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setup.cfg
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setup.cfg
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[bumpversion]
current_version = 0.22.1
commit = True
tag = True
parse = (?P<major>\d+)
\.(?P<minor>\d+)
\.(?P<patch>\d+)
(?P<release>[a]*)(?P<num>\d*)
serialize =
{major}.{minor}.{patch}{release}{num}
{major}.{minor}.{patch}
tag_name = {new_version}
[metadata]
name = cobra
url = https://opencobra.github.io/cobrapy
download_url = https://pypi.org/project/cobra
project_urls =
Source Code = https://github.com/opencobra/cobrapy
Documentation = https://cobrapy.readthedocs.io
Bug Tracker = https://github.com/opencobra/cobrapy/issues
author = The cobrapy core development team.
author_email = [email protected]
maintainer = Moritz E. Beber
maintainer_email = [email protected]
classifiers =
Development Status :: 5 - Production/Stable
Intended Audience :: Science/Research
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)
Natural Language :: English
Operating System :: OS Independent
Programming Language :: Python :: 3.6
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Programming Language :: Python :: Implementation :: CPython
Topic :: Scientific/Engineering :: Bio-Informatics
license = LGPL-2.0-or-later OR GPL-2.0-or-later
description = COBRApy is a package for constraint-based modeling of metabolic networks.
long_description = file: README.rst, INSTALL.rst
long_description_content_type = text/x-rst
keywords =
metabolism
biology
constraint-based
linear programming
mixed-integer
optimization
flux-balance analysis
reconstruction
[options]
zip_safe = True
install_requires =
appdirs ~=1.4
depinfo
diskcache ~=5.0
future
httpx ~=0.14
importlib_resources
numpy ~=1.13
optlang ~=1.5
pandas ~=1.0
pydantic ~=1.6
python-libsbml ==5.19.0
rich >=8.0
ruamel.yaml ~=0.16
swiglpk
tests_require =
tox
packages = find:
package_dir =
= src
[options.packages.find]
where = src
[options.package_data]
cobra =
io/*.json
test/data/*
[options.extras_require]
array =
scipy
development =
black
bumpversion
isort
tox
[bdist_wheel]
universal = 1
[bumpversion:part:release]
optional_value = placeholder
first_value = placeholder
values =
placeholder
a
[bumpversion:file:setup.py]
search = version="{current_version}"
replace = version="{new_version}"
[bumpversion:file:src/cobra/__init__.py]
search = __version__ = "{current_version}"
replace = __version__ = "{new_version}"