_pkgdown.yml

authors:
  Federico Marini:
    href: https://federicomarini.github.io

template:
  params:
    bootswatch: cosmo
    
navbar:
  structure:
    left:
    - home
    - intro
    - reference
    - articles
    - tutorials
    - news
    right: github
  components:
    home:
      icon: fa-home fa-lg
      href: index.html
    reference:
      text: Reference
      href: reference/index.html
    articles:
      text: Articles
      menu:
      - text: ideal User's Guide
        href: articles/ideal-usersguide.html
    github:
      icon: fa-github fa-lg
      href: https://github.com/federicomarini/ideal

reference:
- title: The ideal package
  desc: Main functions and info on the `ideal` package
  contents:
  - '`ideal`'
  - '`ideal-pkg`'
- title: Working with Differentially Expressed genes
  desc: Functions for extracting and plotting overviews of Differentially Expressed genes
  contents:
  - '`deseqresult2DEgenes`'
  - '`deseqresult2tbl`'
  - '`plot_ma`'
  - '`plot_volcano`'
  - '`ggplotCounts`'
- title: Functional interpretation
  desc: Functions for working performing functional interpretation
  contents:
  - '`goseqTable`'
  - '`read_gmt`'
  - '`sig_heatmap`'
- title: Miscellaneous functions
  desc: Miscellaneous functions used in the `ideal` package
  contents:
  - '`sepguesser`'
  - '`wrapup_for_iSEE`'
- title: Deprecated functions in ideal
  desc: ~
  contents:
  - '`deprecated`'