From 44fc75f166d17483bf669e8b8f0a46373a78361f Mon Sep 17 00:00:00 2001 From: Michele Date: Fri, 15 Dec 2023 11:23:19 +0100 Subject: [PATCH 1/2] Update docker with regenie v3.4 --- Dockerfile | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/Dockerfile b/Dockerfile index 5d7c134..95939a4 100644 --- a/Dockerfile +++ b/Dockerfile @@ -45,12 +45,12 @@ RUN jbang export portable -O=RegenieValidateInput.jar RegenieValidateInput.java # Install regenie (not as conda package available) WORKDIR "/opt" -ENV REGENIE_VERSION="v3.3" +ENV REGENIE_VERSION="v3.4" RUN mkdir regenie && cd regenie && \ wget https://github.com/rgcgithub/regenie/releases/download/${REGENIE_VERSION}/regenie_${REGENIE_VERSION}.gz_x86_64_Linux.zip && \ - unzip -q regenie_v3.*.gz_x86_64_Linux.zip && \ - rm regenie_v3.*.gz_x86_64_Linux.zip && \ - mv regenie_v3.*.gz_x86_64_Linux regenie && \ + unzip -q regenie_${REGENIE_VERSION}.gz_x86_64_Linux.zip && \ + rm regenie_${REGENIE_VERSION}.gz_x86_64_Linux.zip && \ + mv regenie_${REGENIE_VERSION}.gz_x86_64_Linux regenie && \ chmod +x regenie -ENV PATH="/opt/regenie/:${PATH}" +ENV PATH="/opt/regenie/:${PATH}" \ No newline at end of file From 77a1293413248ef951f302586505a26e23eeb6f6 Mon Sep 17 00:00:00 2001 From: Michele Date: Fri, 15 Dec 2023 12:17:24 +0100 Subject: [PATCH 2/2] Update Ubuntu version to 22.04 --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 95939a4..66b5e01 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM ubuntu:18.04 +FROM ubuntu:22.04 COPY environment.yml . # Install miniconda