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Conda Install impossibible #2

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newkew opened this issue Dec 13, 2022 · 10 comments
Open

Conda Install impossibible #2

newkew opened this issue Dec 13, 2022 · 10 comments

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@newkew
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newkew commented Dec 13, 2022

Hi,

When I try to install with miniconda 3.7, it returns :
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed

step by step

conda create -n test_dhyana
(test_dhyana) C:\Users\Detecteurs>conda activate test_dhyana
(test_dhyana) C:\Users\Detecteurs>conda install -c conda-forge -c esrf-bcu -c tango-controls lima-camera-dhyana-tango

when I tried with lima-camera-basler-tango, it seems to be ok (although i have a dll error when I import Basler)

Kewin
@laurent-claustre
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Dear Kewin,
sorry for the late answer.
We just push new packages which should fix your issue, just create a new env. with packages. Install mamba in your base environment, this is faster than using conda for installation and to solve dependencies.
You no more need to set tango-controls channel since tango has move to conda-forge.

mamba create -n test_dhyana -c conda-forge -c esrf-bcu lima-camera-dhyana-tango

The sdk libraries are installed in your environment via the tucam-sdk conda package version 2.0.0-1, SDK version 2 is the only one working fine with dhyana camera V2.

Do not forget to follow the installation instruction from Tucam, and in particular to install /etc/tucam/ directory and set the udev rules for permission on USB devices.

@newkew
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Author

newkew commented Dec 15, 2022

Merci Laurent
I will try it tomorrow
noted, I m working with Windows

@laurent-claustre
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there is no package for windows and we never tested this camera on windows with Lima.
Sorry for this.

@newkew
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Author

newkew commented Dec 20, 2022

Hi Laurent,
I just tried it with Linux CentoS6.10 but conda install -c conda-forge -c esrf-bcu lima-camera-dhyana-tango returned
Solving environment: failed

@laurent-claustre
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Hi Kewin,
could you try to create/install with the same command? I did a try just now and it did work. To speed up the installation you should rather use mamba, install it in your base environment just before:

(base) blissadm@linuxlolo1:~$ conda create -n dhyana2 -c conda-forge -c esrf-bcu lima-camera-dhyana-tango
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done


==> WARNING: A newer version of conda exists. <==
  current version: 22.9.0
  latest version: 22.11.1

Please update conda by running

    $ conda update -n base -c conda-forge conda



## Package Plan ##

  environment location: /users/blissadm/conda/miniconda/envs/dhyana2

  added / updated specs:
    - lima-camera-dhyana-tango


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    blosc-1.21.3               |       hafa529b_0          39 KB  conda-forge
    lcms2-2.14                 |       hfd0df8a_1         235 KB  conda-forge
    libtiff-4.5.0              |       h82bc61c_0         398 KB  conda-forge
    libwebp-1.2.4              |       h1daa5a0_1          82 KB  conda-forge
    numpy-1.24.0               |   py39h223a676_0         6.4 MB  conda-forge
    openjpeg-2.5.0             |       hfec8fc6_2         344 KB  conda-forge
    pillow-9.2.0               |   py39h2320bf1_4        44.0 MB  conda-forge
    setuptools-65.6.3          |     pyhd8ed1ab_0         619 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        52.0 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge None
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu None
  alsa-lib           conda-forge/linux-64::alsa-lib-1.2.6.1-h7f98852_0 None
  attr               conda-forge/linux-64::attr-2.5.1-h166bdaf_1 None
  blas               conda-forge/linux-64::blas-1.1-openblas None
  blosc              conda-forge/linux-64::blosc-1.21.3-hafa529b_0 None
  bloscpack          conda-forge/noarch::bloscpack-0.16.0-py_1000 None
  boost              conda-forge/linux-64::boost-1.78.0-py39h7c9e3ff_4 None
  boost-cpp          conda-forge/linux-64::boost-cpp-1.78.0-h75c5d50_1 None
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h7f98852_4 None
  c-ares             conda-forge/linux-64::c-ares-1.18.1-h7f98852_0 None
  ca-certificates    conda-forge/linux-64::ca-certificates-2022.12.7-ha878542_0 None
  cbflib             esrf-bcu/linux-64::cbflib-0.9.7-h6578b86_0 None
  cpptango           conda-forge/linux-64::cpptango-9.3.5-he78764c_1 None
  dbus               conda-forge/linux-64::dbus-1.13.6-h5008d03_3 None
  deprecated         conda-forge/noarch::deprecated-1.2.13-pyh6c4a22f_0 None
  expat              conda-forge/linux-64::expat-2.5.0-h27087fc_0 None
  fftw               conda-forge/linux-64::fftw-3.3.10-nompi_hf0379b8_106 None
  font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 None
  font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0 None
  font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0 None
  font-ttf-ubuntu    conda-forge/noarch::font-ttf-ubuntu-0.83-hab24e00_0 None
  fontconfig         conda-forge/linux-64::fontconfig-2.14.1-hc2a2eb6_0 None
  fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0 None
  fonts-conda-forge  conda-forge/noarch::fonts-conda-forge-1-0 None
  freetype           conda-forge/linux-64::freetype-2.12.1-hca18f0e_1 None
  gettext            conda-forge/linux-64::gettext-0.21.1-h27087fc_0 None
  giflib             conda-forge/linux-64::giflib-5.2.1-h36c2ea0_2 None
  glib               conda-forge/linux-64::glib-2.74.1-h6239696_1 None
  glib-tools         conda-forge/linux-64::glib-tools-2.74.1-h6239696_1 None
  gsl                conda-forge/linux-64::gsl-2.2.1-blas_openblashddceaf2_6 None
  gst-plugins-base   conda-forge/linux-64::gst-plugins-base-1.20.3-hf6a322e_0 None
  gstreamer          conda-forge/linux-64::gstreamer-1.20.3-hd4edc92_2 None
  hdf5               conda-forge/linux-64::hdf5-1.10.6-nompi_h6a2412b_1114 None
  icu                conda-forge/linux-64::icu-70.1-h27087fc_0 None
  jack               conda-forge/linux-64::jack-1.9.18-h8c3723f_1002 None
  jpeg               conda-forge/linux-64::jpeg-9e-h166bdaf_2 None
  keyutils           conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0 None
  krb5               conda-forge/linux-64::krb5-1.19.3-h3790be6_0 None
  lcms2              conda-forge/linux-64::lcms2-2.14-hfd0df8a_1 None
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.39-hcc3a1bd_1 None
  lerc               conda-forge/linux-64::lerc-4.0.0-h27087fc_0 None
  libblas            conda-forge/linux-64::libblas-3.9.0-1_h86c2bf4_netlib None
  libcap             conda-forge/linux-64::libcap-2.64-ha37c62d_0 None
  libcblas           conda-forge/linux-64::libcblas-3.9.0-5_h92ddd45_netlib None
  libclang           conda-forge/linux-64::libclang-14.0.6-default_h2e3cab8_0 None
  libclang13         conda-forge/linux-64::libclang13-14.0.6-default_h3a83d3e_0 None
  libconfig          conda-forge/linux-64::libconfig-1.7.2-he870fd5_1 None
  libcups            conda-forge/linux-64::libcups-2.3.3-h3e49a29_2 None
  libcurl            conda-forge/linux-64::libcurl-7.86.0-h7bff187_1 None
  libdb              conda-forge/linux-64::libdb-6.2.32-h9c3ff4c_0 None
  libdeflate         conda-forge/linux-64::libdeflate-1.14-h166bdaf_0 None
  libedit            conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2 None
  libev              conda-forge/linux-64::libev-4.33-h516909a_1 None
  libevent           conda-forge/linux-64::libevent-2.1.10-h9b69904_4 None
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5 None
  libflac            conda-forge/linux-64::libflac-1.3.4-h27087fc_0 None
  libgcc-ng          conda-forge/linux-64::libgcc-ng-12.2.0-h65d4601_19 None
  libgfortran        conda-forge/linux-64::libgfortran-3.0.0-1 None
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-12.2.0-h69a702a_19 None
  libgfortran5       conda-forge/linux-64::libgfortran5-12.2.0-h337968e_19 None
  libglib            conda-forge/linux-64::libglib-2.74.1-h606061b_1 None
  libgomp            conda-forge/linux-64::libgomp-12.2.0-h65d4601_19 None
  libiconv           conda-forge/linux-64::libiconv-1.17-h166bdaf_0 None
  libjpeg-turbo      conda-forge/linux-64::libjpeg-turbo-2.1.4-h166bdaf_0 None
  liblapack          conda-forge/linux-64::liblapack-3.9.0-5_h92ddd45_netlib None
  libllvm14          conda-forge/linux-64::libllvm14-14.0.6-he0ac6c6_1 None
  libnghttp2         conda-forge/linux-64::libnghttp2-1.47.0-hdcd2b5c_1 None
  libnsl             conda-forge/linux-64::libnsl-2.0.0-h7f98852_0 None
  libnuma            conda-forge/linux-64::libnuma-2.0.16-h166bdaf_0 None
  libogg             conda-forge/linux-64::libogg-1.3.4-h7f98852_1 None
  libopus            conda-forge/linux-64::libopus-1.3.1-h7f98852_1 None
  libpng             conda-forge/linux-64::libpng-1.6.39-h753d276_0 None
  libpq              conda-forge/linux-64::libpq-14.5-h72a31a5_3 None
  libsndfile         conda-forge/linux-64::libsndfile-1.0.31-h9c3ff4c_1 None
  libsodium          conda-forge/linux-64::libsodium-1.0.18-h36c2ea0_1 None
  libsqlite          conda-forge/linux-64::libsqlite-3.40.0-h753d276_0 None
  libssh2            conda-forge/linux-64::libssh2-1.10.0-haa6b8db_3 None
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-12.2.0-h46fd767_19 None
  libtiff            conda-forge/linux-64::libtiff-4.5.0-h82bc61c_0 None
  libtool            conda-forge/linux-64::libtool-2.4.6-h9c3ff4c_1008 None
  libudev1           conda-forge/linux-64::libudev1-252-h166bdaf_0 None
  libuuid            conda-forge/linux-64::libuuid-2.32.1-h7f98852_1000 None
  libvorbis          conda-forge/linux-64::libvorbis-1.3.7-h9c3ff4c_0 None
  libwebp            conda-forge/linux-64::libwebp-1.2.4-h1daa5a0_1 None
  libwebp-base       conda-forge/linux-64::libwebp-base-1.2.4-h166bdaf_0 None
  libxcb             conda-forge/linux-64::libxcb-1.13-h7f98852_1004 None
  libxkbcommon       conda-forge/linux-64::libxkbcommon-1.0.3-he3ba5ed_0 None
  libxml2            conda-forge/linux-64::libxml2-2.10.3-h7463322_0 None
  libzlib            conda-forge/linux-64::libzlib-1.2.13-h166bdaf_4 None
  lima-camera-dhyana esrf-bcu/linux-64::lima-camera-dhyana-1.9.3-py39h2bc3f7f_0 None
  lima-camera-dhyan~ esrf-bcu/noarch::lima-camera-dhyana-tango-1.9.3-0 None
  lima-core          esrf-bcu/linux-64::lima-core-1.9.20-py39h2bc3f7f_5 None
  lima-tango-server  esrf-bcu/noarch::lima-tango-server-1.9.18-py_0 None
  lz4-c              conda-forge/linux-64::lz4-c-1.9.3-h9c3ff4c_1 None
  mysql-common       conda-forge/linux-64::mysql-common-8.0.31-haf5c9bc_0 None
  mysql-libs         conda-forge/linux-64::mysql-libs-8.0.31-h28c427c_0 None
  ncurses            conda-forge/linux-64::ncurses-6.3-h27087fc_1 None
  nspr               conda-forge/linux-64::nspr-4.35-h27087fc_0 None
  nss                conda-forge/linux-64::nss-3.82-he02c5a1_0 None
  numpy              conda-forge/linux-64::numpy-1.24.0-py39h223a676_0 None
  omniorb-libs       conda-forge/linux-64::omniorb-libs-4.2.5-h727a467_4 None
  openblas           conda-forge/linux-64::openblas-0.3.3-ha44fe06_1 None
  openjpeg           conda-forge/linux-64::openjpeg-2.5.0-hfec8fc6_2 None
  openssl            conda-forge/linux-64::openssl-1.1.1s-h0b41bf4_1 None
  pcre               conda-forge/linux-64::pcre-8.45-h9c3ff4c_0 None
  pcre2              conda-forge/linux-64::pcre2-10.40-hc3806b6_0 None
  pillow             conda-forge/linux-64::pillow-9.2.0-py39h2320bf1_4 None
  pip                conda-forge/noarch::pip-22.3.1-pyhd8ed1ab_0 None
  portaudio          conda-forge/linux-64::portaudio-19.6.0-h57a0ea0_5 None
  processlib         esrf-bcu/linux-64::processlib-1.8.6-py39h7703b5b_0 None
  pthread-stubs      conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001 None
  pulseaudio         conda-forge/linux-64::pulseaudio-14.0-h7f54b18_8 None
  pymemcache         conda-forge/noarch::pymemcache-4.0.0-pyhd8ed1ab_0 None
  pytango            conda-forge/linux-64::pytango-9.3.6-py39hf983217_2 None
  python             conda-forge/linux-64::python-3.9.15-h47a2c10_0_cpython None
  python-blosc       conda-forge/linux-64::python-blosc-1.10.6-py39h4661b88_1 None
  python_abi         conda-forge/linux-64::python_abi-3.9-3_cp39 None
  pyturbojpeg        conda-forge/noarch::pyturbojpeg-1.7.0-pyhec5db9e_0 None
  qt                 conda-forge/linux-64::qt-5.15.4-hf11cfaa_0 None
  qt-main            conda-forge/linux-64::qt-main-5.15.4-ha5833f6_2 None
  qt-webengine       conda-forge/linux-64::qt-webengine-5.15.4-hcbadb6c_3 None
  readline           conda-forge/linux-64::readline-8.1.2-h0f457ee_0 None
  setuptools         conda-forge/noarch::setuptools-65.6.3-pyhd8ed1ab_0 None
  sip                conda-forge/linux-64::sip-4.19.25-py39he80948d_1 None
  six                conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 None
  snappy             conda-forge/linux-64::snappy-1.1.9-hbd366e4_2 None
  sqlite             conda-forge/linux-64::sqlite-3.40.0-h4ff8645_0 None
  tk                 conda-forge/linux-64::tk-8.6.12-h27826a3_0 None
  tucam-sdk          esrf-bcu/linux-64::tucam-sdk-2.0.0-1 None
  tzdata             conda-forge/noarch::tzdata-2022g-h191b570_0 None
  wheel              conda-forge/noarch::wheel-0.38.4-pyhd8ed1ab_0 None
  wrapt              conda-forge/linux-64::wrapt-1.14.1-py39hb9d737c_1 None
  xcb-util           conda-forge/linux-64::xcb-util-0.4.0-h166bdaf_0 None
  xcb-util-image     conda-forge/linux-64::xcb-util-image-0.4.0-h166bdaf_0 None
  xcb-util-keysyms   conda-forge/linux-64::xcb-util-keysyms-0.4.0-h166bdaf_0 None
  xcb-util-renderut~ conda-forge/linux-64::xcb-util-renderutil-0.3.9-h166bdaf_0 None
  xcb-util-wm        conda-forge/linux-64::xcb-util-wm-0.4.1-h166bdaf_0 None
  xorg-libxau        conda-forge/linux-64::xorg-libxau-1.0.9-h7f98852_0 None
  xorg-libxdmcp      conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0 None
  xz                 conda-forge/linux-64::xz-5.2.6-h166bdaf_0 None
  zeromq             conda-forge/linux-64::zeromq-4.3.4-h9c3ff4c_1 None
  zlib               conda-forge/linux-64::zlib-1.2.13-h166bdaf_4 None
  zstd               conda-forge/linux-64::zstd-1.5.2-h6239696_4 None


Proceed ([y]/n)?

And the same using mamba:

(base) blissadm@linuxlolo1:~$ mamba create -n dhyana2 -c conda-forge -c esrf-bcu lima-camera-dhyana-tango

                  __    __    __    __
                 /  \  /  \  /  \  /  \
                /    \/    \/    \/    \
███████████████/  /██/  /██/  /██/  /████████████████████████
              /  / \   / \   / \   / \  \____
             /  /   \_/   \_/   \_/   \    o \__,
            / _/                       \_____/  `
            |/
        ███╗   ███╗ █████╗ ███╗   ███╗██████╗  █████╗
        ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗
        ██╔████╔██║███████║██╔████╔██║██████╔╝███████║
        ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║
        ██║ ╚═╝ ██║██║  ██║██║ ╚═╝ ██║██████╔╝██║  ██║
        ╚═╝     ╚═╝╚═╝  ╚═╝╚═╝     ╚═╝╚═════╝ ╚═╝  ╚═╝

        mamba (0.27.0) supported by @QuantStack

        GitHub:  https://github.com/mamba-org/mamba
        Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████


Looking for: ['lima-camera-dhyana-tango']

conda-forge/linux-64                                        Using cache
conda-forge/noarch                                          Using cache
esrf-bcu/linux-64                                             No change
esrf-bcu/noarch                                               No change
Transaction

  Prefix: /users/blissadm/conda/miniconda/envs/dhyana2

  Updating specs:

   - lima-camera-dhyana-tango


  Package                           Version  Build                    Channel                    Size
───────────────────────────────────────────────────────────────────────────────────────────────────────
  Install:
───────────────────────────────────────────────────────────────────────────────────────────────────────

  + _libgcc_mutex                       0.1  conda_forge              conda-forge/linux-64     Cached
  + _openmp_mutex                       4.5  2_gnu                    conda-forge/linux-64     Cached
  + alsa-lib                        1.2.6.1  h7f98852_0               conda-forge/linux-64     Cached
  + attr                              2.5.1  h166bdaf_1               conda-forge/linux-64     Cached
  + blas                                1.1  openblas                 conda-forge/linux-64     Cached
  + blosc                            1.21.3  hafa529b_0               conda-forge/linux-64       40kB
  + bloscpack                        0.16.0  py_1000                  conda-forge/noarch       Cached
  + boost                            1.78.0  py39h7c9e3ff_4           conda-forge/linux-64     Cached
  + boost-cpp                        1.78.0  h75c5d50_1               conda-forge/linux-64     Cached
  + bzip2                             1.0.8  h7f98852_4               conda-forge/linux-64     Cached
  + c-ares                           1.18.1  h7f98852_0               conda-forge/linux-64     Cached
  + ca-certificates               2022.12.7  ha878542_0               conda-forge/linux-64     Cached
  + cbflib                            0.9.7  h6578b86_0               esrf-bcu/linux-64        Cached
  + cpptango                          9.3.5  he78764c_1               conda-forge/linux-64     Cached
  + dbus                             1.13.6  h5008d03_3               conda-forge/linux-64     Cached
  + deprecated                       1.2.13  pyh6c4a22f_0             conda-forge/noarch       Cached
  + expat                             2.5.0  h27087fc_0               conda-forge/linux-64     Cached
  + fftw                             3.3.10  nompi_hf0379b8_106       conda-forge/linux-64     Cached
  + font-ttf-dejavu-sans-mono          2.37  hab24e00_0               conda-forge/noarch       Cached
  + font-ttf-inconsolata              3.000  h77eed37_0               conda-forge/noarch       Cached
  + font-ttf-source-code-pro          2.038  h77eed37_0               conda-forge/noarch       Cached
  + font-ttf-ubuntu                    0.83  hab24e00_0               conda-forge/noarch       Cached
  + fontconfig                       2.14.1  hc2a2eb6_0               conda-forge/linux-64     Cached
  + fonts-conda-ecosystem                 1  0                        conda-forge/noarch       Cached
  + fonts-conda-forge                     1  0                        conda-forge/noarch       Cached
  + freetype                         2.12.1  hca18f0e_1               conda-forge/linux-64     Cached
  + gettext                          0.21.1  h27087fc_0               conda-forge/linux-64     Cached
  + giflib                            5.2.1  h36c2ea0_2               conda-forge/linux-64     Cached
  + glib                             2.74.1  h6239696_1               conda-forge/linux-64     Cached
  + glib-tools                       2.74.1  h6239696_1               conda-forge/linux-64     Cached
  + gsl                               2.2.1  blas_openblashddceaf2_6  conda-forge/linux-64     Cached
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  + xcb-util-image                    0.4.0  h166bdaf_0               conda-forge/linux-64     Cached
  + xcb-util-keysyms                  0.4.0  h166bdaf_0               conda-forge/linux-64     Cached
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  + xcb-util-wm                       0.4.1  h166bdaf_0               conda-forge/linux-64     Cached
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  + zstd                              1.5.2  h6239696_4               conda-forge/linux-64     Cached

  Summary:

  Install: 144 packages

  Total download: 55MB

───────────────────────────────────────────────────────────────────────────────────────────────────────

Confirm changes: [Y/n]

@newkew
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newkew commented Dec 20, 2022

Thanks Laurent
It's work fine with Centos 7.9 from Virtualbox
and mamba create/install

Now I have another problem when I try to start device
=> importError /Lib64/Libm.so.6
Certainly a problem with virtual machin ?

Could you please give me the process to start device ?
In my env. I use => python (...)/envs/dhyana2/lib/python3.9/site-packages/Lima/Server/LimaCCDs.py dhyana.2 -v1

Kewin

@laurent-claustre
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you do not need to specify the path to the python script, in your environment just type:
LimaCCDs dhyana.2

@newkew
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newkew commented Jan 6, 2023

HI Laurent,

It's ok with Debian11 and mamba install
but with Dhyana v1 not with v2 (API problem ?)

I used the last libs from TUCSEN

et mes meilleurs voeux :)

@laurent-claustre
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Hi Kewin,
how is going?
did you get the camera working?

@newkew
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newkew commented Jan 17, 2023

Hi Laurent :)
I didn't take the time to work on it, the v1 works but not v2
In fact, I just wanted to test the "peakfinder" with dhyana

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