setup.py

import os
import codecs
from setuptools import setup

here = os.path.abspath(os.path.dirname(__file__))
with codecs.open(os.path.join(here, "README.rst"), encoding="utf-8") as f:
    long_description = f.read()

setup(
    name="stdpopsim",
    description="A library of population genetic simulation models",
    long_description=long_description,
    author="PopSim Consortium",
    # TODO probably should have a different email address?
    author_email="popgen_benchmark@lists.uoregon.edu",
    classifiers=[
        "Development Status :: 4 - Beta",
        "Intended Audience :: Developers",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
        "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.7",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
    ],
    keywords="simulations, recombination map, models",
    packages=["stdpopsim"],
    include_package_data=True,
    entry_points={
        "console_scripts": [
            "stdpopsim=stdpopsim.cli:stdpopsim_main",
        ]
    },
    python_requires=">=3.7",
    # NOTE: make sure this is the 'attrs' package, not 'attr'!
    install_requires=[
        "msprime>=1.0.4",
        "attrs>=19.1.0",
        "appdirs",
        "humanize",
        "pyslim>=0.600",
        "pandas",
        "zarr",
        "numpy",
    ],
    url="https://github.com/popsim-consortium/stdpopsim",
    project_urls={
        "Bug Reports": "https://github.com/popsim-consortium/stdpopsim/issues",
        "Source": "https://github.com/popsim-consortium/stdpopsim",
    },
    license="GNU GPLv3+",
    platforms=["POSIX", "MacOS X", "Windows"],
    setup_requires=["setuptools_scm"],
    use_scm_version={"write_to": "stdpopsim/_version.py"},
)