From 03fccde1e22a00af1ec11e7997c1785028e43287 Mon Sep 17 00:00:00 2001 From: Seth Carbon Date: Sun, 11 Aug 2024 16:01:16 -0700 Subject: [PATCH] alter the creation of the noiea version to something trivial, as the files are now the same (empty) and it seems to be tripping up for some reason; for geneontology/pipeline#382 --- pipeline/Makefile | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/pipeline/Makefile b/pipeline/Makefile index 865a7f39..b692d1f6 100644 --- a/pipeline/Makefile +++ b/pipeline/Makefile @@ -112,13 +112,14 @@ SUPPRESS_THESE_TAGS = $(foreach tag,$(GORULE_TAGS_TO_SUPPRESS),--suppress-rule-r GOA_UNIPROT_ALL = target/groups/goa/goa_uniprot_all_noiea.gpi target/groups/goa/goa_uniprot_all_noiea.gpad target/groups/goa/goa_uniprot_all_noiea_cam.ttl -# target/groups/goa/goa_uniprot_all.gaf.gz +# gzip -dcf target/groups/goa/goa_uniprot_all-src.gaf.gz | ./util/goa_filter -v report=target/groups/goa/goa_uniprot_all_skipped.report -v noiea=target/groups/goa/goa_uniprot_all_noiea.gaf > target/groups/goa/goa_uniprot_all.gaf.tmp +# mv target/groups/goa/goa_uniprot_all.gaf.tmp target/groups/goa/goa_uniprot_all.gaf +# gzip -cf target/groups/goa/goa_uniprot_all.gaf > target/groups/goa/goa_uniprot_all.gaf.gz +# gzip -cf target/groups/goa/goa_uniprot_all_noiea.gaf > target/groups/goa/goa_uniprot_all_noiea.gaf.gz +# rm -f target/groups/goa/goa_uniprot_all-src.gaf target/groups/goa/goa_uniprot_all.gaf || true target/groups/goa/goa_uniprot_all_noiea.gaf: target/alltaxons.txt target/groups/goa/goa_uniprot_all-src.gaf.gz - gzip -dcf target/groups/goa/goa_uniprot_all-src.gaf.gz | ./util/goa_filter -v report=target/groups/goa/goa_uniprot_all_skipped.report -v noiea=target/groups/goa/goa_uniprot_all_noiea.gaf > target/groups/goa/goa_uniprot_all.gaf.tmp - mv target/groups/goa/goa_uniprot_all.gaf.tmp target/groups/goa/goa_uniprot_all.gaf - gzip -cf target/groups/goa/goa_uniprot_all.gaf > target/groups/goa/goa_uniprot_all.gaf.gz - gzip -cf target/groups/goa/goa_uniprot_all_noiea.gaf > target/groups/goa/goa_uniprot_all_noiea.gaf.gz - rm -f target/groups/goa/goa_uniprot_all-src.gaf target/groups/goa/goa_uniprot_all.gaf || true + cp target/groups/goa/goa_uniprot_all-src.gaf.gz target/groups/goa/goa_uniprot_all.gaf.gz + cp target/groups/goa/goa_uniprot_all-src.gaf.gz target/groups/goa/goa_uniprot_all_noiea.gaf.gz RDF_GEN = rdfgen.py target/groups/goa/goa_uniprot_all_noiea_cam.ttl: target/go-ontology.json target/groups/goa/goa_uniprot_all_noiea.gaf