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lines changed Original file line number Diff line number Diff line change @@ -43,14 +43,14 @@ Umi-pipeline-nf orignates from a snakemake-based analysis pipeline ([pipeline-um
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2 . Download the pipeline and test it on a [ minimal dataset] ( data/info.txt ) with a single command.
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``` bash
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- nextflow run genepi/umi-pipeline-nf -r v0.2.0 -profile test,docker
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+ nextflow run genepi/umi-pipeline-nf -r v0.2.1 -profile test,docker
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```
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3 . Start running your own analysis!
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3.1 Download and adapt the config/custom.config with paths to your data (relative and absolute paths possible).
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``` bash
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- nextflow run genepi/umi-pipeline-nf -r v0.2.0 -c < custom.config> -profile custom,< docker,singularity>
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+ nextflow run genepi/umi-pipeline-nf -r v0.2.1 -c < custom.config> -profile custom,< docker,singularity>
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```
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## Citation
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// NEXTFLOW MANIFEST
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manifest {
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name = ' umi-pipeline-nf'
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- version = ' 0.2.0 '
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+ version = ' 0.2.1 '
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description = ' Nextflow pipeline to analyze umi amplicon data'
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author = ' Stephan Amstler'
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homePage = ' https://github.com/AmstlerStephan/umi-pipeline-nf.git'
@@ -67,7 +67,7 @@ params {
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// Load base.config by default for all pipelines
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includeConfig " ${ baseDir} /config/base.config"
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- process. container = ' quay.io/genepi/umi-pipeline-nf:v0.2.0 '
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+ process. container = ' quay.io/genepi/umi-pipeline-nf:v0.2.1 '
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profiles {
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