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Ontology currently causes MGI:MGI:1336882 model to fail ShEx #61

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dustine32 opened this issue Oct 4, 2019 · 0 comments
Open

Ontology currently causes MGI:MGI:1336882 model to fail ShEx #61

dustine32 opened this issue Oct 4, 2019 · 0 comments
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ShEx Deals with ShEx-based validation

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@dustine32
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Recording this here for testing again later after the "cell component-to-anatomy" bridge is plugged into the ontology(ies). From noctua-dev model MGI:MGI:1336882:

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Images here seem to say that the CL term "pancreatic acinar cell" CL:0002064 is not recognized as either a CellularComponent or AnatomicalEntity shape. It should be an AnatomicalEntity and have a path to CARO:0000000 or otherwise have some valid connection to the AnatomicalEntity shape in the ShEx spec. Perhaps this term is special; will need to inspect the ontology to confirm.

We can close this once either the ontology is "fixed" or the model is restructured to fit the spec.
@dustine32 dustine32 added the ShEx Deals with ShEx-based validation label Oct 4, 2019
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