diff --git a/tests/main.imputation.nf.test b/tests/main.imputation.nf.test index c1bdfcd..6c85552 100644 --- a/tests/main.imputation.nf.test +++ b/tests/main.imputation.nf.test @@ -53,7 +53,7 @@ nextflow_pipeline { assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT } - with(zip.extract("chr20.info.gz").vcf) { + with(zip.extract("chr20.info.vcf.gz").vcf) { assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT } @@ -110,7 +110,7 @@ nextflow_pipeline { assert variantCount == 7735 } - with(zip.extract("chr20.info.gz").vcf) { + with(zip.extract("chr20.info.vcf.gz").vcf) { assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT } @@ -183,7 +183,7 @@ nextflow_pipeline { assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT } - with(zip.extract("chr20.info.gz").vcf) { + with(zip.extract("chr20.info.vcf.gz").vcf) { assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT } @@ -231,7 +231,7 @@ nextflow_pipeline { assert variantCount == TOTAL_REFPANEL_CHR20_B37 } - with(zip.extract("chr20.info.gz").vcf) { + with(zip.extract("chr20.info.vcf.gz").vcf) { assert variantCount == TOTAL_REFPANEL_CHR20_B37 } @@ -278,7 +278,7 @@ nextflow_pipeline { assert variantCount == TOTAL_REFPANEL_CHR20_B37 } - with(path("${outputDir}/chr20.info.gz").vcf) { + with(path("${outputDir}/chr20.info.vcf.gz").vcf) { assert variantCount == TOTAL_REFPANEL_CHR20_B37 } @@ -327,7 +327,7 @@ nextflow_pipeline { assert variantCount == TOTAL_REFPANEL_CHR20_B37 } - with(zip.extract("chr20.info.gz").vcf) { + with(zip.extract("chr20.info.vcf.gz").vcf) { assert variantCount == TOTAL_REFPANEL_CHR20_B37 } @@ -422,7 +422,7 @@ nextflow_pipeline { assert variantCount < TOTAL_REFPANEL_CHR20_B37 } - with(zip.extract("chr20.info.gz").vcf) { + with(zip.extract("chr20.info.vcf.gz").vcf) { assert variantCount == file.variantCount }