rcromwell

Convenience Tools for Managing WDL Workflows via Cromwell

Cromwell is a scientific workflow engine designed for simplicity and scalability. It's maintained by the Broad Institute. (docs, code source).

rcromwell is maintained by the Fred Hutch Cancer Center Data Science Lab.

Installation

You can install the development version of rcromwell from GitHub with:

# install.packages("pak")
pak::pak("getwilds/rcromwell")

Documentation

Go to http://getwilds.org/rcromwell/ for rcromwell package documentation. Go to the Get Started vignette to get started, or reference page for the function documentation.

Bugs? Features?

Open an issue on our issue tracker.

Code of Conduct

Please note that the rcromwell project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

License

MIT

Prior art

• wdlRunR - archived package/repo