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test-model.yml
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name: Model Test on push
on:
push:
branches: ['main']
workflow_dispatch:
jobs:
test:
if: github.repository != 'ersilia-os/eos-template'
runs-on: ubuntu-latest
steps:
- name: Checkout persist credentials
uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # [email protected]
with:
persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token
fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
lfs: 'true'
- name: Add conda to system path
run: echo $CONDA/bin >> $GITHUB_PATH
- name: Source conda
run: source $CONDA/etc/profile.d/conda.sh
- name: Set Python to 3.10.10
run:
conda install -y python=3.10.10
- name: Install dependencies
run: |
source activate
conda init
conda install git-lfs -c conda-forge
git-lfs install
conda install gh -c conda-forge
- name: Install ersilia
run: |
source activate
python --version
echo "After conda init"
conda init
python -m pip install git+https://github.com/ersilia-os/ersilia.git
- name: Update metadata to AirTable
id: update-metadata-to-airtable
env:
USER_NAME: ${{ github.repository_owner }}
BRANCH: "main"
REPO_NAME: ${{ github.event.repository.name }}
AIRTABLE_API_KEY: ${{ secrets.AIRTABLE_API_KEY }}
run: |
source activate
echo "Updating metadata to AirTable looking at owner: $USER_NAME"
wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/update_metadata_to_airtable.py
python3 update_metadata_to_airtable.py $USER_NAME $REPO_NAME $BRANCH $AIRTABLE_API_KEY
rm update_metadata_to_airtable.py
- name: Update README file
id: update-readme-file
env:
MODEL_ID: ${{ github.event.repository.name }}
run: |
source activate
echo "Updating README file with AirTable metadata for model: $MODEL_ID"
wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/update_readme_from_airtable.py
python3 update_readme_from_airtable.py $MODEL_ID .
rm update_readme_from_airtable.py
less README.md
- name: Commit and push changes done to the README file
uses: actions-js/push@156f2b10c3aa000c44dbe75ea7018f32ae999772 # [email protected]
with:
author_name: "ersilia-bot"
author_email: "[email protected]"
message: "updating readme [skip ci]"
repository: "ersilia-os/${{ github.event.repository.name }}"
github_token: ${{ secrets.GITHUB_TOKEN }}
amend: true
force: true
- name: Predict output
env:
MODEL_ID: ${{ github.event.repository.name }}
run: |
source activate
echo "Sample model id selected: $MODEL_ID"
ersilia -v fetch $MODEL_ID --repo_path .
ersilia -v serve $MODEL_ID
ersilia sample -n 5 -f input.csv
ersilia -v api -i input.csv
ersilia close
- name: Upload log output
uses: actions/upload-artifact@83fd05a356d7e2593de66fc9913b3002723633cb #pin v3.1.1
with:
name: debug-logs
retention-days: 1
path: /home/runner/eos/console.log
- name: Shuffle assignees
id: shuffle
run: |
export assignees=$(echo "${{ vars.assignees }}" | awk 'BEGIN {FS=","}; {srand();split($0,a,FS); print a[int(rand()*NF+1)]}')
echo "$assignees" >> $GITHUB_STEP_SUMMARY
echo "shuffled_assignee=$assignees" >> $GITHUB_OUTPUT
echo "shuffled_assignee=$assignees" >> $GITHUB_ENV
- name: Check for existing issue
id: check_issue
run: |
gh auth login --with-token <<< ${{ secrets.GITHUB_TOKEN }}
issue_number=$(gh issue list --limit 100 --search "${{ vars.test_issue_title }}" --json number --jq '.[0].number')
echo "::set-output name=issue_number::$issue_number"
- name: Create a Test issue
uses: actions-ecosystem/action-create-issue@b63bc2bbacb6a838dfe4a9f70da6665ae0962a49
id: create_issue
with:
github_token: ${{ secrets.github_token }}
title: ${{ vars.test_issue_title }}
assignees: |
${{ steps.shuffle.outputs.shuffled_assignee }}
body: |
This model is ready for testing. If you are assigned to this issue, please try it out using the CLI, Google Colab and DockerHub and let us know if it works!
labels: |
test
if: steps.check_issue.outputs.issue_number == ''