Set default overab to 2

erikrikarddaniel · erikrikarddaniel · commit 9e3fc8cacf67 · 2019-10-26T09:43:22.000+02:00
diff --git a/src/R/dada2bimeras.R b/src/R/dada2bimeras.R
@@ -29,7 +29,7 @@ option_list = list(
     help='Do not allow one off bimeras. See R doc for isBimeraDenovo.'
   ),
   make_option(
-    c('--overab'), type='integer', default=1,
+    c('--overab'), type='integer', default=2,
     help='Parent overabundance multiplier, default %default. See R doc for isBimeraDenovo.'
   ),
   make_option(
diff --git a/src/R/dada2wf.R b/src/R/dada2wf.R
@@ -84,7 +84,7 @@ option_list = list(
     help='Do not allow one off bimeras. See R doc for isBimeraDenovo.'
   ),
   make_option(
-    c('--overab'), type='integer', default=1,
+    c('--overab'), type='integer', default=2,
     help='Parent overabundance multiplier, default %default. See R doc for isBimeraDenovo.'
   ),
   make_option(
