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Gene-level analysis #70

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filosi opened this issue Jun 19, 2023 · 1 comment
Closed

Gene-level analysis #70

filosi opened this issue Jun 19, 2023 · 1 comment

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@filosi
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filosi commented Jun 19, 2023

An error is thrown when using plink set files divided by chromosome on gene-level analysis.
In particular for:
genotype_association=<mydir>/chr*.{bim,bed,fam}
Error on REGENIE_STEP2_GENE_TESTS:
chr1.bed Not Found

When running with:
genotype_association=<mydir>/chr1.{bim,bed,fam}

Everything goes fine.
@filosi filosi mentioned this issue Jun 22, 2023
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@seppinho
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This has been fixed by supporting VCF and BGEN for gene-based testing in #92

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@seppinho @filosi