-
Notifications
You must be signed in to change notification settings - Fork 2
/
runtest.sh
23 lines (16 loc) · 1.54 KB
/
runtest.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
python3 phase_stitcher.py --nt 1 --input tests/inputs/haplotype_file01.txt --output outdir/egout1 --mat MA605 --pat Sp21 --f1Sample ms02g --culLH maxSum --lods 3
# Namespace(chr='', culLH='maxSum', f1Sample='ms02g', hapStats='no',
# input='tests/inputs/haplotype_file01.txt', lods='3', mat='MA605', nt='1',
# outPatMatID='pat,mat', output='outdir', pat='Sp21')
python3 phase_stitcher.py --nt 2 --input tests/inputs/haplotype_file01.txt --output outdir/egout2 --mat MA605,MA622 --pat Sp21,Sp164 --f1Sample ms02g --outPatMatID Sp,My --culLH maxSum --lods 3
# Namespace(chr='', culLH='maxSum', f1Sample='ms02g', hapStats='no',
# input='tests/inputs/haplotype_file01.txt', lods='3', mat='MA605,MA622', nt='2',
# outPatMatID='Sp,My', output='outdir/egout2', pat='Sp21,Sp164')
python3 phase_stitcher.py --nt 1 --input tests/inputs/haplotype_file02.txt --output outdir/egout3 --mat pre:MA,Nc --pat pre:Sp --f1Sample ms02g --culLH maxPd --lods 25
# Namespace(chr='', culLH='maxPd', f1Sample='ms02g', hapStats='no',
# input='tests/inputs/haplotype_file02.txt', lods='25', mat='pre:MA,Nc', nt='1',
# outPatMatID='pat,mat', output='outdir/egout3', pat='pre:Sp')
python3 phase_stitcher.py --nt 1 --input tests/inputs/haplotype_file02.txt --output outdir/egout4 --mat pre:MA,Nc --pat pre:Sp --f1Sample ms02g --culLH maxPd --lods 25 --hapStats yes --outPatMatID Sp,My
# Namespace(chr='', culLH='maxPd', f1Sample='ms02g', hapStats='yes',
# input='tests/inputs/haplotype_file02.txt', lods='25', mat='pre:MA,Nc', nt='1',
# outPatMatID='Sp,My', output='outdir/egout4', pat='pre:Sp')