Error in if (rvs != "No RAW file specified!") { : the condition has length > 1

[xianxiongma]

S <- rawrr::sampleFilePath() |> rawrr::readSpectrum(scan = 1:9)
Error in if (rvs != "No RAW file specified!") { : the condition has length > 1
Can you tell me how to deal with it

[cpanse]

can you please provide 1. OS 2. rawrr version and 3. the output of sessionInfo() C

[cpanse]

what is the output of rawrr::sampleFilePath() ?

[xianxiongma]

what is the output of rawrr::sampleFilePath() ?

S <- rawrr::sampleFilePath()
S
[1] "D:/ProgramFiles/R/R-4.2.0/library/rawrr/extdata/sample.raw"

[xianxiongma]

can you please provide 1. OS 2. rawrr version and 3. the output of sessionInfo() C

sessionInfo()
R version 4.2.0 (2022-04-22 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale:
[1] LC_COLLATE=Chinese (Simplified)_China.utf8 LC_CTYPE=Chinese (Simplified)_China.utf8
[3] LC_MONETARY=Chinese (Simplified)_China.utf8 LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.utf8

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] rawrr_1.8.1

loaded via a namespace (and not attached):
[1] compiler_4.2.0 tools_4.2.0

[cpanse]

can you please rerun rawrr::installRawrrExe() and send me the output.

[xianxiongma]

can you please rerun rawrr::installRawrrExe() and send me the output.

rawrr::installRawrrExe()
trying URL 'https://github.com/fgcz/rawrr/releases/download/1.7.10/rawrr.1.7.10.exe'
Content type 'application/octet-stream' length 28672 bytes (28 KB)
downloaded 28 KB

MD5 5c3b6d0135ffe550bc04615cfc77aaba C:\Users\Administrator\AppData\Local/R/cache/R/rawrr/rawrrassembly/rawrr.exe
[1] 0

[cpanse]

so far this looks good. can you please try some other functions?

f <- rawrr::sampleFilePath()
rawrr::readFileHeader(f)
rawrr::readIndex(f) |> head()
rawrr::readSpectrum(f, scan = 1:9)

if it still does not work, I would propose a quick zoom.

C

[xianxiongma]

Still reporting the same error, I still can't run the example

rawrr::readFileHeader(f)
Error in if (rvs != "No RAW file specified!") { :
the condition has length > 1

rawrr::readIndex(f) |> head()
Error in if (rvs != "No RAW file specified!") { :
the condition has length > 1

[xianxiongma]

so far this looks good. can you please try some other functions?

f <- rawrr::sampleFilePath()
rawrr::readFileHeader(f)
rawrr::readIndex(f) |> head()
rawrr::readSpectrum(f, scan = 1:9)

if it still does not work, I would propose a quick zoom.

C

I ran in both computers, reported the same error, can you help me solve it?

[cpanse]

@xianxiongma quick zoom in 15minutes? 0710 UTC
https://ethz.zoom.us/j/63334146797

[xianxiongma]

@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797

Quick zoom? I don't understand, what should I do? I can't open the above URL

[xianxiongma]

@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797

Quick zoom? I don't understand, what should I do? I can't open the above URL

I just want to how to edit obitrap raw file

[cpanse]

@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797

Quick zoom? I don't understand, what should I do? I can't open the above URL
I wonder if we can have a video session (using zoom) to fix the issue. would that work for you?

[cpanse]

@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797

Quick zoom? I don't understand, what should I do? I can't open the above URL

I just want to how to edit obitrap raw file

of note, rawrr can only read Orbitrap data.

[xianxiongma]

@xianxiongma quick zoom in 15minutes? 0710 UTC https://ethz.zoom.us/j/63334146797

Quick zoom? I don't understand, what should I do? I can't open the above URL
I wonder if we can have a video session (using zoom) to fix the issue. would that work for you?

No problem!

[jjGG]

Hello @xianxiongma maybe you could try to set your region, location and language format to US and the number format to "point" as separator and not "comma".
best regards
jonas