ci.yaml

name: CI
on: push

jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.9]

    steps:
      - uses: actions/checkout@v2

      - uses: mamba-org/setup-micromamba@v1.8.1
        with:
          environment-file: environment.yml
          cache-environment: true

      - name: Check formatting
        shell: bash -l {0}
        run: |
          ufmt check flow_matching/ examples/

      - name: flake8 lint
        shell: bash -l {0}
        run: |
          flake8 flow_matching

      - name: Run tests
        shell: bash -l {0}
        run: |
          coverage run --include='flow_matching/**/*.py' -m unittest discover tests -v

      - name: Run notebooks
        run: |
          pip install jupyter
          for file in examples/*.ipynb; do
            jupyter nbconvert --execute --ExecutePreprocessor.timeout=300 "$file"
          done

      - name: Docstring Lint
        shell: bash -l {0}
        run: |
          pydoclint --style=google flow_matching

      - name: Build doc pages
        shell: bash -l {0}
        working-directory: docs
        run: |
          micromamba env update --file deps.yml
          PYTHONPATH=../:. make html

      - name: coverage
        shell: bash -l {0}
        run: |
          pip install coverage-badge
          coverage html --include='flow_matching/**/*.py' -d docs/build/html/coverage
          coverage-badge -o docs/build/html/coverage/coverage-badge.svg
          rm docs/build/html/coverage/.gitignore

      - name: Deploy docs to GitHub Pages
        uses: peaceiris/actions-gh-pages@v3
        if: github.ref == 'refs/heads/main' || github.ref == 'refs/heads/coverage'
        with:
          github_token: ${{ secrets.GITHUB_TOKEN }}
          publish_dir: ./docs/build/html