From 43d5cc0d5f7a316a5d0590cb505fe1d055adb36d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Sch=C3=B6nherr?= <seb.schoenherr@gmail.com>
Date: Tue, 1 Oct 2024 16:18:27 +0200
Subject: [PATCH] Fix info filename

---
 tests/main.imputation.nf.test | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/tests/main.imputation.nf.test b/tests/main.imputation.nf.test
index c1bdfcd..6c85552 100644
--- a/tests/main.imputation.nf.test
+++ b/tests/main.imputation.nf.test
@@ -53,7 +53,7 @@ nextflow_pipeline {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT
             }
             
-            with(zip.extract("chr20.info.gz").vcf) {
+            with(zip.extract("chr20.info.vcf.gz").vcf) {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT
             }
 
@@ -110,7 +110,7 @@ nextflow_pipeline {
                 assert variantCount == 7735
             }
 
-            with(zip.extract("chr20.info.gz").vcf) {
+            with(zip.extract("chr20.info.vcf.gz").vcf) {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT
             }
 
@@ -183,7 +183,7 @@ nextflow_pipeline {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT
             }
 
-            with(zip.extract("chr20.info.gz").vcf) {
+            with(zip.extract("chr20.info.vcf.gz").vcf) {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37 + ONLY_IN_INPUT
             }
 
@@ -231,7 +231,7 @@ nextflow_pipeline {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37
             }
 
-            with(zip.extract("chr20.info.gz").vcf) {
+            with(zip.extract("chr20.info.vcf.gz").vcf) {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37
             }         
 
@@ -278,7 +278,7 @@ nextflow_pipeline {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37
             }
 
-            with(path("${outputDir}/chr20.info.gz").vcf) {
+            with(path("${outputDir}/chr20.info.vcf.gz").vcf) {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37
             }
 
@@ -327,7 +327,7 @@ nextflow_pipeline {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37
             }
 
-            with(zip.extract("chr20.info.gz").vcf) {
+            with(zip.extract("chr20.info.vcf.gz").vcf) {
                 assert variantCount == TOTAL_REFPANEL_CHR20_B37
             }
 
@@ -422,7 +422,7 @@ nextflow_pipeline {
                 assert variantCount < TOTAL_REFPANEL_CHR20_B37
             }
 
-            with(zip.extract("chr20.info.gz").vcf) {
+            with(zip.extract("chr20.info.vcf.gz").vcf) {
                 assert variantCount == file.variantCount
             }