diff --git a/lib/mix_dependency_submission/application.ex b/lib/mix_dependency_submission/application.ex
index 1626da1..59a8afa 100644
--- a/lib/mix_dependency_submission/application.ex
+++ b/lib/mix_dependency_submission/application.ex
@@ -12,6 +12,10 @@ defmodule MixDependencySubmission.Application do
   def start(_start_type, _start_args) do
     Mix.Hex.start()
 
+    Mix.SCM.delete(Hex.SCM)
+    Mix.SCM.append(MixDependencySubmission.SCM.System)
+    Mix.SCM.append(Hex.SCM)
+
     if Burrito.Util.running_standalone?() do
       exit_code = Submit.run(Args.argv())
 
diff --git a/lib/mix_dependency_submission/fetcher.ex b/lib/mix_dependency_submission/fetcher.ex
index 2c8f325..f259d19 100644
--- a/lib/mix_dependency_submission/fetcher.ex
+++ b/lib/mix_dependency_submission/fetcher.ex
@@ -55,6 +55,27 @@ defmodule MixDependencySubmission.Fetcher do
 
   @manifest_fetchers [__MODULE__.MixFile, __MODULE__.MixLock, __MODULE__.MixRuntime]
 
+  @static_deps %{
+    elixir: %{
+      scm: MixDependencySubmission.SCM.System,
+      mix_dep: {:elixir, nil, []},
+      relationship: :direct,
+      scope: :runtime
+    },
+    stdlib: %{
+      scm: MixDependencySubmission.SCM.System,
+      mix_dep: {:stdlib, nil, []},
+      relationship: :direct,
+      scope: :runtime
+    },
+    kernel: %{
+      scm: MixDependencySubmission.SCM.System,
+      mix_dep: {:kernel, nil, []},
+      relationship: :direct,
+      scope: :runtime
+    }
+  }
+
   @doc """
   Fetches and merges dependencies from all registered fetchers.
 
@@ -87,13 +108,26 @@ defmodule MixDependencySubmission.Fetcher do
         Map.merge(acc || %{}, dependencies, &merge/3)
     end)
     |> case do
-      nil -> nil
-      %{} = deps -> transform_all(deps)
+      nil ->
+        nil
+
+      %{} = deps ->
+        deps = Map.merge(deps, @static_deps, &merge/3)
+
+        transform_all(deps)
     end
   end
 
   @spec merge(app_name(), left :: dependency(), right :: dependency()) :: dependency()
-  defp merge(_app, left, right), do: Map.merge(left, right)
+  defp merge(_app, left, right), do: Map.merge(left, right, &merge_property/3)
+
+  @spec merge_property(key :: atom(), left :: value, right :: value) :: value when value: term()
+  defp merge_property(key, left, right)
+  defp merge_property(_key, value, value), do: value
+  defp merge_property(:relationship, :direct, _right), do: :direct
+  defp merge_property(:relationship, _left, :direct), do: :direct
+  defp merge_property(:dependencies, left, right), do: Enum.uniq(left ++ right)
+  defp merge_property(_key, _left, right), do: right
 
   @spec transform_all(dependencies :: %{app_name() => dependency()}) :: %{
           String.t() => Dependency.t()
diff --git a/lib/mix_dependency_submission/fetcher/mix_file.ex b/lib/mix_dependency_submission/fetcher/mix_file.ex
index b353e82..753b2e7 100644
--- a/lib/mix_dependency_submission/fetcher/mix_file.ex
+++ b/lib/mix_dependency_submission/fetcher/mix_file.ex
@@ -35,7 +35,25 @@ defmodule MixDependencySubmission.Fetcher.MixFile do
   """
   @impl Fetcher
   def fetch do
-    Mix.Project.config()[:deps] |> List.wrap() |> Map.new(&normalize_dep/1)
+    app_config = get_application_config()
+
+    [
+      Mix.Project.config()[:deps] || [],
+      [{:elixir, Mix.Project.config()[:elixir], []}],
+      Enum.map(app_config[:applications] || [], &{&1, []}),
+      Enum.map(app_config[:extra_applications] || [], &{&1, []}),
+      Enum.map(app_config[:included_applications] || [], &{&1, included: true})
+    ]
+    |> Enum.concat()
+    |> Enum.uniq_by(&elem(&1, 0))
+    |> Map.new(&normalize_dep/1)
+  end
+
+  @spec get_application_config() :: Keyword.t()
+  defp get_application_config do
+    Mix.Project.get!().application()
+  rescue
+    UndefinedFunctionError -> []
   end
 
   @spec normalize_dep(
diff --git a/lib/mix_dependency_submission/fetcher/mix_runtime.ex b/lib/mix_dependency_submission/fetcher/mix_runtime.ex
index 3b75251..f2d6a4e 100644
--- a/lib/mix_dependency_submission/fetcher/mix_runtime.ex
+++ b/lib/mix_dependency_submission/fetcher/mix_runtime.ex
@@ -22,7 +22,7 @@ defmodule MixDependencySubmission.Fetcher.MixRuntime do
       iex> %{
       ...>   burrito: %{
       ...>     scm: Hex.SCM,
-      ...>     dependencies: [:jason, :req, :typed_struct],
+      ...>     dependencies: [:jason, :req, :typed_struct, :kernel, :stdlib, :elixir, :logger, :eex],
       ...>     mix_config: _config,
       ...>     relationship: :direct,
       ...>     scope: :runtime,
@@ -35,11 +35,83 @@ defmodule MixDependencySubmission.Fetcher.MixRuntime do
   """
   @impl Fetcher
   def fetch do
-    root_deps = [depth: 1] |> Mix.Project.deps_tree() |> Map.keys()
-    deps_paths = Mix.Project.deps_paths()
-    deps_scms = Mix.Project.deps_scms()
+    app = Mix.Project.config()[:app]
 
-    Map.new(Mix.Project.deps_tree(), &resolve_dep(&1, root_deps, deps_paths, deps_scms))
+    root_deps =
+      [depth: 1]
+      |> Mix.Project.deps_tree()
+      |> Map.keys()
+      |> Enum.concat(get_app_dependencies(app, true))
+      |> Enum.uniq()
+
+    deps_tree = full_runtime_tree(app)
+
+    deps_paths =
+      deps_tree
+      |> Map.keys()
+      |> Enum.reduce(Mix.Project.deps_paths(), fn dep, deps_paths ->
+        try do
+          app_dir = Application.app_dir(dep)
+          Map.put_new(deps_paths, dep, app_dir)
+        rescue
+          ArgumentError ->
+            deps_paths
+        end
+      end)
+
+    deps_scms =
+      deps_tree
+      |> Map.keys()
+      |> Enum.reduce(Mix.Project.deps_scms(), fn dep, deps_scms ->
+        Map.put_new(deps_scms, dep, MixDependencySubmission.SCM.System)
+      end)
+
+    Map.new(deps_tree, &resolve_dep(&1, root_deps, deps_paths, deps_scms))
+  end
+
+  @spec full_runtime_tree(app :: Fetcher.app_name()) :: %{
+          Fetcher.app_name() => [Fetcher.app_name()]
+        }
+  defp full_runtime_tree(app) do
+    app_dependencies = app |> get_app_dependencies(true) |> Enum.map(&{&1, []})
+
+    Mix.Project.deps_tree()
+    |> Enum.concat(app_dependencies)
+    |> Enum.group_by(&elem(&1, 0), &elem(&1, 1))
+    |> Enum.flat_map(fn {app, dependencies} ->
+      dependencies =
+        [dependencies | get_app_dependencies(app, false)] |> List.flatten() |> Enum.uniq()
+
+      [{app, dependencies} | Enum.map(dependencies, &{&1, []})]
+    end)
+    |> Enum.group_by(&elem(&1, 0), &elem(&1, 1))
+    |> Map.new(fn {app, dependencies} ->
+      {app, dependencies |> List.flatten() |> Enum.uniq()}
+    end)
+  end
+
+  @spec get_app_dependencies(app :: Fetcher.app_name(), root? :: boolean()) :: [
+          Fetcher.app_name()
+        ]
+  defp get_app_dependencies(app, root?)
+  defp get_app_dependencies(nil, _root?), do: []
+
+  defp get_app_dependencies(app, root?) do
+    case Application.spec(app) do
+      nil ->
+        []
+
+      spec ->
+        included = spec[:included_applications] || []
+        applications = spec[:applications] || []
+        optional = spec[:optional_applications] || []
+
+        if root? do
+          Enum.uniq(included ++ applications ++ optional)
+        else
+          Enum.uniq(included ++ (applications -- optional))
+        end
+    end
   end
 
   @spec resolve_dep(
diff --git a/lib/mix_dependency_submission/scm/system.ex b/lib/mix_dependency_submission/scm/system.ex
new file mode 100644
index 0000000..c2aa37e
--- /dev/null
+++ b/lib/mix_dependency_submission/scm/system.ex
@@ -0,0 +1,106 @@
+defmodule MixDependencySubmission.SCM.System do
+  @moduledoc """
+  A `Mix.SCM` implementation that looks up the system dependencies.
+  (Erlang, Elixir, Hex, etc.)
+  """
+
+  @behaviour Mix.SCM
+
+  @elixir_applications ~w[eex elixir ex_unit iex logger mix]a
+  defguard is_elixir_app(app) when app in @elixir_applications
+
+  {:ok, dirs} = :file.list_dir_all(:code.lib_dir())
+
+  @erlang_applications Enum.map(dirs, fn dir ->
+                         [name, _version] = dir |> List.to_string() |> String.split("-", parts: 2)
+                         String.to_atom(name)
+                       end)
+
+  defguard is_erlang_app(app) when app in @erlang_applications
+
+  defguard is_hex_app(app) when app == :hex
+  defguard is_system_app(app) when is_elixir_app(app) or is_erlang_app(app) or is_hex_app(app)
+
+  @impl Mix.SCM
+  def accepts_options(app, opts)
+
+  def accepts_options(app, opts) when is_system_app(app),
+    do: Keyword.merge(opts, app: app, build: Application.app_dir(app), dest: Application.app_dir(app))
+
+  def accepts_options(_app, _opts), do: nil
+
+  @impl Mix.SCM
+  def fetchable?, do: false
+
+  @impl Mix.SCM
+  def format(opts), do: opts[:app]
+
+  @impl Mix.SCM
+  def format_lock(_opts), do: nil
+
+  @impl Mix.SCM
+  def checked_out?(_opts), do: true
+
+  @impl Mix.SCM
+  def lock_status(_opts), do: :ok
+
+  @impl Mix.SCM
+  def equal?(opts1, opts2), do: opts1[:app] == opts2[:app]
+
+  @impl Mix.SCM
+  def managers(_opts), do: []
+
+  @impl Mix.SCM
+  @dialyzer {:no_return, checkout: 1}
+  def checkout(_opts), do: Mix.raise("System SCM does not support checkout.")
+
+  @impl Mix.SCM
+  @dialyzer {:no_return, update: 1}
+  def update(_opts), do: Mix.raise("System SCM does not support update.")
+end
+
+defmodule MixDependencySubmission.SCM.MixDependencySubmission.SCM.System do
+  @moduledoc """
+  `MixDependencySubmission.SCM` implementation for system dependencies.
+  """
+
+  @behaviour MixDependencySubmission.SCM
+
+  import MixDependencySubmission.SCM.System,
+    only: [is_elixir_app: 1, is_erlang_app: 1, is_hex_app: 1]
+
+  @impl MixDependencySubmission.SCM
+  def mix_dep_to_purl(app, version)
+
+  def mix_dep_to_purl({app, _version_requirement, _opts}, _version) when is_elixir_app(app) do
+    Purl.new!(%Purl{
+      type: "generic",
+      # TODO: Use once the spec is merged
+      # type: "otp",
+      name: to_string(app),
+      subpath: ["lib", to_string(app)],
+      qualifiers: %{"vcs_url" => "git+https://github.com/elixir-lang/elixir.git"}
+    })
+  end
+
+  def mix_dep_to_purl({app, _version_requirement, _opts}, _version) when is_erlang_app(app) do
+    Purl.new!(%Purl{
+      type: "generic",
+      # TODO: Use once the spec is merged
+      # type: "otp",
+      name: to_string(app),
+      subpath: ["lib", to_string(app)],
+      qualifiers: %{"vcs_url" => "git+https://github.com/erlang/otp.git"}
+    })
+  end
+
+  def mix_dep_to_purl({app, _version_requirement, _opts}, _version) when is_hex_app(app) do
+    Purl.new!(%Purl{
+      type: "generic",
+      # TODO: Use once the spec is merged
+      # type: "otp",
+      name: to_string(app),
+      qualifiers: %{"vcs_url" => "git+https://github.com/hexpm/hex.git"}
+    })
+  end
+end
diff --git a/test/fixtures/app_locked/mix.exs b/test/fixtures/app_locked/mix.exs
index a288123..571f2ea 100644
--- a/test/fixtures/app_locked/mix.exs
+++ b/test/fixtures/app_locked/mix.exs
@@ -5,6 +5,7 @@ defmodule AppNameToReplace.MixProject do
     [
       app: :app_name_to_replace,
       version: "0.0.0-dev",
+      elixir: "1.18.4",
       deps: [
         {:credo, "~> 1.7"},
         {:mime, "~> 2.0"},
@@ -14,4 +15,10 @@ defmodule AppNameToReplace.MixProject do
       ]
     ]
   end
+
+  def application do
+    [
+      extra_applications: [:logger, :public_key]
+    ]
+  end
 end
diff --git a/test/mix_dependency_submission/fetcher/mix_file_test.exs b/test/mix_dependency_submission/fetcher/mix_file_test.exs
index 55d3c7d..81eaff6 100644
--- a/test/mix_dependency_submission/fetcher/mix_file_test.exs
+++ b/test/mix_dependency_submission/fetcher/mix_file_test.exs
@@ -55,6 +55,24 @@ defmodule MixDependencySubmission.Fetcher.MixFileTest do
                         depth: 1
                       ]},
                    relationship: :direct
+                 },
+                 elixir: %{
+                   scope: :runtime,
+                   scm: MixDependencySubmission.SCM.System,
+                   mix_dep: {:elixir, "1.18.4", [app: :elixir, build: _elixir_build, dest: _elixir_dest]},
+                   relationship: :direct
+                 },
+                 logger: %{
+                   scope: :runtime,
+                   scm: MixDependencySubmission.SCM.System,
+                   mix_dep: {:logger, nil, [app: :logger, build: _logger_build, dest: _logger_dest]},
+                   relationship: :direct
+                 },
+                 public_key: %{
+                   scope: :runtime,
+                   scm: MixDependencySubmission.SCM.System,
+                   mix_dep: {:public_key, nil, [app: :public_key, build: _public_key_build, dest: _public_key_dest]},
+                   relationship: :direct
                  }
                } = MixFile.fetch()
       end)
diff --git a/test/mix_dependency_submission/fetcher/mix_runtime_test.exs b/test/mix_dependency_submission/fetcher/mix_runtime_test.exs
index bcf7ac6..cbcf96d 100644
--- a/test/mix_dependency_submission/fetcher/mix_runtime_test.exs
+++ b/test/mix_dependency_submission/fetcher/mix_runtime_test.exs
@@ -58,8 +58,16 @@ defmodule MixDependencySubmission.Fetcher.MixRuntimeTest do
                    version: nil,
                    mix_config: [],
                    scm: Hex.SCM,
-                   dependencies: [],
+                   dependencies: [:kernel, :stdlib, :elixir, :logger],
                    relationship: :direct
+                 },
+                 logger: %{
+                   scope: :runtime,
+                   version: nil,
+                   mix_config: [{:app, :logger} | _logger_rest],
+                   scm: MixDependencySubmission.SCM.System,
+                   dependencies: [],
+                   relationship: :indirect
                  }
                } = MixRuntime.fetch()
       end)
diff --git a/test/mix_dependency_submission_test.exs b/test/mix_dependency_submission_test.exs
index e414c58..7271183 100644
--- a/test/mix_dependency_submission_test.exs
+++ b/test/mix_dependency_submission_test.exs
@@ -199,6 +199,34 @@ defmodule MixDependencySubmissionTest do
                    %Purl{type: "hex", name: "file_system", version: "0.2.10"},
                    %Purl{type: "hex", name: "jason", version: "1.4.0"}
                  ]
+               },
+               "elixir" => %Dependency{
+                 scope: :runtime,
+                 metadata: %{},
+                 dependencies: [],
+                 relationship: :direct,
+                 package_url: %Purl{
+                   type: "generic",
+                   # TODO: Use once the spec is merged
+                   # type: "otp",
+                   name: "elixir",
+                   qualifiers: %{"vcs_url" => "git+https://github.com/elixir-lang/elixir.git"},
+                   subpath: ["lib", "elixir"]
+                 }
+               },
+               "stdlib" => %Dependency{
+                 scope: :runtime,
+                 metadata: %{},
+                 dependencies: [],
+                 relationship: :direct,
+                 package_url: %Purl{
+                   type: "generic",
+                   # TODO: Use once the spec is merged
+                   # type: "otp",
+                   name: "stdlib",
+                   qualifiers: %{"vcs_url" => "git+https://github.com/erlang/otp.git"},
+                   subpath: ["lib", "stdlib"]
+                 }
                }
              } = resolved
     end