New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

What data to use for skills course? #3

Open

k8hertweck opened this issue Feb 19, 2021 · 2 comments

Contributor

k8hertweck commented Feb 19, 2021

mouse and/or human (one for in-class, another for challenge exercises)
subset by extracting only one chromosome, or a set of genes
where to obtain reference data? Whole genome or custom set? Shared location or each person download on their own?

Contributor Author

k8hertweck commented Feb 19, 2021

Ideally a two way comparison, 3x3 treatments, 2 pass.

Contributor Author

k8hertweck commented Feb 24, 2021

Reanalysis of mouse ENCODE data, which explores batch effects, species comparisons, and tissue comparisons

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment