First name:
@@ -9681,10 +9687,11 @@ const generateContributorTableRow = (contributorObj, contributorIndex) => {
${contributorRoleString}
- ${contributorObjIsValid
- ? `Valid `
- : `Needs Modification `
- }
+ ${
+ contributorObjIsValid
+ ? `Valid `
+ : `Needs Modification `
+ }
- ${isFair
- ? `Valid `
- : `Needs modification `
- }
+ ${
+ isFair
+ ? `Valid `
+ : `Needs modification `
+ }
{
${subject.samples
- .map((sample) => {
- return generateSampleRowElement(sample);
- })
- .join("\n")}
+ .map((sample) => {
+ return generateSampleRowElement(sample);
+ })
+ .join("\n")}
`;
@@ -10418,10 +10426,10 @@ const openModifySampleMetadataPage = (sampleMetadataID, samplesSubjectID) => {
document.getElementById("guided-bootbox-wasDerivedFromSample").innerHTML = `
Sample not derived from another sample
${samplesBesidesCurrSample
- .map((sample) => {
- return `${sample.sampleName} `;
- })
- .join("\n")}))
+ .map((sample) => {
+ return `${sample.sampleName} `;
+ })
+ .join("\n")}))
`;
//Add protocol titles to the protocol dropdown
@@ -11752,10 +11760,11 @@ const guidedOpenEntityAdditionSwal = async (entityName) => {
};
`${entityNameSingular} addition`;
const additionConfirmed = await Swal.fire({
- title: `${entityName.startsWith("sub-")
+ title: `${
+ entityName.startsWith("sub-")
? `Add samples taken from ${entityName}`
: `${entityNameSingular} addition`
- }`,
+ }`,
html: `
Enter a unique ${entityNameSingular} ID and press enter or the
@@ -12505,7 +12514,7 @@ const guidedAddUserPermission = (newUserPermissionObj) => {
window.sodaJSONObj["digital-metadata"]["user-permissions"].push(newUserPermissionObj);
renderPermissionsTable();
};
-const guidedRemoveUserPermission = (userParentElement) => { };
+const guidedRemoveUserPermission = (userParentElement) => {};
const guidedAddTeamPermission = (newTeamPermissionObj) => {
//If an existing team with the same ID already exists, update the existing team's position
@@ -12523,7 +12532,7 @@ const guidedAddTeamPermission = (newTeamPermissionObj) => {
window.sodaJSONObj["digital-metadata"]["team-permissions"].push(newTeamPermissionObj);
renderPermissionsTable();
};
-const guidedRemoveTeamPermission = (teamParentElement) => { };
+const guidedRemoveTeamPermission = (teamParentElement) => {};
const setGuidedLicense = (newLicense) => {
window.sodaJSONObj["digital-metadata"]["license"] = "Creative Commons Attribution";
@@ -12558,8 +12567,8 @@ const renderSamplesHighLevelFolderAsideItems = (highLevelFolderName) => {
for (const [poolName, subjects] of Object.entries(subjectsWithSamplesInPools)) {
asideElementTemplateLiteral += `
${subjects
- .map((subject) => {
- return `
+ .map((subject) => {
+ return `
@@ -12567,19 +12576,19 @@ const renderSamplesHighLevelFolderAsideItems = (highLevelFolderName) => {
${subject.samples
- .map((sample) => {
- return `
+ .map((sample) => {
+ return `
${sample}
`;
- })
- .join("\n")}
+ })
+ .join("\n")}
`;
- })
- .join("\n")}`;
+ })
+ .join("\n")}`;
}
//filter out subjects that are not in a pool
@@ -12596,16 +12605,16 @@ const renderSamplesHighLevelFolderAsideItems = (highLevelFolderName) => {
${subject.samples
- .map((sample) => {
- return `
+ .map((sample) => {
+ return `
${sample}
`;
- })
- .join("\n")}
+ })
+ .join("\n")}
`;
}
@@ -12670,8 +12679,9 @@ const renderSubjectsHighLevelFolderAsideItems = (highLevelFolderName) => {
${subject.subjectName}
`;
})
@@ -12834,7 +12844,7 @@ const renderSubjectsMetadataAsideItems = async () => {
if (
!subjectsFormNames.includes(
window.subjectsTableData[0][i].charAt(0).toUpperCase() +
- window.subjectsTableData[0][i].slice(1)
+ window.subjectsTableData[0][i].slice(1)
) ||
!subjectsFormNames.includes(window.subjectsTableData[0][i])
) {
@@ -12979,7 +12989,7 @@ const renderSamplesMetadataAsideItems = async () => {
!samplesFormNames.includes(window.samplesTableData[0][i]) ||
!samplesFormNames.includes(
window.samplesTableData[0][i].charAt(0).toUpperCase() +
- window.samplesTableData[0][i].slice(1)
+ window.samplesTableData[0][i].slice(1)
)
) {
window.addCustomHeader("samples", window.samplesTableData[0][i], "guided");
@@ -13104,8 +13114,8 @@ $("#guided-button-add-permission-user-or-team").on("click", function () {
) {
throw `${newPermissionElement.text().trim()} is designated as the PI owner.
To designate them as a ${newPermissionRoleElement
- .val()
- .trim()}, go back and remove them as the PI owner.`;
+ .val()
+ .trim()}, go back and remove them as the PI owner.`;
}
if (newPermissionElement[0].getAttribute("permission-type") == "user") {
@@ -15331,28 +15341,31 @@ const hideDatasetMetadataGenerationTableRows = (destination) => {
};
const guidedAssignCollaborators = async (destination) => {
- let assignCollaboratorsUploadText = document.getElementById("guided-assign-collaborators-generation-text");
+ let assignCollaboratorsUploadText = document.getElementById(
+ "guided-assign-collaborators-generation-text"
+ );
if (destination !== "Pennsieve") {
- return
+ return;
}
- document
- .getElementById("guided-assign-collaborators-generation-tr")
- .classList.remove("hidden");
+ document.getElementById("guided-assign-collaborators-generation-tr").classList.remove("hidden");
assignCollaboratorsUploadText.innerHTML = "Assigning Collaborators...";
guidedUploadStatusIcon("guided-assign-collaborators-generation-status", "loading");
- let id = window.sodaJSONObj["digital-metadata"]["pennsieve-dataset-id"]
- // assign collaborators
+ let id = window.sodaJSONObj["digital-metadata"]["pennsieve-dataset-id"];
+ // assign collaborators
try {
- await client.put(`/manage_datasets/datasets/${id}/contributors`, {contributorIds: window.sodaJSONObj["dataset-metadata"]["description-metadata"]["contributors"]});
+ await client.put(`/manage_datasets/datasets/${id}/contributors`, {
+ contributorIds:
+ window.sodaJSONObj["dataset-metadata"]["description-metadata"]["contributors"],
+ });
} catch (error) {
const emessage = userErrorMessage(error);
- clientError(error)
+ clientError(error);
guidedUploadStatusIcon("guided-assign-collaborators-generation-status", "error");
assignCollaboratorsUploadText.innerHTML = `Failed to assign collaborators`;
throw new Error(emessage);
}
-}
+};
const guidedPennsieveDatasetUpload = async () => {
guidedSetNavLoadingState(true);
@@ -15422,7 +15435,7 @@ const guidedPennsieveDatasetUpload = async () => {
);
await guidedGenerateSubjectsMetadata("Pennsieve");
- await guidedAssignCollaborators("Pennsieve")
+ await guidedAssignCollaborators("Pennsieve");
await guidedGenerateSamplesMetadata("Pennsieve");
await guidedGenerateSubmissionMetadata("Pennsieve");
await guidedGenerateDatasetDescriptionMetadata("Pennsieve");
@@ -16489,8 +16502,8 @@ $("#guided-save-banner-image").click(async (event) => {
} else {
$("#guided-para-dataset-banner-image-status").html(
" " +
- "Dimensions of cropped area must be at least 512 px" +
- " "
+ "Dimensions of cropped area must be at least 512 px" +
+ ""
);
}
} else {
diff --git a/src/renderer/src/sections/guided_mode/guided_curate_dataset.html b/src/renderer/src/sections/guided_mode/guided_curate_dataset.html
index d491c985b..7d9150eff 100644
--- a/src/renderer/src/sections/guided_mode/guided_curate_dataset.html
+++ b/src/renderer/src/sections/guided_mode/guided_curate_dataset.html
@@ -5703,12 +5703,14 @@ Generating your dataset on Pennsieve
- Assigning Collaborators
+
+ Assigning Collaborators
+
-
-
+ id="guided-assign-collaborators-generation-status"
+ >