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Copy pathtrackDb.txt
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executable file
·309 lines (253 loc) · 6.7 KB
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#----------------------
# Gysling Lab
#----------------------
###Motifs###
#No tengo suficiente memoria para generar el bigbed solucion --> http://www.mail-archive.com/genome@lists.soe.ucsc.edu/msg00638.html
#track SRS_minus
#bigDataUrl SRS.bb
#shortLabel Splicing Regularory Sequences
#longLabel ESE, ESS and ISE Hexamers
#type bigBed 12
#itemRgb on
track ESE_minus
bigDataUrl ESE.minus.bw
shortLabel ESE minus
longLabel Exonic Splicing Enhancer minus strand
type bigWig
color 255,0,0
configurable on
maxHeightPixels 30:30:30
autoScale on
track ESS_minus
bigDataUrl ESS.minus.bw
shortLabel ESS minus
longLabel Exonic Splicing Silencer minus strand
type bigWig
color 0,255,0
configurable on
maxHeightPixels 30:30:30
autoScale on
track ISE_minus
bigDataUrl ISE.minus.bw
shortLabel ISE minus
longLabel Intronic Splicing Enhancer minus strand
type bigWig
color 0,0,255
configurable on
maxHeightPixels 30:30:30
autoScale on
track ESE_plus
bigDataUrl ESE.plus.bw
shortLabel ESE plus
longLabel Exonic Splicing Enhancer plus strand
type bigWig
color 255,0,0
configurable on
maxHeightPixels 30:30:30
autoScale on
track ESS_plus
bigDataUrl ESS.plus.bw
shortLabel ESS plus
longLabel Exonic Splicing Silencer plus strand
type bigWig
color 0,255,0
configurable on
maxHeightPixels 30:30:30
autoScale on
track ISE_plus
bigDataUrl ISE.plus.bw
shortLabel ISE plus
longLabel Intronic Splicing Enhancer plus strand
type bigWig
color 0,0,255
configurable on
maxHeightPixels 30:30:30
autoScale on
###Splice Junction Coverage###
track TOTAL_SJ
bigDataUrl TOTAL_SJ.bb
shortLabel TOTAL High Confident Human Splice Junctions
longLabel TOTAL Human Canonical and Non Canonical Splice Junctions
type bigBed 12
itemRgb on
track 16_tissues_mixture
bigDataUrl 16_tissues_mixture.bb
shortLabel Mixture of 16 Human Tissues Splice Junctions
longLabel Illumina bodymap 2.0 - Mixture of 16 Human Tissues Splice Junction
type bigBed 12
itemRgb on
track GM12878
bigDataUrl GM12878.bb
shortLabel GM12878 Splice Junctions
longLabel ENCODE - GM12878 Splice Junctions
type bigBed 12
itemRgb on
track adipose
bigDataUrl adipose.bb
shortLabel Adipose Splice Junctions
longLabel Illumina bodymap 2.0 - Adipose Splice Junctions
type bigBed 12
itemRgb on
track adrenal
bigDataUrl adrenal.bb
shortLabel Adrenal Splice Junctions
longLabel Illumina bodymap 2.0 - Adrenal Splice Junctions
type bigBed 12
itemRgb on
track brain
bigDataUrl brain.bb
shortLabel Brain Splice Junctions
longLabel Illumina bodymap 2.0 - Brain Splice Junctions
type bigBed 12
itemRgb on
track breast
bigDataUrl breast.bb
shortLabel Breast Splice Junctions
longLabel Illumina bodymap 2.0 - Breast Splice Junctions
type bigBed 12
itemRgb on
track colon
bigDataUrl colon.bb
shortLabel Colon Splice Junctions
longLabel Illumina bodymap 2.0 - Colon Splice Junctions
type bigBed 12
itemRgb on
track heart
bigDataUrl heart.bb
shortLabel Heart Splice Junctions
longLabel Illumina bodymap 2.0 - Heart Splice Junctions
type bigBed 12
itemRgb on
track kidney
bigDataUrl kidney.bb
shortLabel Kidney Splice Junctions
longLabel Illumina bodymap 2.0 - Kidney Splice Junctions
type bigBed 12
itemRgb on
track liver
bigDataUrl liver.bb
shortLabel Liver Splice Junctions
longLabel Illumina bodymap 2.0 - Liver Splice Junctions
type bigBed 12
itemRgb on
track lung
bigDataUrl lung.bb
shortLabel Lung Splice Junctions
longLabel Illumina bodymap 2.0 - Lung Splice Junctions
type bigBed 12
itemRgb on
track lymph_node
bigDataUrl lymph_node.bb
shortLabel Lymph Node Splice Junctions
longLabel Illumina bodymap 2.0 - Lymph Node Splice Junctions
type bigBed 12
itemRgb on
track ovary
bigDataUrl ovary.bb
shortLabel Ovary Splice Junctions
longLabel Illumina bodymap 2.0 - Ovary Splice Junctions
type bigBed 12
itemRgb on
track prostate
bigDataUrl prostate.bb
shortLabel Prostate Splice Junctions
longLabel Illumina bodymap 2.0 - Prostate Splice Junctions
type bigBed 12
itemRgb on
track skeletal_muscle
bigDataUrl skeletal_muscle.bb
shortLabel Skeletal Muscle Splice Junctions
longLabel Illumina bodymap 2.0 - Skeletal Muscle Splice Junctions
type bigBed 12
itemRgb on
track testes
bigDataUrl testes.bb
shortLabel Testes Splice Junctions
longLabel Illumina bodymap 2.0 - Testes Splice Junctions
type bigBed 12
itemRgb on
track thyroid
bigDataUrl thyroid.bb
shortLabel Thyroid Splice Junctions
longLabel Illumina bodymap 2.0 - Thyroid Splice Junctions
type bigBed 12
itemRgb on
track white_blood_cells
bigDataUrl white_blood_cells.bb
shortLabel White Blood Cells Splice Junctions
longLabel Illumina bodymap 2.0 - White Blood Cells Splice Junctions
type bigBed 12
itemRgb on
#### Transcriptome Coverage ###
track polyA_RNA_ALL_alignments.minus
bigDataUrl polyA_RNA_ALL_alignments.minus.bw
shortLabel polyA+ RNA minus
longLabel Illumina Bodymap2.0 polyA+ RNA all alignments minus strand coverage
type bigWig
color 0,0,150
configurable on
maxHeightPixels 30:30:30
autoScale on
track polyA_RNA_ALL_alignments.plus
bigDataUrl polyA_RNA_ALL_alignments.plus.bw
shortLabel polyA+ RNA plus
longLabel Illumina Bodymap2.0 polyA+ RNA all alignments plus strand coverage
type bigWig
color 150,0,0
configurable on
maxHeightPixels 30:30:30
autoScale on
track TOTAL_RNA_ALL_alignments.minus
bigDataUrl TOTAL_RNA_ALL_alignments.minus.bw
shortLabel TOTAL RNA minus
longLabel Illumina Bodymap2.0 TOTAL RNA all alignments minus strand coverage
type bigWig
color 0,0,150
configurable on
maxHeightPixels 30:30:30
autoScale on
track TOTAL_RNA_ALL_alignments.plus
bigDataUrl TOTAL_RNA_ALL_alignments.plus.bw
shortLabel TOTAL RNA plus
longLabel Illumina Bodymap2.0 TOTAL RNA all alignments plus strand coverage
type bigWig
color 150,0,0
configurable on
maxHeightPixels 30:30:30
autoScale on
track polyA_RNA_ONLY_UNIQ_alignments.minus
bigDataUrl polyA_RNA_ONLY_UNIQ_alignments.minus.bw
shortLabel polyA+ RNA minus uniq
longLabel Illumina Bodymap2.0 polyA+ unique alignments minus strand coverage
type bigWig
color 0,0,150
configurable on
maxHeightPixels 30:30:30
autoScale on
track polyA_RNA_ONLY_UNIQ_alignments.plus
bigDataUrl polyA_RNA_ONLY_UNIQ_alignments.plus.bw
shortLabel polyA+ RNA plus uniq
longLabel Illumina Bodymap2.0 polyA+ RNA unique alignments plus strand coverage
type bigWig
color 150,0,0
configurable on
maxHeightPixels 30:30:30
autoScale on
track TOTAL_RNA_ONLY_UNIQ_alignments.minus
bigDataUrl TOTAL_RNA_ONLY_UNIQ_alignments.minus.bw
shortLabel TOTAL RNA minus uniq
longLabel Illumina Bodymap2.0 TOTAL RNA unique alignments minus strand coverage
type bigWig
color 0,0,150
configurable on
maxHeightPixels 30:30:30
autoScale on
track TOTAL_RNA_ONLY_UNIQ_alignments.plus
bigDataUrl TOTAL_RNA_ONLY_UNIQ_alignments.plus.bw
shortLabel TOTAL RNA plus uniq
longLabel Illumina Bodymap2.0 TOTAL RNA unique alignments plus strand coverage
type bigWig
color 150,0,0
configurable on
maxHeightPixels 30:30:30
autoScale on