + description: New feature or request + color: a2eeef +- name: github_actions + description: Pull requests that update Github_actions code + color: "000000" +- name: good first issue + description: Good for newcomers + color: 7057ff +- name: help wanted + description: Extra attention is needed + color: 008672 +- name: invalid + description: This doesn't seem right + color: e4e669 +- name: performance + description: Performance + color: "016175" +- name: python + description: Pull requests that update Python code + color: 2b67c6 +- name: question + description: Further information is requested + color: d876e3 +- name: refactoring + description: Refactoring + color: ef67c4 +- name: removal + description: Removals and Deprecations + color: 9ae7ea +- name: style + description: Style + color: c120e5 +- name: testing + description: Testing + color: b1fc6f +- name: wontfix + description: This will not be worked on + color: ffffff diff --git a/.github/release.yaml b/.github/release.yaml new file mode 100644 index 0000000..bdf1094 --- /dev/null +++ b/.github/release.yaml @@ -0,0 +1,20 @@ +--- +changelog: + exclude: + labels: + - ignore-for-release + authors: + - octocat + categories: + - title: Breaking Changes 🛠 + labels: + - breaking + - title: Exciting New Features 🎉 + labels: + - feature + - title: Fixes 🔧 + labels: + - fix + - title: Other Changes + labels: + - "*" diff --git a/.github/workflows/deploy-docs.yaml b/.github/workflows/deploy-docs.yaml new file mode 100644 index 0000000..8892af4 --- /dev/null +++ b/.github/workflows/deploy-docs.yaml @@ -0,0 +1,43 @@ +--- +name: deploy-docs +on: + workflow_call: + workflow_dispatch: + push: + branches: + - main + # Paths can be used to only trigger actions when you have edited certain files, such as a file within the /docs directory + paths: + - "book/**" + - ".github/workflows/deploy-docs.yaml" + +permissions: + contents: write + +jobs: + deploy: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + - uses: actions/setup-python@v5 + with: + python-version: 3.9 + + # install the source code + - name: Install the source code + run: pip install . + + # Build the book + - name: Build the book + run: | + pip install -r book/requirements.txt + jupyter-book build book + + # Deploy the book's HTML to gh-pages branch + - name: GitHub Pages action + uses: peaceiris/actions-gh-pages@v4 + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + publish_dir: book/_build/html + cname: hyfi-lpg.entelecheia.ai diff --git a/.github/workflows/lint_and_test.yaml b/.github/workflows/lint_and_test.yaml new file mode 100644 index 0000000..7edc9a9 --- /dev/null +++ b/.github/workflows/lint_and_test.yaml @@ -0,0 +1,78 @@ +--- +name: lint & test + +on: + workflow_call: + workflow_dispatch: + push: + branches: + - "main" + paths: + - "src/**" + - "tests/**" + +jobs: + build: + # Name the Job + name: test-code-base + # Set the agent to run on + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-latest] + python-version: [3.9] + + steps: + # Checkout the code base # + - name: Checkout Code + uses: actions/checkout@v4 + with: + fetch-depth: 0 + + # install poetry + - name: Install poetry + run: pipx install poetry>=1.3.2 + + # set up python + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + cache: "poetry" + + # initialize + - name: Initialize + run: make initialize + + # install dependencies + - name: Install dependencies for linters + run: poe install-dev + + # run linters + - name: Run linters + run: | + set -o pipefail + poe lint + + # run unit tests + - name: Run unit-tests + run: | + set -o pipefail + poe tests-cov-fail + + # add content to GitHub summary + - name: Pytest coverage GitHub summary + run: | + set -o pipefail + echo '# Coverage report' >> $GITHUB_STEP_SUMMARY + echo '```' >> $GITHUB_STEP_SUMMARY + cat tests/pytest-coverage.txt >> $GITHUB_STEP_SUMMARY + echo '```' >> $GITHUB_STEP_SUMMARY + echo '\n\n\n' + + - name: Upload coverage reports to Codecov + uses: codecov/codecov-action@v4 + with: + token: ${{ secrets.CODECOV_TOKEN }} # required + fail_ci_if_error: false # optional (default = false) + verbose: true # optional (default = false) diff --git a/.github/workflows/prerelease-to-test-pypi.yaml b/.github/workflows/prerelease-to-test-pypi.yaml new file mode 100644 index 0000000..ca9db99 --- /dev/null +++ b/.github/workflows/prerelease-to-test-pypi.yaml @@ -0,0 +1,46 @@ +--- +name: semantic-prerelease-to-test-pypi + +on: + workflow_call: + workflow_dispatch: + +permissions: + contents: write + issues: write + pull-requests: write + +jobs: + build: + # Name the Job + name: prerelease + # Set the agent to run on + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-latest] + python-version: [3.9] + + # Load all steps # + steps: + # Checkout the code base # + - name: Checkout Code + uses: actions/checkout@v4 + with: + fetch-depth: 0 + + # set env variable + - name: Set env variable + run: echo "BRANCH=${GITHUB_REF#refs/heads/}" >> $GITHUB_ENV + + # semantic release + - name: Python Semantic Release to Test PyPI + uses: relekang/python-semantic-release@master + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + repository_username: __token__ + repository_password: ${{ secrets.TEST_PYPI_API_TOKEN }} + additional_options: --prerelease --verbosity=DEBUG --define=branch=${{ env.BRANCH }} + env: + REPOSITORY_URL: https://test.pypi.org/legacy/ + diff --git a/.github/workflows/prerelease.yaml b/.github/workflows/prerelease.yaml new file mode 100644 index 0000000..0e33c84 --- /dev/null +++ b/.github/workflows/prerelease.yaml @@ -0,0 +1,53 @@ +--- +name: semantic-prerelease + +on: + workflow_call: + workflow_dispatch: + push: + branches: + - pre* + - beta* + - alpha* + - rc* + - nigtly* + paths: + - 'src/**' + - 'pyproject.toml' + +permissions: + contents: write + issues: write + pull-requests: write + +jobs: + build: + # Name the Job + name: prerelease + # Set the agent to run on + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-latest] + python-version: [3.9] + + # Load all steps # + steps: + # Checkout the code base # + - name: Checkout Code + uses: actions/checkout@v4 + with: + fetch-depth: 0 + + # set env variable + - name: Set env variable + run: echo "BRANCH=${GITHUB_REF#refs/heads/}" >> $GITHUB_ENV + + # semantic release + - name: Python Semantic Release to PyPI + uses: relekang/python-semantic-release@master + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + repository_username: __token__ + repository_password: ${{ secrets.PYPI_API_TOKEN }} + additional_options: --prerelease --verbosity=DEBUG --define=branch=${{ env.BRANCH }} diff --git a/.github/workflows/release-patch.yaml b/.github/workflows/release-patch.yaml new file mode 100644 index 0000000..85bfb21 --- /dev/null +++ b/.github/workflows/release-patch.yaml @@ -0,0 +1,51 @@ +--- +name: semantic-release-patch + +on: + workflow_call: + workflow_dispatch: + push: + branches: + - patch* + - hotfix* + paths: + - 'src/**' + - 'pyproject.toml' + +permissions: + contents: write + issues: write + pull-requests: write + +jobs: + build: + # Name the Job + name: semantic-release-patch + # Set the agent to run on + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-latest] + python-version: [3.9] + + steps: + # Checkout the code base # + - name: Checkout Code + uses: actions/checkout@v4 + with: + fetch-depth: 0 + + # set env variable + - name: Set env variable + run: echo "BRANCH=${GITHUB_REF#refs/heads/}" >> $GITHUB_ENV + + # semantic release + - name: Python Semantic Release to PyPI + uses: relekang/python-semantic-release@master + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + repository_username: __token__ + repository_password: ${{ secrets.PYPI_API_TOKEN }} + additional_options: --patch --verbosity=DEBUG --define=branch=${{ env.BRANCH }} + env: + REPOSITORY_URL: https://test.pypi.org/legacy/ diff --git a/.github/workflows/release-test.yaml b/.github/workflows/release-test.yaml new file mode 100644 index 0000000..03d59dd --- /dev/null +++ b/.github/workflows/release-test.yaml @@ -0,0 +1,44 @@ +--- +name: semantic-release-test + +on: + workflow_call: + workflow_dispatch: + +permissions: + contents: write + issues: write + pull-requests: write + +jobs: + build: + # Name the Job + name: semantic-release-test + # Set the agent to run on + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-latest] + python-version: [3.9] + + steps: + # Checkout the code base # + - name: Checkout Code + uses: actions/checkout@v4 + with: + fetch-depth: 0 + + # set env variable + - name: Set env variable + run: echo "BRANCH=${GITHUB_REF#refs/heads/}" >> $GITHUB_ENV + + # semantic release + - name: Python Semantic Release to PyPI + uses: relekang/python-semantic-release@master + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + repository_username: __token__ + repository_password: ${{ secrets.PYPI_API_TOKEN }} + additional_options: --noop --verbosity=DEBUG --define=branch=${{ env.BRANCH }} + env: + REPOSITORY_URL: https://test.pypi.org/legacy/ diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml new file mode 100644 index 0000000..6ce32fd --- /dev/null +++ b/.github/workflows/release.yaml @@ -0,0 +1,58 @@ +--- +name: semantic-release + +on: + workflow_call: + workflow_dispatch: + push: + branches: + - release* + paths: + - 'src/**' + - 'pyproject.toml' + +permissions: + contents: write + issues: write + pull-requests: write + +jobs: + build: + # Name the Job + name: semantic-release + # Set the agent to run on + runs-on: ${{ matrix.os }} + strategy: + matrix: + os: [ubuntu-latest] + python-version: [3.9] + + # Load all steps # + steps: + # Checkout the code base # + - name: Checkout Code + uses: actions/checkout@v4 + with: + fetch-depth: 0 + + # set env variable + - name: Set env variable + run: echo "BRANCH=${GITHUB_REF#refs/heads/}" >> $GITHUB_ENV + + # install poetry + - name: Install poetry + run: pipx install poetry>=1.3.2 + + # install dependencies + - name: Install dependencies + run: poetry install --with dev + + - name: Python Semantic Release to PyPI + run: | + git config --global user.name "GitHub Actions" + git config --global user.email "actions@github.com" + poetry run semantic-release publish --verbosity=DEBUG --define=branch=${{ env.BRANCH }} + env: + GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} + REPOSITORY_USERNAME: __token__ + REPOSITORY_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..f835b95 --- /dev/null +++ b/.gitignore @@ -0,0 +1,34 @@ +# hypothesis: https://github.com/HypothesisWorks/hypothesis +.hypothesis/ +.vscode/ + +# Ignore node_modules directory +node_modules/ + +# Jupyter Notebook +_build/ +_autosummary/ + +# MkDocs +site/ + +# Python +*.py[cod] +__pycache__/ +dist/ +.tox/ +*.egg-info/ +*.egg +pytest_cache/ +pytest.xml +.mypy_cache/ + +# Coverage +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +htmlcov/ +pytest-coverage.* diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..7ed3ccb --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,55 @@ +# See https://pre-commit.com for more information +# See https://pre-commit.com/hooks.html for more hooks +default_language_version: + python: python3 +default_install_hook_types: [commit-msg, pre-commit] +default_stages: [commit, manual] +fail_fast: true +minimum_pre_commit_version: "1.4.3" +repos: + - repo: meta + hooks: + - id: check-useless-excludes + - repo: https://github.com/pre-commit/pygrep-hooks + rev: v1.10.0 + hooks: + - id: python-check-blanket-noqa + - id: python-check-blanket-type-ignore + - id: python-check-mock-methods + - id: python-no-eval + - id: python-no-log-warn + - id: text-unicode-replacement-char + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.4.0 + hooks: + - id: trailing-whitespace + types: [python] + - id: end-of-file-fixer + types: [python] + - id: check-yaml + - id: check-json + - id: check-added-large-files + # Prevent committing inline conflict markers + - id: check-merge-conflict + args: [--assume-in-merge] + - repo: local + hooks: + - id: commitizen + name: commitizen check + entry: cz check + args: [--allow-abort, --commit-msg-file] + stages: [commit-msg] + language: system + require_serial: true + - id: black + name: black + entry: black + require_serial: true + language: system + types: [python] + # Prevent committing .rej files + - id: forbidden-files + name: forbidden files + entry: found Copier update rejection files; review them and remove them + language: fail + files: "\\.rej$" \ No newline at end of file diff --git a/.readthedocs.yaml b/.readthedocs.yaml new file mode 100644 index 0000000..90920e7 --- /dev/null +++ b/.readthedocs.yaml @@ -0,0 +1,25 @@ +# .readthedocs.yaml +# Read the Docs configuration file +# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details + +# Required +version: 2 + +# Set the version of Python and other tools you might need +build: + os: ubuntu-22.04 + tools: + python: "3.10" + jobs: + pre_build: + # Generate on-the-fly Sphinx configuration from Jupyter Book's _config.yml + - "jupyter-book config sphinx book/" + +formats: + - pdf + - epub + +# Optionally declare the Python requirements required to build your docs +python: + install: + - requirements: book/requirements.txt diff --git a/.tasks-extra.toml b/.tasks-extra.toml new file mode 100644 index 0000000..58c4e84 --- /dev/null +++ b/.tasks-extra.toml @@ -0,0 +1,20 @@ +[tool.poe.tasks.add-editable-hyfi] +shell = """ + poetry remove hyfi + poetry add --group dev --editable ../hyfi +""" +help = "Add hyfi as an editable dependency" + +[tool.poe.tasks.apply-hyfi-template] +cmd = """ + copier --answers-file .copier-hyfi-config.yaml gh:entelecheia/hyfi-template . +""" +use_exec = true +help = "Apply hyfi template" + +[tool.poe.tasks.copy-hyfi-config] +shell = """ + poetry add hyfi@latest + poetry run hyfi cmd=copy_conf copier.dst_path=src/hylpg/conf copier.exclude='**/*/about/__init__.yaml' copier.overwrite=True +""" +help = "Copy hyfi conf to src/hylpg/conf" diff --git a/.tasks.toml b/.tasks.toml new file mode 100644 index 0000000..a8dc1e0 --- /dev/null +++ b/.tasks.toml @@ -0,0 +1,124 @@ +[tool.poe.tasks.format-black] +cmd = "black ." +help = "format code with black" + +[tool.poe.tasks.format-isort] +cmd = "isort ." +help = "sort imports with isort" + +[tool.poe.tasks.format] +sequence = ["format-black", "format-isort"] +help = "format code with black and isort" + +[tool.poe.tasks.lint-black] +cmd = "black --check --diff ." +help = "check code formatting with black" + +[tool.poe.tasks.lint-flake8] +cmd = "flake8 ." +help = "check code style with flake8" + +[tool.poe.tasks.lint-isort] +cmd = "isort --check-only --diff ." +help = "check import sorting with isort" + +[tool.poe.tasks.lint-mypy] +cmd = "mypy --config-file project.toml ." +help = "check types with mypy" + +[tool.poe.tasks.lint-mypy-reports] +cmd = "mypy --config-file project.toml . --html-report ./tests/mypy-report" +help = "generate an HTML report of the type (mypy) checker" + +[tool.poe.tasks.lint] +sequence = ["lint-black", "lint-flake8", "lint-isort"] +help = "check code style with flake8, black, and isort" + +[tool.poe.tasks.tests] +cmd = "pytest --doctest-modules" +help = "run tests with pytest" + +[tool.poe.tasks.tests-cov] +cmd = "pytest --cov=src --cov-report=xml" +help = "run tests with pytest and generate a coverage report" + +[tool.poe.tasks.tests-cov-fail] +shell = "pytest --cov=src --cov-report=xml --cov-fail-under=50 --junitxml=tests/pytest.xml | tee tests/pytest-coverage.txt" +help = "run tests with pytest and generate a coverage report, fail if coverage is below 80%" + +[tool.poe.tasks.clean-cov] +cmd = "rm -rf .coverage* tests/htmlcov tests/pytest.xml tests/pytest-coverage.txt" +help = "remove coverage reports" + +[tool.poe.tasks.clean-pycache] +cmd = "find . -type d -name __pycache__ -exec rm -rf {} +" +help = "remove __pycache__ directories" + +[tool.poe.tasks.clean-build] +cmd = "rm -rf build dist *.egg-info" +help = "remove build/python artifacts" + +[tool.poe.tasks.clean-docs] +cmd = "rm -rf book/_build docs/_build _site" +help = "remove documentation artifacts" + +[tool.poe.tasks.clean] +sequence = ["clean-cov", "clean-pycache", "clean-build", "clean-docs"] +help = "remove build artifacts and coverage reports" + +[tool.poe.tasks.run] +cmd = "hylpg" +help = "run the main program" + +[tool.poe.tasks.build] +cmd = "poetry build" +help = "build the package" + +[tool.poe.tasks.install-ghp-import] +cmd = "pipx install ghp-import" +help = "install ghp-import" + +[tool.poe.tasks.install-jupyter-book-pipx] +shell = """ + pipx install jupyter-book + pipx inject jupyter-book $(awk '{if(!/^ *#/ && NF) print}' book/requirements.txt) +""" +help = "install jupyter-book with pipx" + +[tool.poe.tasks.install-jupyter-book] +shell = """ + pip install -r book/requirements.txt +""" +help = "install jupyter-book" + +[tool.poe.tasks.book-build] +cmd = "jupyter-book build book" +help = "build the book" + +[tool.poe.tasks.book-build-all] +cmd = "jupyter-book build book --all" +help = "build the book with all outputs" + +[tool.poe.tasks.book-publish] +cmd = "ghp-import -n -p -f book/_build/html" +help = "publish the book" + +[tool.poe.tasks.install] +cmd = "poetry install --without dev" +help = "install dependencies" + +[tool.poe.tasks.install-dev] +cmd = "poetry install --with dev" +help = "install dev dependencies" + +[tool.poe.tasks.update] +cmd = "poetry update" +help = "update dependencies" + +[tool.poe.tasks.lock] +cmd = "poetry lock" +help = "lock dependencies" + +[tool.poe.tasks.codecov-validate] +cmd = "curl -X POST --data-binary @codecov.yml https://codecov.io/validate" +help = "Validate codecov.yml" diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..61f3ce4 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1 @@ + diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md new file mode 100644 index 0000000..f7e1c06 --- /dev/null +++ b/CODE_OF_CONDUCT.md @@ -0,0 +1,132 @@ +# Contributor Covenant Code of Conduct + +## Our Pledge + +We as members, contributors, and leaders pledge to make participation in our +community a harassment-free experience for everyone, regardless of age, body +size, visible or invisible disability, ethnicity, sex characteristics, gender +identity and expression, level of experience, education, socio-economic status, +nationality, personal appearance, race, caste, color, religion, or sexual +identity and orientation. + +We pledge to act and interact in ways that contribute to an open, welcoming, +diverse, inclusive, and healthy community. + +## Our Standards + +Examples of behavior that contributes to a positive environment for our +community include: + +- Demonstrating empathy and kindness toward other people +- Being respectful of differing opinions, viewpoints, and experiences +- Giving and gracefully accepting constructive feedback +- Accepting responsibility and apologizing to those affected by our mistakes, + and learning from the experience +- Focusing on what is best not just for us as individuals, but for the overall + community + +Examples of unacceptable behavior include: + +- The use of sexualized language or imagery, and sexual attention or advances of + any kind +- Trolling, insulting or derogatory comments, and personal or political attacks +- Public or private harassment +- Publishing others' private information, such as a physical or email address, + without their explicit permission +- Other conduct which could reasonably be considered inappropriate in a + professional setting + +## Enforcement Responsibilities + +Community leaders are responsible for clarifying and enforcing our standards of +acceptable behavior and will take appropriate and fair corrective action in +response to any behavior that they deem inappropriate, threatening, offensive, +or harmful. + +Community leaders have the right and responsibility to remove, edit, or reject +comments, commits, code, wiki edits, issues, and other contributions that are +not aligned to this Code of Conduct, and will communicate reasons for moderation +decisions when appropriate. + +## Scope + +This Code of Conduct applies within all community spaces, and also applies when +an individual is officially representing the community in public spaces. +Examples of representing our community include using an official e-mail address, +posting via an official social media account, or acting as an appointed +representative at an online or offline event. + +## Enforcement + +Instances of abusive, harassing, or otherwise unacceptable behavior may be +reported to the community leaders responsible for enforcement at +[entelecheia@hotmail.com](mailto:entelecheia@hotmail.com). +All complaints will be reviewed and investigated promptly and fairly. + +All community leaders are obligated to respect the privacy and security of the +reporter of any incident. + +## Enforcement Guidelines + +Community leaders will follow these Community Impact Guidelines in determining +the consequences for any action they deem in violation of this Code of Conduct: + +### 1. Correction + +**Community Impact**: Use of inappropriate language or other behavior deemed +unprofessional or unwelcome in the community. + +**Consequence**: A private, written warning from community leaders, providing +clarity around the nature of the violation and an explanation of why the +behavior was inappropriate. A public apology may be requested. + +### 2. Warning + +**Community Impact**: A violation through a single incident or series of +actions. + +**Consequence**: A warning with consequences for continued behavior. No +interaction with the people involved, including unsolicited interaction with +those enforcing the Code of Conduct, for a specified period of time. This +includes avoiding interactions in community spaces as well as external channels +like social media. Violating these terms may lead to a temporary or permanent +ban. + +### 3. Temporary Ban + +**Community Impact**: A serious violation of community standards, including +sustained inappropriate behavior. + +**Consequence**: A temporary ban from any sort of interaction or public +communication with the community for a specified period of time. No public or +private interaction with the people involved, including unsolicited interaction +with those enforcing the Code of Conduct, is allowed during this period. +Violating these terms may lead to a permanent ban. + +### 4. Permanent Ban + +**Community Impact**: Demonstrating a pattern of violation of community +standards, including sustained inappropriate behavior, harassment of an +individual, or aggression toward or disparagement of classes of individuals. + +**Consequence**: A permanent ban from any sort of public interaction within the +community. + +## Attribution + +This Code of Conduct is adapted from the [Contributor Covenant][homepage], +version 2.1, available at +[https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1]. + +Community Impact Guidelines were inspired by +[Mozilla's code of conduct enforcement ladder][mozilla coc]. + +For answers to common questions about this code of conduct, see the FAQ at +[https://www.contributor-covenant.org/faq][faq]. Translations are available at +[https://www.contributor-covenant.org/translations][translations]. + +[homepage]: https://www.contributor-covenant.org +[v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html +[mozilla coc]: https://github.com/mozilla/diversity +[faq]: https://www.contributor-covenant.org/faq +[translations]: https://www.contributor-covenant.org/translations diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md new file mode 100644 index 0000000..b3d6961 --- /dev/null +++ b/CONTRIBUTING.md @@ -0,0 +1,55 @@ +# Contributing + +Contributions are welcome, and they are greatly appreciated! Every little bit +helps, and credit will always be given. You can contribute in the ways listed below. + +## Report Bugs + +Report bugs using GitHub issues. + +If you are reporting a bug, please include: + +* Your operating system name and version. +* Any details about your local setup that might be helpful in troubleshooting. +* Detailed steps to reproduce the bug. + +## Fix Bugs + +Look through the GitHub issues for bugs. Anything tagged with "bug" and "help +wanted" is open to whoever wants to implement it. + +## Implement Features + +Look through the GitHub issues for features. Anything tagged with "enhancement" +and "help wanted" is open to whoever wants to implement it. + +## Write Documentation + +HyFI-LPG could always use more documentation, whether as part of the +official HyFI-LPG docs, in docstrings, or even on the web in blog posts, +articles, and such. + +## Submit Feedback + +The best way to send feedback is to file an issue on GitHub. + +If you are proposing a feature: + +* Explain in detail how it would work. +* Keep the scope as narrow as possible, to make it easier to implement. +* Remember that this is a volunteer-driven project, and that contributions + are welcome :) + +## Get Started + +Ready to contribute? Here's how to set up `HyFI-LPG` for local development. + +1. Fork the repo on GitHub. +2. Clone your fork locally. +3. Create a branch for local development and make changes locally. +4. Commit your changes and push your branch to GitHub. +5. Submit a pull request through the GitHub website. + +## Code of Conduct + +Please note that the HyFI-LPG project is released with a [Contributor Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this project you agree to abide by its terms. diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..7b5f556 --- /dev/null +++ b/LICENSE @@ -0,0 +1,21 @@ +MIT License + +Copyright (c) 2024 Young Joon Lee + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..d7ba53a --- /dev/null +++ b/Makefile @@ -0,0 +1,122 @@ +# To do stuff with make, you type `make` in a directory that has a file called +# "Makefile". You can also type `make -f ` to use a different filename. +# +# A Makefile is a collection of rules. Each rule is a recipe to do a specific +# thing, sort of like a grunt task or an npm package.json script. +# +# A rule looks like this: +# +# : +# +# +# The "target" is required. The prerequisites are optional, and the commands +# are also optional, but you have to have one or the other. +# +# Type `make` to show the available targets and a description of each. +# +.DEFAULT_GOAL := help +.PHONY: help +help: ## Display this help + @awk 'BEGIN {FS = ":.*##"; printf "\nUsage:\n make \033[36m\033[0m\n"} /^[a-zA-Z_-]+:.*?##/ { printf " \033[36m%-25s\033[0m %s\n", $$1, $$2 } /^##@/ { printf "\n\033[1m%s\033[0m\n", substr($$0, 5) } ' $(MAKEFILE_LIST) + + +##@ Clean-up + +clean: ## run all clean commands + @poe clean + +##@ Git Branches + +show-branches: ## show all branches + @git show-branch --list + +dev-checkout: ## checkout the dev branch + @branch=$(shell echo $${branch:-"dev"}) && \ + git show-branch --list | grep -q $${branch} && \ + git checkout $${branch} + +dev-checkout-upstream: ## create and checkout the dev branch, and set the upstream + @branch=$(shell echo $${branch:-"dev"}) && \ + git checkout -B $${branch} && \ + git push --set-upstream origin $${branch} || true + +main-checkout: ## checkout the main branch + @git checkout main + +##@ Utilities + +large-files: ## show the 20 largest files in the repo + @find . -printf '%s %p\n'| sort -nr | head -20 + +disk-usage: ## show the disk usage of the repo + @du -h -d 2 . + +git-sizer: ## run git-sizer + @git-sizer --verbose + +gc-prune: ## garbage collect and prune + @git gc --prune=now + +##@ Setup + +install-node: ## install node + @export NVM_DIR="$${HOME}/.nvm"; \ + [ -s "$${NVM_DIR}/nvm.sh" ] && . "$${NVM_DIR}/nvm.sh"; \ + nvm install --lts + +nvm-ls: ## list node versions + @export NVM_DIR="$${HOME}/.nvm"; \ + [ -s "$${NVM_DIR}/nvm.sh" ] && . "$${NVM_DIR}/nvm.sh"; \ + nvm ls + +set-default-node: ## set default node + @export NVM_DIR="$${HOME}/.nvm"; \ + [ -s "$${NVM_DIR}/nvm.sh" ] && . "$${NVM_DIR}/nvm.sh"; \ + nvm alias default node + +install-pipx: ## install pipx (pre-requisite for external tools) + @command -v pipx &> /dev/null || pip install --user pipx || true + +install-copier: install-pipx ## install copier (pre-requisite for init-project) + @command -v copier &> /dev/null || pipx install copier || true + +install-poetry: install-pipx ## install poetry (pre-requisite for install) + @command -v poetry &> /dev/null || pipx install poetry || true + +install-poe: install-pipx ## install poetry (pre-requisite for install) + @command -v poe &> /dev/null || pipx install poethepoet || true + +install-commitzen: install-pipx ## install commitzen (pre-requisite for commit) + @command -v cz &> /dev/null || pipx install commitizen || true + +install-precommit: install-pipx ## install pre-commit + @command -v pre-commit &> /dev/null || pipx install pre-commit || true + +install-precommit-hooks: install-precommit ## install pre-commit hooks + @pre-commit install + +mkvirtualenv: ## create the project environment + @python3 -m venv "$$WORKON_HOME/hyfi-lpg" + @. "$$WORKON_HOME/hyfi-lpg/bin/activate" + @pip install --upgrade pip setuptools wheel + +mkvirtualenv-system: ## create the project environment with system site packages + @python3 -m venv "$$WORKON_HOME/hyfi-lpg" --system-site-packages + @. "$$WORKON_HOME/hyfi-lpg/bin/activate" + @pip install --upgrade pip setuptools wheel + +workon: ## activate the project environment + @. "$$WORKON_HOME/hyfi-lpg/bin/activate" + +initialize: install-pipx ## initialize the project environment + @pipx install copier + @pipx install poethepoet + @pipx install commitizen + @pipx install pre-commit + @pre-commit install + +init-project: initialize remove-template ## initialize the project (Warning: do this only once!) + @copier copy --trust --data 'code_template_source=gh:entelecheia/hyfi-template' --answers-file .copier-config.yaml gh:entelecheia/hyperfast-python-template . + +reinit-project: install-copier ## reinitialize the project (Warning: this may overwrite existing files!) + @bash -c 'args=(); while IFS= read -r file; do args+=("--skip" "$$file"); done < .copierignore; copier copy --trust "$${args[@]}" --data 'code_template_source=gh:entelecheia/hyfi-template' --answers-file .copier-config.yaml gh:entelecheia/hyperfast-python-template .' diff --git a/README.md b/README.md index 0281dd4..0351931 100644 --- a/README.md +++ b/README.md @@ -1 +1,48 @@ -# hyfi-lpg \ No newline at end of file +# HyFI-LPG + +[![pypi-image]][pypi-url] +[![version-image]][release-url] +[![release-date-image]][release-url] +[![license-image]][license-url] +[![codecov][codecov-image]][codecov-url] +[![jupyter-book-image]][docs-url] + + +[codecov-image]: https://codecov.io/gh/entelecheia/hyfi-lpg/branch/main/graph/badge.svg?token=wwvt5uOSYi +[codecov-url]: https://codecov.io/gh/entelecheia/hyfi-lpg +[pypi-image]: https://img.shields.io/pypi/v/hyfi-lpg +[license-image]: https://img.shields.io/github/license/entelecheia/hyfi-lpg +[license-url]: https://github.com/entelecheia/hyfi-lpg/blob/main/LICENSE +[version-image]: https://img.shields.io/github/v/release/entelecheia/hyfi-lpg?sort=semver +[release-date-image]: https://img.shields.io/github/release-date/entelecheia/hyfi-lpg +[release-url]: https://github.com/entelecheia/hyfi-lpg/releases +[jupyter-book-image]: https://jupyterbook.org/en/stable/_images/badge.svg + +[repo-url]: https://github.com/entelecheia/hyfi-lpg +[pypi-url]: https://pypi.org/project/hyfi-lpg +[docs-url]: https://hyfi-lpg.entelecheia.ai +[changelog]: https://github.com/entelecheia/hyfi-lpg/blob/main/CHANGELOG.md +[contributing guidelines]: https://github.com/entelecheia/hyfi-lpg/blob/main/CONTRIBUTING.md + + +HyFI-LPG is a powerful HyFI plugin for seamless integration and utilization of large language models in text processing and analysis tasks, enabling efficient workflows for researchers and practitioners. + +- Documentation: [https://hyfi-lpg.entelecheia.ai][docs-url] +- GitHub: [https://github.com/entelecheia/hyfi-lpg][repo-url] +- PyPI: [https://pypi.org/project/hyfi-lpg][pypi-url] + +HyFI-LPG is a powerful plugin for the HyFI framework, designed to streamline the integration and utilization of large language models (LLMs) in text processing and analysis tasks. This plugin aims to provide researchers and practitioners with a seamless and efficient workflow, enabling them to harness the full potential of LLMs for various applications. + +With HyFI-LPG, users can easily incorporate state-of-the-art language models into their projects, leveraging their advanced capabilities for natural language understanding, generation, and manipulation. The plugin offers a user-friendly interface and a comprehensive set of tools and utilities, making it accessible to both novice and experienced users. + +## Changelog + +See the [CHANGELOG] for more information. + +## Contributing + +Contributions are welcome! Please see the [contributing guidelines] for more information. + +## License + +This project is released under the [MIT License][license-url]. diff --git a/book/_config.yml b/book/_config.yml new file mode 100644 index 0000000..b04ec6e --- /dev/null +++ b/book/_config.yml @@ -0,0 +1,103 @@ +####################################################################################### +# A default configuration that will be loaded for all jupyter books +# See the documentation for help and more options: +# https://jupyterbook.org/customize/config.html + +####################################################################################### +# Book settings +title: "HyFI-LPG" # The title of the book. Will be placed in the left navbar. +author: "Young Joon Lee" # The author of the book +copyright: "2024" # Copyright year to be placed in the footer +# logo: Path to the book logo + +# Force re-execution of notebooks on each build. +# See https://jupyterbook.org/content/execute.html +execute: + execute_notebooks: cache + exclude_patterns: + - "*.ipynb" + allow_errors: true + +# Define the name of the latex output file for PDF builds +latex: + latex_documents: + targetname: book.tex + +# Add a bibtex file so that we can create citations +bibtex_bibfiles: + - references.bib + +# Information about where the book exists on the web +repository: + url: https://github.com/entelecheia/hyfi-lpg # Online location of your book + path_to_book: book # Optional path to your book, relative to the repository root + branch: main # Which branch of the repository should be used when creating links (optional) + +# Add GitHub buttons to your book +# See https://jupyterbook.org/customize/config.html#add-a-link-to-your-repository +html: + use_issues_button: true + use_repository_button: true + use_edit_page_button: true + favicon: https://assets.entelecheia.ai/favicon.png # favicon: Path to the favicon image + google_analytics_id: G-VMN7QWCMSV # google_analytics_id: Google Analytics ID + +sphinx: + config: + html_extra_path: ["assets"] + bibtex_reference_style: author_year + mathjax_path: https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js + intersphinx_mapping: + ebp: + - "https://executablebooks.org/en/latest/" + - null + myst-parser: + - "https://myst-parser.readthedocs.io/en/latest/" + - null + myst-nb: + - "https://myst-nb.readthedocs.io/en/latest/" + - null + sphinx: + - "https://www.sphinx-doc.org/en/master" + - null + nbformat: + - "https://nbformat.readthedocs.io/en/latest" + - null + sd: + - "https://sphinx-design.readthedocs.io/en/latest" + - null + sphinxproof: + - "https://sphinx-proof.readthedocs.io/en/latest/" + - null + hoverxref_intersphinx: + - "sphinxproof" + mathjax3_config: + tex: + macros: + "N": "\\mathbb{N}" + "floor": ["\\lfloor#1\\rfloor", 1] + "bmat": ["\\left[\\begin{array}"] + "emat": ["\\end{array}\\right]"] + add_module_names: false + autosummary_generate: true + + extra_extensions: + - sphinx.ext.intersphinx + - sphinx.ext.autodoc + - sphinx.ext.autosummary + - sphinx.ext.napoleon + - sphinx.ext.viewcode + - sphinx_inline_tabs + - sphinx_proof + - sphinx_examples + - hoverxref.extension + - sphinxcontrib.youtube + - sphinxcontrib.video + - sphinxcontrib.mermaid + - sphinx_thebe + - sphinx_carousel.carousel + - sphinxcontrib.lastupdate + +launch_buttons: + colab_url: "https://colab.research.google.com" + thebe: true diff --git a/book/_toc.yml b/book/_toc.yml new file mode 100644 index 0000000..6f222bb --- /dev/null +++ b/book/_toc.yml @@ -0,0 +1,9 @@ +# Table of contents +# Learn more at https://jupyterbook.org/customize/toc.html + +format: jb-book +root: index +chapters: + - file: usage + - file: api + - file: examples diff --git a/book/api.rst b/book/api.rst new file mode 100644 index 0000000..d24c668 --- /dev/null +++ b/book/api.rst @@ -0,0 +1,16 @@ +API Reference +============= + +.. autosummary:: + :toctree: _autosummary + :recursive: + + hylpg + +main +---- +.. autofunction:: hylpg.__cli__.main + +get_version +----------- +.. autofunction:: hylpg.__init__.get_version diff --git a/book/assets/assets/extra/.gitkeep b/book/assets/assets/extra/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/book/assets/extra/.gitkeep b/book/assets/extra/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/book/examples.md b/book/examples.md new file mode 100644 index 0000000..c497519 --- /dev/null +++ b/book/examples.md @@ -0,0 +1,34 @@ +--- +jupytext: + cell_metadata_filter: -all + formats: md:myst + text_representation: + extension: .md + format_name: myst + format_version: 0.13 + jupytext_version: 1.11.5 +kernelspec: + display_name: Python 3 + language: python + name: python3 +--- + +# Examples + +This page contains a few examples of how you can use HyFI-LPG package. + +## Installation + +You can install HyFI-LPG using `pip`: + +```{code-cell} +pip install hyfi-lpg +``` + +## Usage + +```python +from hylpg import get_version + +print(get_version()) +``` diff --git a/book/index.md b/book/index.md new file mode 100644 index 0000000..cce0280 --- /dev/null +++ b/book/index.md @@ -0,0 +1,55 @@ +# Home + +[![pypi-image]][pypi-url] +[![version-image]][release-url] +[![release-date-image]][release-url] +[![license-image]][license-url] +[![jupyter-book-image]][docs-url] +[![codecov][codecov-image]][codecov-url] + + +[hyperfast python template]: https://github.com/entelecheia/hyperfast-python-template + +[codecov-image]: https://codecov.io/gh/entelecheia/hyfi-lpg/branch/main/graph/badge.svg?token=wwvt5uOSYi +[codecov-url]: https://codecov.io/gh/entelecheia/hyfi-lpg +[pypi-image]: https://img.shields.io/pypi/v/hyfi-lpg +[license-image]: https://img.shields.io/github/license/entelecheia/hyfi-lpg +[license-url]: https://github.com/entelecheia/hyfi-lpg/blob/main/LICENSE +[version-image]: https://img.shields.io/github/v/release/entelecheia/hyfi-lpg?sort=semver +[release-date-image]: https://img.shields.io/github/release-date/entelecheia/hyfi-lpg +[release-url]: https://github.com/entelecheia/hyfi-lpg/releases +[jupyter-book-image]: https://jupyterbook.org/en/stable/_images/badge.svg + +[repo-url]: https://github.com/entelecheia/hyfi-lpg +[pypi-url]: https://pypi.org/project/hyfi-lpg +[docs-url]: https://hyfi-lpg.entelecheia.ai +[changelog]: https://github.com/entelecheia/hyfi-lpg/blob/main/CHANGELOG.md +[contributing guidelines]: https://github.com/entelecheia/hyfi-lpg/blob/main/CONTRIBUTING.md + + +HyFI-LPG is a powerful HyFI plugin for seamless integration and utilization of large language models in text processing and analysis tasks, enabling efficient workflows for researchers and practitioners. + +- Documentation: [https://hyfi-lpg.entelecheia.ai][docs-url] +- GitHub: [https://github.com/entelecheia/hyfi-lpg][repo-url] +- PyPI: [https://pypi.org/project/hyfi-lpg][pypi-url] + +HyFI-LPG is a powerful plugin for the HyFI framework, designed to streamline the integration and utilization of large language models (LLMs) in text processing and analysis tasks. This plugin aims to provide researchers and practitioners with a seamless and efficient workflow, enabling them to harness the full potential of LLMs for various applications. + +With HyFI-LPG, users can easily incorporate state-of-the-art language models into their projects, leveraging their advanced capabilities for natural language understanding, generation, and manipulation. The plugin offers a user-friendly interface and a comprehensive set of tools and utilities, making it accessible to both novice and experienced users. + +## Changelog + +See the [CHANGELOG] for more information. + +## Contributing + +Contributions are welcome! Please see the [contributing guidelines] for more information. + +## License + +This project is released under the [MIT License][license-url]. + +## Table of Contents + +```{tableofcontents} +``` diff --git a/book/references.bib b/book/references.bib new file mode 100644 index 0000000..ec380ec --- /dev/null +++ b/book/references.bib @@ -0,0 +1,3 @@ +--- +--- + diff --git a/book/requirements.txt b/book/requirements.txt new file mode 100644 index 0000000..6edb3ea --- /dev/null +++ b/book/requirements.txt @@ -0,0 +1,12 @@ +jupyter-book==1.0.0 +docutils +sphinx-inline-tabs +sphinx-examples +sphinx-proof +sphinx-hoverxref +sphinxcontrib-youtube +sphinxcontrib-video +sphinx-thebe +sphinxcontrib-mermaid +sphinx-carousel +sphinxcontrib-lastupdate diff --git a/book/usage.md b/book/usage.md new file mode 100644 index 0000000..8f04b05 --- /dev/null +++ b/book/usage.md @@ -0,0 +1 @@ +# Usage diff --git a/codecov.yml b/codecov.yml new file mode 100644 index 0000000..8ce5dbd --- /dev/null +++ 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(>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] + +[metadata] +lock-version = "2.0" +python-versions = ">=3.9,<3.13" +content-hash = "54caef2357df4519020adddaa4c7d192dd6d2e317abab77ba2c09542ec4dd867" diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..5a35758 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,119 @@ +[tool.poetry] +name = "hyfi-lpg" +version = "0.0.0" +description = "HyFI-LPG is an LLM powered gleaning tool for HyFI." +authors = ["Young Joon Lee "] +license = "MIT" +homepage = "https://hyfi-lpg.entelecheia.ai" +repository = "https://github.com/entelecheia/hyfi-lpg" +readme = "README.md" +packages = [{ include = "hylpg", from = "src" }] + +[tool.poetry.scripts] +hylpg = 'hylpg.__cli__:main' + +[tool.poetry.dependencies] +python = ">=3.9,<3.13" +click = "^8.1.3" +hyfi = "^1.36.4" + +[tool.poetry.group.dev] +optional = true + +[tool.poetry.group.dev.dependencies] +python-semantic-release = "^7.33.1" +isort = "^5.12.0" +black = ">=23.0.0" +flake8 = "^6.0.0" +mypy = "^1.0.0" +flake8-pyproject = "^1.2.2" +pytest = "^7.2.1" +pytest-cov = "^4.0.0" + +[tool.poe] +include = [".tasks.toml", ".tasks-extra.toml"] + +[tool.black] +# 'extend-exclude' excludes files or directories in addition to the defaults +extend-exclude = ''' +# A regex preceded with ^/ will apply only to files and directories +# in the root of the project. +( + _version.py + | .refs + | .copier-template + | tests + | docs + | book + | _build + | node_modules +) +''' + +[tool.isort] +profile = "black" +skip = ['_version.py', 'node_modules', '_build', 'docs', 'tests', 'venv', '.copier-template', '.refs'] + +[tool.flake8] +ignore = ['F401', 'E501', 'W503'] +exclude = ["node_modules", "_build", "docs", "tests", "venv", ".copier-template", ".refs"] +per-file-ignores = ['__init__.py:F401', '_version.py:W292'] + +[tool.mypy] +namespace_packages = true +exclude = ["node_modules", "build", "_build", "dist", "docs", "tests", "venv", ".copier-template", ".refs"] +# 3rd party import +ignore_missing_imports = true +# dynamic typing +disallow_any_unimported = true +disallow_any_expr = false +disallow_any_decorated = false +disallow_any_explicit = true +disallow_any_generics = false +disallow_subclassing_any = true +# platform +python_version = "3.8" +# untyped +disallow_untyped_calls = true +disallow_untyped_defs = true +disallow_incomplete_defs = true +disallow_untyped_decorators = true +# None and Optional +no_implicit_optional = true +# Warnings +warn_return_any = false +warn_unreachable = true +# Misc +pretty = true + +[tool.pytest.ini_options] +testpaths = ["tests"] +addopts = "-p no:cacheprovider" # deactivating pytest caching. + +[tool.coverage.report] +exclude_lines = ['if __name__ == "__main__":'] + +[tool.commitizen] +name = "cz_conventional_commits" +tag_format = "v$version" + +[tool.semantic_release] +branch = "main" +version_toml = "pyproject.toml:tool.poetry.version" +version_variable = "src/hylpg/_version.py:__version__" +version_source = "tag" +commit_version_number = true # required for version_source = "tag" +commit_subject = "chore(release): :rocket: {version} [skip ci]" +prerelease_tag = "rc" +major_on_zero = true +tag_commit = true +changelog_file = "CHANGELOG.md" +upload_to_repository = true +upload_to_release = true +hvcs = "github" # hosting version control system, gitlab is also supported +build_command = "poetry build --no-cache" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" + diff --git a/src/hylpg/__cli__.py b/src/hylpg/__cli__.py new file mode 100644 index 0000000..6a6a31b --- /dev/null +++ b/src/hylpg/__cli__.py @@ -0,0 +1,12 @@ +"""Command line interface for hylpg""" + +from hyfi import hyfi_main + + +def main() -> None: + """Main function for the CLI""" + hyfi_main() + + +if __name__ == "__main__": + main() diff --git a/src/hylpg/__init__.py b/src/hylpg/__init__.py new file mode 100644 index 0000000..6de9d18 --- /dev/null +++ b/src/hylpg/__init__.py @@ -0,0 +1,28 @@ +"""Implements the package initialization logic""" + +import os + +from hyfi import HyFI + +from ._version import __version__ + +# Read the package path from the current directory +__package_path__ = os.path.dirname(__file__) + +# Initialize the global HyFI object +HyFI.initialize_global_hyfi( + package_path=__package_path__, + version=__version__, + plugins=[], +) + +# Initialize the logger +HyFI.setLogger() + + +def get_version() -> str: + """Get the package version.""" + return __version__ + + +__all__ = ["HyFI", "get_version"] diff --git a/src/hylpg/_version.py b/src/hylpg/_version.py new file mode 100644 index 0000000..6c8e6b9 --- /dev/null +++ b/src/hylpg/_version.py @@ -0,0 +1 @@ +__version__ = "0.0.0" diff --git a/src/hylpg/conf/__init__.py b/src/hylpg/conf/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/src/hylpg/conf/about/hylpg.yaml b/src/hylpg/conf/about/hylpg.yaml new file mode 100644 index 0000000..edc205e --- /dev/null +++ b/src/hylpg/conf/about/hylpg.yaml @@ -0,0 +1,6 @@ +_open_link_: False +name: "HyFI-LPG" +authors: "Young Joon Lee " +description: "HyFI-LPG is a powerful HyFI plugin for seamless integration and utilization of large language models in text processing and analysis tasks, enabling efficient workflows for researchers and practitioners." +homepage: "https://hyfi-lpg.entelecheia.ai" +license: "MIT" diff --git a/src/hylpg/py.typed b/src/hylpg/py.typed new file mode 100644 index 0000000..e69de29 diff --git a/tests/hylpg/test_cli.py b/tests/hylpg/test_cli.py new file mode 100644 index 0000000..8c64c3d --- /dev/null +++ b/tests/hylpg/test_cli.py @@ -0,0 +1,22 @@ +""" +test cli module +""" +import subprocess +from typing import List, Tuple + + +def capture(command: List[str]) -> Tuple[bytes, bytes, int]: + proc = subprocess.Popen( + command, + stdout=subprocess.PIPE, + stderr=subprocess.PIPE, + ) + out, err = proc.communicate() + return out, err, proc.returncode + + +def test_cli() -> None: + """Test cli module""" + command = ["hylpg"] + out, err, exitcode = capture(command) + assert exitcode == 0 diff --git a/tests/hylpg/test_init.py b/tests/hylpg/test_init.py new file mode 100644 index 0000000..2e79f20 --- /dev/null +++ b/tests/hylpg/test_init.py @@ -0,0 +1,12 @@ +from hylpg import get_version + + +def test_get_version() -> None: + """ + Test the get_version function. + + version format: major.minor.patch[.devN+g] + """ + version = get_version() + # check version format + assert version.count(".") in range(2, 5) diff --git a/tests/notebook/tests.ipynb b/tests/notebook/tests.ipynb new file mode 100644 index 0000000..27c898e --- /dev/null +++ b/tests/notebook/tests.ipynb @@ -0,0 +1,198 @@ +{ + "cells": [ + { + "attachments": {}, + "cell_type": "markdown", + "metadata": { + "id": "cjgz1WTcPWee" + }, + "source": [ + "# HyFI Test Notebook\n", + "\n", + "This Jupyter Notebook is used to test the HyFI package. It contains examples of how to use the package and how to create a new HyFI model.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "from hylpg import HyFI" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Check Version\n", + "\n", + "Now, let's get the version of the `hyfi` package.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "id": "BzxPwsOVPWef" + }, + "outputs": [], + "source": [ + "version = HyFI.__version__\n", + "print(\"HyFI version:\", version)\n", + "version = HyFI().app_version\n", + "print(\"HyFI app version:\", version)\n", + "app_name = HyFI().app_name\n", + "print(\"HyFI app name:\", app_name)\n", + "HyFI.print_about()\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Test expanding $PWD and $USER variables\n", + "posix_expr = \"The system workspace root is $WORKSPACE_ROOT and the user is $USER.\"\n", + "\n", + "expanded_expr = HyFI.expand_posix_vars(posix_expr)\n", + "print(expanded_expr)" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Initialize Project\n", + "\n", + "We'll initialize the project using the `HyFI.initialize` function. The function takes the following parameters:\n", + "\n", + "- `project_name`: Name of the project to use.\n", + "- `project_description`: Description of the project that will be used.\n", + "- `project_root`: Root directory of the project.\n", + "- `project_workspace_name`: Name of the project's workspace directory.\n", + "- `global_hyfi_root`: Root directory of the global hyfi.\n", + "- `global_workspace_name`: Name of the global hierachical workspace directory.\n", + "- `num_workers`: Number of workers to run.\n", + "- `logging_level`: Log level for the log.\n", + "- `autotime`: Whether to automatically set time and / or keep track of run times.\n", + "- `retina`: Whether to use retina or not.\n", + "- `verbose`: Enables or disables logging\n", + "\n", + "We'll check if we're running in Google Colab, and if so, we'll mount Google Drive.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "if HyFI.is_colab():\n", + " HyFI.mount_google_drive()\n", + "\n", + "h = HyFI.initialize(\n", + " project_name=\"hyfi\",\n", + " logging_level=\"INFO\",\n", + " verbose=True,\n", + ")\n", + "\n", + "print(\"project_dir:\", h.project.root_dir)\n", + "print(\"project_workspace_dir:\", h.project.workspace_dir)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "h.project.env.dict()" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Compose Configuration\n", + "\n", + "We can use the `HyFI.compose` function to load a configuration file. In this example, we'll use the default configuration by specifying `path=__default__`.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "cfg = HyFI.compose(\"project\")" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Display Configuration\n", + "\n", + "Now, let's print the loaded configuration using the `HyFI.print` function.\n" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "HyFI.print(cfg)" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "metadata": {}, + "source": [ + "That's it! This example demonstrated the basic usage of the `hyfi_template` package. You can now use this package to manage your own projects and tasks in a structured manner.\n" + ] + } + ], + "metadata": { + "colab": { + "name": "corpus.ipynb", + "provenance": [] + }, + "interpreter": { + "hash": "f869af7787e6a1c49e09e367fc6e1b81d93d1c6583b43249c80edc047bd13cb2" + }, + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.8.10" + }, + "widgets": { + "application/vnd.jupyter.widget-state+json": { + "state": {}, + "version_major": 2, + "version_minor": 0 + } + } + }, + "nbformat": 4, + "nbformat_minor": 1 +}