From 68f15c4d792e15ef002e9cd828788dd90a5cd889 Mon Sep 17 00:00:00 2001
From: Barret Schloerke <barret@rstudio.com>
Date: Mon, 21 Jun 2021 16:27:56 -0400
Subject: [PATCH] GGally 2.1.2 (#419)

---
 .github/workflows/R-CMD-check.yaml |   2 +-
 DESCRIPTION                        |   2 +-
 NEWS.md                            |   2 +-
 R/data-australia-pisa-2012.R       |   2 +-
 R/ggnetworkmap.R                   |   7 +-
 cran-comments.md                   |  30 +-
 man/australia_PISA2012.Rd          |   2 +-
 man/ggnetworkmap.Rd                |   7 +-
 revdep/README.md                   | 261 +++++-----
 revdep/cran.md                     |   5 +-
 revdep/problems.md                 | 801 +++++++++++++++++++++--------
 tests/testthat/test-ggnet.R        |  10 +-
 tests/testthat/test-ggnet2.R       |  10 +-
 tests/testthat/test-ggnetworkmap.R |   7 +-
 vignettes/ggnetworkmap.Rmd         |   2 +-
 15 files changed, 754 insertions(+), 396 deletions(-)

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
index 24efd288a..10a8164e4 100644
--- a/.github/workflows/R-CMD-check.yaml
+++ b/.github/workflows/R-CMD-check.yaml
@@ -19,7 +19,7 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - { os: macOS-latest,   r: 'devel',   force_suggests: "0" }
+          # - { os: macOS-latest,   r: 'devel',   force_suggests: "0" }
           # - { os: window-latest,   r: 'devel',   force_suggests: "1" }
 
           - { os: macOS-latest,   r: 'release', force_suggests: "1" }
diff --git a/DESCRIPTION b/DESCRIPTION
index a72604bc7..3405fbdd0 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: GGally
-Version: 2.1.1.9000
+Version: 2.1.2
 License: GPL (>= 2.0)
 Title: Extension to 'ggplot2'
 Type: Package
diff --git a/NEWS.md b/NEWS.md
index f9d42e324..7adce8c8e 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,4 +1,4 @@
-# GGally (development version)
+# GGally 2.1.2
 
 ### Bug fixes
 
diff --git a/R/data-australia-pisa-2012.R b/R/data-australia-pisa-2012.R
index 85a0e6b08..a7820c476 100644
--- a/R/data-australia-pisa-2012.R
+++ b/R/data-australia-pisa-2012.R
@@ -46,5 +46,5 @@
 #' @name australia_PISA2012
 #' @usage data(australia_PISA2012)
 #' @format A data frame with 8247 rows and 32 variables
-#' @source \url{http://www.oecd.org/pisa/pisaproducts/database-cbapisa2012.htm}
+#' @source \url{https://www.oecd.org/pisa/pisaproducts/database-cbapisa2012.htm}
 NULL
diff --git a/R/ggnetworkmap.R b/R/ggnetworkmap.R
index 51b619b7d..81f69eda5 100644
--- a/R/ggnetworkmap.R
+++ b/R/ggnetworkmap.R
@@ -56,17 +56,14 @@ if(getRversion() >= "2.15.1") {
 #' rownames(airports) <- airports$iata
 #'
 #' # select some random flights
-#' set.seed(1234)
+#' set.seed(123)
 #' flights <- data.frame(
 #'   origin = sample(airports[200:400, ]$iata, 200, replace = TRUE),
 #'   destination = sample(airports[200:400, ]$iata, 200, replace = TRUE)
 #' )
 #'
 #' # convert to network
-#' flights <- network(
-#'   flights[-114,], # remove loop
-#'   directed = TRUE
-#' )
+#' flights <- network(flights, directed = TRUE)
 #'
 #' # add geographic coordinates
 #' flights %v% "lat" <- airports[ network.vertex.names(flights), "lat" ]
diff --git a/cran-comments.md b/cran-comments.md
index a0db25934..12884599f 100644
--- a/cran-comments.md
+++ b/cran-comments.md
@@ -1,22 +1,20 @@
 
 ## Comments
-#### 2021-03-07
+#### 2021-06-20
 
-Have addressed the missing `emmeans` package error.
-
-Have also included other small bug fixes. No new features / functions.
+I have fixed the failing tests due to an update in `network` package. `GGally` now requires the latest version of the `network` package and should pass the tests.
 
 Thank you,
 Barret
 
-#### 2021-02-24
+#### 2021-06-08
 
 Dear maintainer,
 
 Please see the problems shown on
 <https://cran.r-project.org/web/checks/check_results_GGally.html>.
 
-Please correct before 2021-03-10 to safely retain your package on CRAN.
+Please correct before 2021-06-22 to safely retain your package on CRAN.
 
 Best,
 -k
@@ -25,15 +23,16 @@ Best,
 
 ## Test environments and R CMD check results
 
-* local macOS install 11.2.2
+* local macOS install 11.3.1
   * R 4.0
-* GitHub Actions - https://github.com/ggobi/ggally/pull/408/checks
-  * windows - R devel
-  * macOS, windows, ubuntu 16 - R release
-  * macOS, windows, ubuntu 16 - R oldrelease
+* GitHub Actions - https://github.com/ggobi/ggally/pull/419/checks
+  * macOS, windows, ubuntu {16,20} - R release
+  * macOS, windows, ubuntu {16,20} - R oldrelease
 
 * win-builder
   * devel
+  * release
+  * oldrelease
 
 #### R CMD check results
 
@@ -42,13 +41,16 @@ Best,
 
 ## revdepcheck results
 
-We checked 116 reverse dependencies (91 from CRAN + 25 from BioConductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 125 reverse dependencies (100 from CRAN + 25 from BioConductor), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
- * We failed to check 1 packages
+ * We failed to check 2 packages
 
 Issues with CRAN packages are summarised below.
 
-### Failed to install
+### Failed to check
 
+* egoTERGM    (NA)
+  * Package is archived. I believe this is a false positive
 * loon.ggplot (NA)
+  * Could not install `loon`. The changes made for this release should have a negative effect on their code.
diff --git a/man/australia_PISA2012.Rd b/man/australia_PISA2012.Rd
index b6ad5db9a..c95f8f5b0 100644
--- a/man/australia_PISA2012.Rd
+++ b/man/australia_PISA2012.Rd
@@ -8,7 +8,7 @@
 A data frame with 8247 rows and 32 variables
 }
 \source{
-\url{http://www.oecd.org/pisa/pisaproducts/database-cbapisa2012.htm}
+\url{https://www.oecd.org/pisa/pisaproducts/database-cbapisa2012.htm}
 }
 \usage{
 data(australia_PISA2012)
diff --git a/man/ggnetworkmap.Rd b/man/ggnetworkmap.Rd
index 733668e5e..4e2611e56 100644
--- a/man/ggnetworkmap.Rd
+++ b/man/ggnetworkmap.Rd
@@ -90,17 +90,14 @@ airports <- read.csv("http://datasets.flowingdata.com/tuts/maparcs/airports.csv"
 rownames(airports) <- airports$iata
 
 # select some random flights
-set.seed(1234)
+set.seed(123)
 flights <- data.frame(
   origin = sample(airports[200:400, ]$iata, 200, replace = TRUE),
   destination = sample(airports[200:400, ]$iata, 200, replace = TRUE)
 )
 
 # convert to network
-flights <- network(
-  flights[-114,], # remove loop
-  directed = TRUE
-)
+flights <- network(flights, directed = TRUE)
 
 # add geographic coordinates
 flights \%v\% "lat" <- airports[ network.vertex.names(flights), "lat" ]
diff --git a/revdep/README.md b/revdep/README.md
index 14d52c531..47fb67be1 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -10,140 +10,151 @@
 |collate  |en_US.UTF-8                  |
 |ctype    |en_US.UTF-8                  |
 |tz       |America/New_York             |
-|date     |2021-03-07                   |
+|date     |2021-06-20                   |
 
 # Dependencies
 
-|package |old   |new   |Δ  |
-|:-------|:-----|:-----|:--|
-|GGally  |2.1.0 |2.1.1 |*  |
+|package |old   |new        |Δ  |
+|:-------|:-----|:----------|:--|
+|GGally  |2.1.1 |2.1.2      |*  |
+|cpp11   |NA    |0.2.7.9000 |*  |
 
 # Revdeps
 
-## Failed to check (1)
+## Failed to check (2)
 
 |package                               |version |error |warning |note |
 |:-------------------------------------|:-------|:-----|:-------|:----|
-|[loon.ggplot](failures.md#loonggplot) |1.0.1   |1     |        |     |
+|[egoTERGM](failures.md#egotergm)      |2.1.1   |1     |        |     |
+|[loon.ggplot](failures.md#loonggplot) |1.2.1   |1     |        |     |
 
-## All (116)
+## All (125)
 
-|package                                                          |version  |error |warning |note |
-|:----------------------------------------------------------------|:--------|:-----|:-------|:----|
-|[adventr](problems.md#adventr)                                   |0.1.8    |      |        |2    |
-|airGR                                                            |1.6.10.4 |      |        |     |
-|[AirSensor](problems.md#airsensor)                               |1.0.2    |      |        |1    |
-|[alevinQC](problems.md#alevinqc)                                 |1.6.1    |      |        |1    |
-|AlleleShift                                                      |0.9-2    |      |        |     |
-|[ALPS](problems.md#alps)                                         |1.4.0    |      |        |1    |
-|[AlpsNMR](problems.md#alpsnmr)                                   |3.0.5    |      |1       |1    |
-|BAS                                                              |1.5.5    |      |        |     |
-|[BasketballAnalyzeR](problems.md#basketballanalyzer)             |0.5.0    |      |        |1    |
-|[bayestestR](problems.md#bayestestr)                             |0.8.2    |      |        |1    |
-|[BGGM](problems.md#bggm)                                         |2.0.3    |      |        |1    |
-|[bigPint](problems.md#bigpint)                                   |1.6.0    |      |        |1    |
-|[bootcluster](problems.md#bootcluster)                           |0.2.0    |      |1       |     |
-|brinton                                                          |0.2.4    |      |        |     |
-|CARBayes                                                         |5.2.3    |      |        |     |
-|CARBayesST                                                       |3.1.1    |      |        |     |
-|[CeTF](problems.md#cetf)                                         |1.2.4    |      |        |1    |
-|[CINNA](problems.md#cinna)                                       |1.1.54   |      |        |1    |
-|[CluMSID](problems.md#clumsid)                                   |1.6.0    |      |        |1    |
-|clustrd                                                          |1.3.7-2  |      |        |     |
-|[communication](problems.md#communication)                       |0.1      |      |        |1    |
-|DescribeDisplay                                                  |0.2.7    |      |        |     |
-|[discourseGT](problems.md#discoursegt)                           |1.1.4    |      |        |1    |
-|eechidna                                                         |1.4.1    |      |        |     |
-|EGAnet                                                           |0.9.8    |      |        |     |
-|[egoTERGM](problems.md#egotergm)                                 |2.1.1    |      |        |1    |
-|EMMIXmfa                                                         |2.0.11   |      |        |     |
-|ezEDA                                                            |0.1.0    |      |        |     |
-|[fic](problems.md#fic)                                           |1.0.0    |      |        |1    |
-|finalfit                                                         |1.0.2    |      |        |     |
-|[fingerPro](problems.md#fingerpro)                               |1.1      |      |        |1    |
-|fpp2                                                             |2.4      |      |        |     |
-|freqparcoord                                                     |1.0.1    |      |        |     |
-|[GENESIS](problems.md#genesis)                                   |2.20.1   |      |        |3    |
-|gfilmm                                                           |2.0.2    |      |        |     |
-|[ggbio](problems.md#ggbio)                                       |1.38.0   |      |1       |2    |
-|ggmcmc                                                           |1.5.1.1  |      |        |     |
-|[GGPA](problems.md#ggpa)                                         |1.2.0    |      |        |2    |
-|[ggPMX](problems.md#ggpmx)                                       |1.1.2    |      |        |1    |
-|[ggquickeda](problems.md#ggquickeda)                             |0.2.0    |      |        |1    |
-|glancedata                                                       |1.0.1    |      |        |     |
-|growthPheno                                                      |1.0-30   |      |        |     |
-|gsynth                                                           |1.0.9    |      |        |     |
-|HierDpart                                                        |0.5.0    |      |        |     |
-|[httk](problems.md#httk)                                         |2.0.3    |      |        |1    |
-|ICtest                                                           |0.3-3    |      |        |     |
-|imageData                                                        |0.1-61   |      |        |     |
-|[isomiRs](problems.md#isomirs)                                   |1.18.1   |      |1       |2    |
-|ITNr                                                             |0.6.0    |      |        |     |
-|[jmv](problems.md#jmv)                                           |1.2.23   |      |        |1    |
-|[jsmodule](problems.md#jsmodule)                                 |1.1.6    |      |        |1    |
-|[LANDD](problems.md#landd)                                       |1.1.0    |      |        |1    |
-|[loon.ggplot](failures.md#loonggplot)                            |1.0.1    |1     |        |     |
-|[MAINT.Data](problems.md#maintdata)                              |2.5.0    |      |        |1    |
-|[MAST](problems.md#mast)                                         |1.16.0   |      |1       |2    |
-|[MCbiclust](problems.md#mcbiclust)                               |1.14.0   |      |        |1    |
-|metan                                                            |1.12.0   |      |        |     |
-|[mgcViz](problems.md#mgcviz)                                     |0.1.6    |      |        |1    |
-|[MissingDataGUI](problems.md#missingdatagui)                     |0.2-5    |      |4       |4    |
-|mitch                                                            |1.2.2    |      |        |     |
-|miWQS                                                            |0.4.2    |      |        |     |
-|mlergm                                                           |0.7      |      |        |     |
-|mlr3viz                                                          |0.5.1    |      |        |     |
-|mlrMBO                                                           |1.1.5    |      |        |     |
-|[MOFA](problems.md#mofa)                                         |1.6.2    |1     |1       |5    |
-|[MOFA2](problems.md#mofa2)                                       |1.0.1    |      |        |7    |
-|MRPC                                                             |2.2.2    |      |        |     |
-|[nanny](problems.md#nanny)                                       |0.1.8    |      |        |1    |
-|[NetworkChange](problems.md#networkchange)                       |0.7      |      |        |1    |
-|[nzelect](problems.md#nzelect)                                   |0.4.0    |      |        |2    |
-|[ORFik](problems.md#orfik)                                       |1.10.11  |      |1       |3    |
-|OutliersO3                                                       |0.6.3    |      |        |     |
-|[PAFway](problems.md#pafway)                                     |0.1.3    |      |        |1    |
-|ParamHelpers                                                     |1.14     |      |        |     |
-|[PAsso](problems.md#passo)                                       |0.1.8    |      |        |2    |
-|PhosR                                                            |1.0.0    |      |        |     |
-|[Pi](problems.md#pi)                                             |2.2.1    |      |1       |     |
-|[plotly](problems.md#plotly)                                     |4.9.3    |      |        |1    |
-|[PopGenReport](problems.md#popgenreport)                         |3.0.4    |      |        |1    |
-|PPforest                                                         |0.1.1    |      |        |     |
-|[pubh](problems.md#pubh)                                         |1.1.20   |      |        |1    |
-|qualvar                                                          |0.2.0    |      |        |     |
-|QuantNorm                                                        |1.0.5    |      |        |     |
-|randomForestExplainer                                            |0.10.1   |      |        |     |
-|RHMS                                                             |1.6      |      |        |     |
-|[robCompositions](problems.md#robcompositions)                   |2.3.0    |      |        |1    |
-|[robustbase](problems.md#robustbase)                             |0.93-7   |      |        |2    |
-|robustSingleCell                                                 |0.1.1    |      |        |     |
-|[rrr](problems.md#rrr)                                           |1.0.0    |      |        |1    |
-|rwty                                                             |1.0.2    |      |        |     |
-|[scPipe](problems.md#scpipe)                                     |1.12.0   |      |1       |4    |
-|[seer](problems.md#seer)                                         |1.1.5    |      |        |1    |
-|[SeqSQC](problems.md#seqsqc)                                     |1.12.0   |1     |1       |1    |
-|SHELF                                                            |1.7.0    |      |        |     |
-|SimBIID                                                          |0.2.1    |      |        |     |
-|simplexdesign                                                    |0.1.0    |      |        |     |
-|[SmartEDA](problems.md#smarteda)                                 |0.3.6    |      |        |1    |
-|[specmine](problems.md#specmine)                                 |3.1.4    |      |        |3    |
-|[spinifex](problems.md#spinifex)                                 |0.2.7    |1     |        |1    |
-|[spup](problems.md#spup)                                         |1.3-2    |      |        |1    |
-|staRdom                                                          |1.1.18   |      |        |     |
-|[statVisual](problems.md#statvisual)                             |1.2.1    |      |1       |1    |
-|[tidybulk](problems.md#tidybulk)                                 |1.2.0    |      |1       |3    |
-|tidyseurat                                                       |0.1.17   |      |        |     |
-|[tidySingleCellExperiment](problems.md#tidysinglecellexperiment) |1.0.0    |      |1       |2    |
-|[TNBC.CMS](problems.md#tnbccms)                                  |1.6.0    |      |1       |     |
-|tsfeatures                                                       |1.0.2    |      |        |     |
-|[TVTB](problems.md#tvtb)                                         |1.16.0   |      |        |1    |
-|[ubiquity](problems.md#ubiquity)                                 |1.0.3    |      |        |1    |
-|ufs                                                              |0.4.3    |      |        |     |
-|userfriendlyscience                                              |0.7.2    |      |        |     |
-|ushr                                                             |0.2.3    |      |        |     |
-|[vidger](problems.md#vidger)                                     |1.10.0   |      |        |1    |
-|vortexR                                                          |1.1.7    |      |        |     |
-|WRS2                                                             |1.1-1    |      |        |     |
-|WRSS                                                             |3.0      |      |        |     |
+|package                                                          |version |error |warning |note |
+|:----------------------------------------------------------------|:-------|:-----|:-------|:----|
+|[adventr](problems.md#adventr)                                   |0.1.8   |      |        |2    |
+|airGR                                                            |1.6.12  |      |        |     |
+|[AirSensor](problems.md#airsensor)                               |1.0.8   |      |        |2    |
+|[alevinQC](problems.md#alevinqc)                                 |1.6.1   |      |        |1    |
+|AlleleShift                                                      |1.0-1   |      |        |     |
+|[ALPS](problems.md#alps)                                         |1.4.0   |      |        |1    |
+|[AlpsNMR](problems.md#alpsnmr)                                   |3.0.6   |2     |1       |1    |
+|BAS                                                              |1.5.5   |      |        |     |
+|[BasketballAnalyzeR](problems.md#basketballanalyzer)             |0.5.0   |      |        |1    |
+|bayestestR                                                       |0.10.0  |      |        |     |
+|[BGGM](problems.md#bggm)                                         |2.0.3   |      |        |1    |
+|[bigPint](problems.md#bigpint)                                   |1.6.0   |      |        |1    |
+|[bootcluster](problems.md#bootcluster)                           |0.2.5   |      |        |1    |
+|brinton                                                          |0.2.5   |      |        |     |
+|bruceR                                                           |0.7.0   |      |        |     |
+|CARBayes                                                         |5.2.4   |      |        |     |
+|CARBayesST                                                       |3.2.1   |      |        |     |
+|[CeTF](problems.md#cetf)                                         |1.2.4   |      |        |1    |
+|[CINNA](problems.md#cinna)                                       |1.1.54  |      |        |1    |
+|[CluMSID](problems.md#clumsid)                                   |1.6.0   |      |        |1    |
+|clustrd                                                          |1.3.7-2 |      |        |     |
+|[communication](problems.md#communication)                       |0.1     |      |        |1    |
+|[comparer](problems.md#comparer)                                 |0.2.2   |      |        |1    |
+|DescribeDisplay                                                  |0.2.7   |      |        |     |
+|[discourseGT](problems.md#discoursegt)                           |1.1.6   |      |        |1    |
+|eechidna                                                         |1.4.1   |      |        |     |
+|EGAnet                                                           |0.9.8   |      |        |     |
+|[egoTERGM](failures.md#egotergm)                                 |2.1.1   |1     |        |     |
+|EMMIXmfa                                                         |2.0.11  |      |        |     |
+|[ezEDA](problems.md#ezeda)                                       |0.1.0   |1     |        |     |
+|[fic](problems.md#fic)                                           |1.0.0   |      |        |1    |
+|finalfit                                                         |1.0.3   |      |        |     |
+|[fingerPro](problems.md#fingerpro)                               |1.1     |      |        |1    |
+|fpp2                                                             |2.4     |      |        |     |
+|freqparcoord                                                     |1.0.1   |      |        |     |
+|[GDAtools](problems.md#gdatools)                                 |1.7     |      |        |1    |
+|[GENESIS](problems.md#genesis)                                   |2.20.1  |      |        |3    |
+|gfilmm                                                           |2.0.3   |      |        |     |
+|[ggbio](problems.md#ggbio)                                       |1.38.0  |      |1       |2    |
+|ggmcmc                                                           |1.5.1.1 |      |        |     |
+|[GGMnonreg](problems.md#ggmnonreg)                               |1.0.0   |      |        |1    |
+|[GGPA](problems.md#ggpa)                                         |1.2.0   |      |        |2    |
+|[ggPMX](problems.md#ggpmx)                                       |1.2.3   |      |        |1    |
+|[ggquickeda](problems.md#ggquickeda)                             |0.2.0   |      |        |1    |
+|glancedata                                                       |1.0.1   |      |        |     |
+|[greed](problems.md#greed)                                       |0.5.1   |      |        |1    |
+|growthPheno                                                      |1.0-30  |      |        |     |
+|gsynth                                                           |1.0.9   |      |        |     |
+|gtsummary                                                        |1.4.1   |      |        |     |
+|HierDpart                                                        |1.5.0   |      |        |     |
+|[httk](problems.md#httk)                                         |2.0.4   |      |        |1    |
+|ICtest                                                           |0.3-4   |      |        |     |
+|imageData                                                        |0.1-61  |      |        |     |
+|[isomiRs](problems.md#isomirs)                                   |1.18.1  |      |1       |2    |
+|ITNr                                                             |0.6.0   |      |        |     |
+|[jmv](problems.md#jmv)                                           |1.2.23  |      |        |1    |
+|[jsmodule](problems.md#jsmodule)                                 |1.1.7   |      |        |1    |
+|[LANDD](problems.md#landd)                                       |1.1.0   |      |        |1    |
+|[loon.ggplot](failures.md#loonggplot)                            |1.2.1   |1     |        |     |
+|[MAINT.Data](problems.md#maintdata)                              |2.6.1   |      |        |1    |
+|[MAST](problems.md#mast)                                         |1.16.0  |      |1       |2    |
+|[MCbiclust](problems.md#mcbiclust)                               |1.14.0  |      |        |1    |
+|metan                                                            |1.14.0  |      |        |     |
+|[mgcViz](problems.md#mgcviz)                                     |0.1.6   |      |        |1    |
+|[MissingDataGUI](problems.md#missingdatagui)                     |0.2-5   |      |4       |4    |
+|mitch                                                            |1.2.2   |      |        |     |
+|miWQS                                                            |0.4.4   |      |        |     |
+|mlergm                                                           |0.7     |      |        |     |
+|mlr3viz                                                          |0.5.3   |      |        |     |
+|mlrMBO                                                           |1.1.5   |      |        |     |
+|[MOFA](problems.md#mofa)                                         |1.6.2   |1     |1       |5    |
+|[MOFA2](problems.md#mofa2)                                       |1.0.1   |1     |        |7    |
+|MRPC                                                             |2.3.1   |      |        |     |
+|[nanny](problems.md#nanny)                                       |0.1.8   |      |        |1    |
+|[NetworkChange](problems.md#networkchange)                       |0.7     |      |        |1    |
+|[nzelect](problems.md#nzelect)                                   |0.4.0   |      |        |2    |
+|[ORFik](problems.md#orfik)                                       |1.10.13 |      |1       |3    |
+|OutliersO3                                                       |0.6.3   |      |        |     |
+|[PAFway](problems.md#pafway)                                     |0.1.3   |      |        |1    |
+|ParamHelpers                                                     |1.14    |      |        |     |
+|PAsso                                                            |0.1.10  |      |        |     |
+|PhosR                                                            |1.0.0   |      |        |     |
+|[Pi](problems.md#pi)                                             |2.2.1   |      |1       |     |
+|[plotly](problems.md#plotly)                                     |4.9.4.1 |      |        |1    |
+|[PopGenReport](problems.md#popgenreport)                         |3.0.4   |      |        |1    |
+|PPforest                                                         |0.1.1   |      |        |     |
+|[pubh](problems.md#pubh)                                         |1.1.20  |      |        |1    |
+|qualvar                                                          |0.2.0   |      |        |     |
+|QuantNorm                                                        |1.0.5   |      |        |     |
+|[randomForestExplainer](problems.md#randomforestexplainer)       |0.10.1  |2     |        |     |
+|RHMS                                                             |1.6     |      |        |     |
+|[robCompositions](problems.md#robcompositions)                   |2.3.0   |      |-1      |1    |
+|[robustbase](problems.md#robustbase)                             |0.93-8  |      |        |2    |
+|robustSingleCell                                                 |0.1.1   |      |        |     |
+|[rosetta](problems.md#rosetta)                                   |0.3.6   |      |        |1    |
+|[rrr](problems.md#rrr)                                           |1.0.0   |      |        |1    |
+|rwty                                                             |1.0.2   |      |        |     |
+|[scPipe](problems.md#scpipe)                                     |1.12.0  |      |1       |4    |
+|[seer](problems.md#seer)                                         |1.1.6   |      |        |1    |
+|[SeqSQC](problems.md#seqsqc)                                     |1.12.0  |1     |1       |1    |
+|SHELF                                                            |1.8.0   |      |        |     |
+|SimBIID                                                          |0.2.1   |      |        |     |
+|simplexdesign                                                    |0.1.0   |      |        |     |
+|[SmartEDA](problems.md#smarteda)                                 |0.3.8   |      |        |2    |
+|[specmine](problems.md#specmine)                                 |3.1.5   |      |        |3    |
+|[spinifex](problems.md#spinifex)                                 |0.2.8   |1     |        |     |
+|[spup](problems.md#spup)                                         |1.3-2   |      |        |1    |
+|staRdom                                                          |1.1.21  |      |        |     |
+|[statVisual](problems.md#statvisual)                             |1.2.1   |      |1       |1    |
+|[tidybulk](problems.md#tidybulk)                                 |1.2.1   |      |1       |3    |
+|tidyseurat                                                       |0.2.0   |      |        |     |
+|[tidySingleCellExperiment](problems.md#tidysinglecellexperiment) |1.0.0   |      |1       |2    |
+|[TNBC.CMS](problems.md#tnbccms)                                  |1.6.0   |      |1       |     |
+|tsfeatures                                                       |1.0.2   |      |        |     |
+|[TVTB](problems.md#tvtb)                                         |1.16.0  |      |        |1    |
+|[ubiquity](problems.md#ubiquity)                                 |1.0.5   |      |        |1    |
+|[ufs](problems.md#ufs)                                           |0.4.3   |1     |        |     |
+|userfriendlyscience                                              |0.7.2   |      |        |     |
+|ushr                                                             |0.2.3   |      |        |     |
+|[vidger](problems.md#vidger)                                     |1.10.0  |      |        |1    |
+|[vivid](problems.md#vivid)                                       |0.1.0   |      |        |1    |
+|vortexR                                                          |1.1.7   |      |        |     |
+|wildlifeDI                                                       |0.4.1   |      |        |     |
+|WRS2                                                             |1.1-1   |      |        |     |
+|WRSS                                                             |3.0     |      |        |     |
 
diff --git a/revdep/cran.md b/revdep/cran.md
index c6acbaeb4..51908973e 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,12 +1,13 @@
 ## revdepcheck results
 
-We checked 116 reverse dependencies (91 from CRAN + 25 from BioConductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 125 reverse dependencies (100 from CRAN + 25 from BioConductor), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
- * We failed to check 1 packages
+ * We failed to check 2 packages
 
 Issues with CRAN packages are summarised below.
 
 ### Failed to check
 
+* egoTERGM    (NA)
 * loon.ggplot (NA)
diff --git a/revdep/problems.md b/revdep/problems.md
index 0315777d0..ef9a85105 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -6,7 +6,7 @@
 * GitHub: NA
 * Source code: https://github.com/cran/adventr
 * Date/Publication: 2020-05-05 16:50:06 UTC
-* Number of recursive dependencies: 162
+* Number of recursive dependencies: 160
 
 Run `revdep_details(, "adventr")` for more info
 
@@ -34,11 +34,11 @@ Run `revdep_details(, "adventr")` for more info
 
 <details>
 
-* Version: 1.0.2
+* Version: 1.0.8
 * GitHub: https://github.com/MazamaScience/AirSensor
 * Source code: https://github.com/cran/AirSensor
-* Date/Publication: 2020-10-08 12:10:02 UTC
-* Number of recursive dependencies: 186
+* Date/Publication: 2021-03-12 21:40:09 UTC
+* Number of recursive dependencies: 183
 
 Run `revdep_details(, "AirSensor")` for more info
 
@@ -46,6 +46,13 @@ Run `revdep_details(, "AirSensor")` for more info
 
 ## In both
 
+*   checking installed package size ... NOTE
+    ```
+      installed size is  5.4Mb
+      sub-directories of 1Mb or more:
+        data   4.7Mb
+    ```
+
 *   checking data for non-ASCII characters ... NOTE
     ```
       Note: found 90 marked UTF-8 strings
@@ -59,7 +66,7 @@ Run `revdep_details(, "AirSensor")` for more info
 * GitHub: https://github.com/csoneson/alevinQC
 * Source code: https://github.com/cran/alevinQC
 * Date/Publication: 2021-02-02
-* Number of recursive dependencies: 100
+* Number of recursive dependencies: 97
 
 Run `revdep_details(, "alevinQC")` for more info
 
@@ -82,7 +89,7 @@ Run `revdep_details(, "alevinQC")` for more info
 * GitHub: https://github.com/itsvenu/ALPS
 * Source code: https://github.com/cran/ALPS
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 197
+* Number of recursive dependencies: 196
 
 Run `revdep_details(, "ALPS")` for more info
 
@@ -102,11 +109,11 @@ Run `revdep_details(, "ALPS")` for more info
 
 <details>
 
-* Version: 3.0.5
+* Version: 3.0.6
 * GitHub: NA
 * Source code: https://github.com/cran/AlpsNMR
-* Date/Publication: 2021-01-20
-* Number of recursive dependencies: 163
+* Date/Publication: 2021-03-31
+* Number of recursive dependencies: 162
 
 Run `revdep_details(, "AlpsNMR")` for more info
 
@@ -114,6 +121,54 @@ Run `revdep_details(, "AlpsNMR")` for more info
 
 ## In both
 
+*   checking examples ... ERROR
+    ```
+    ...
+    > model <- nmr_pca_build_model(dataset_1D)
+    > nmr_pca_plot_variance(model)
+    > 
+    > dir_to_demo_dataset <- system.file("dataset-demo", package = "AlpsNMR")
+    > dataset <- nmr_read_samples_dir(dir_to_demo_dataset)
+    > dataset_1D <- nmr_interpolate_1D(dataset, axis = c(min = -0.5, max = 10, by = 2.3E-4))
+    > model <- nmr_pca_build_model(dataset_1D)
+    > nmr_pca_scoreplot(dataset_1D, model)
+    Error: Join columns must be present in data.
+    ✖ Problem with `NMRExperiment`.
+    Backtrace:
+        █
+     1. ├─AlpsNMR::nmr_pca_scoreplot(dataset_1D, model)
+     2. │ └─`%>%`(...)
+     3. ├─dplyr::left_join(., nmr_metadata, by = "NMRExperiment")
+     4. └─dplyr:::left_join.data.frame(., nmr_metadata, by = "NMRExperiment")
+     5.   └─dplyr:::join_mutate(...)
+     6.     └─dplyr:::join_cols(...)
+     7.       └─dplyr:::standardise_join_by(by, x_names = x_names, y_names = y_names)
+     8.         └─dplyr:::check_join_vars(by$x, x_names)
+    Execution halted
+    ```
+
+*   checking tests ...
+    ```
+     ERROR
+    Running the tests in ‘tests/testthat.R’ failed.
+    Last 13 lines of output:
+      ✖ Problem with `NMRExperiment`.
+      Backtrace:
+          █
+       1. ├─AlpsNMR::nmr_pca_scoreplot(dataset, pca_built) test-outliers.R:12:2
+       2. │ └─`%>%`(...)
+       3. ├─dplyr::left_join(., nmr_metadata, by = "NMRExperiment")
+       4. └─dplyr:::left_join.data.frame(., nmr_metadata, by = "NMRExperiment")
+       5.   └─dplyr:::join_mutate(...)
+       6.     └─dplyr:::join_cols(...)
+       7.       └─dplyr:::standardise_join_by(by, x_names = x_names, y_names = y_names)
+       8.         └─dplyr:::check_join_vars(by$x, x_names)
+      
+      [ FAIL 1 | WARN 2 | SKIP 1 | PASS 73 ]
+      Error: Test failures
+      Execution halted
+    ```
+
 *   checking Rd \usage sections ... WARNING
     ```
     ...
@@ -154,7 +209,7 @@ Run `revdep_details(, "AlpsNMR")` for more info
 * GitHub: https://github.com/sndmrc/BasketballAnalyzeR
 * Source code: https://github.com/cran/BasketballAnalyzeR
 * Date/Publication: 2020-06-26 09:00:11 UTC
-* Number of recursive dependencies: 76
+* Number of recursive dependencies: 74
 
 Run `revdep_details(, "BasketballAnalyzeR")` for more info
 
@@ -169,30 +224,6 @@ Run `revdep_details(, "BasketballAnalyzeR")` for more info
       All declared Imports should be used.
     ```
 
-# bayestestR
-
-<details>
-
-* Version: 0.8.2
-* GitHub: https://github.com/easystats/bayestestR
-* Source code: https://github.com/cran/bayestestR
-* Date/Publication: 2021-01-26 17:40:03 UTC
-* Number of recursive dependencies: 209
-
-Run `revdep_details(, "bayestestR")` for more info
-
-</details>
-
-## In both
-
-*   checking installed package size ... NOTE
-    ```
-      installed size is  9.1Mb
-      sub-directories of 1Mb or more:
-        doc    7.2Mb
-        help   1.3Mb
-    ```
-
 # BGGM
 
 <details>
@@ -201,7 +232,7 @@ Run `revdep_details(, "bayestestR")` for more info
 * GitHub: https://github.com/donaldRwilliams/BGGM
 * Source code: https://github.com/cran/BGGM
 * Date/Publication: 2020-12-03 08:20:06 UTC
-* Number of recursive dependencies: 167
+* Number of recursive dependencies: 165
 
 Run `revdep_details(, "BGGM")` for more info
 
@@ -225,7 +256,7 @@ Run `revdep_details(, "BGGM")` for more info
 * GitHub: https://github.com/lindsayrutter/bigPint
 * Source code: https://github.com/cran/bigPint
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 166
+* Number of recursive dependencies: 162
 
 Run `revdep_details(, "bigPint")` for more info
 
@@ -235,7 +266,7 @@ Run `revdep_details(, "bigPint")` for more info
 
 *   checking installed package size ... NOTE
     ```
-      installed size is  7.8Mb
+      installed size is  7.7Mb
       sub-directories of 1Mb or more:
         data             2.1Mb
         doc              2.3Mb
@@ -246,11 +277,11 @@ Run `revdep_details(, "bigPint")` for more info
 
 <details>
 
-* Version: 0.2.0
+* Version: 0.2.5
 * GitHub: NA
 * Source code: https://github.com/cran/bootcluster
-* Date/Publication: 2020-10-20 14:50:06 UTC
-* Number of recursive dependencies: 68
+* Date/Publication: 2021-06-10 08:20:04 UTC
+* Number of recursive dependencies: 69
 
 Run `revdep_details(, "bootcluster")` for more info
 
@@ -258,11 +289,10 @@ Run `revdep_details(, "bootcluster")` for more info
 
 ## In both
 
-*   checking whether package ‘bootcluster’ can be installed ... WARNING
+*   checking dependencies in R code ... NOTE
     ```
-    Found the following significant warnings:
-      Warning: replacing previous import ‘GGally::%>%’ by ‘sets::%>%’ when loading ‘bootcluster’
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/bootcluster/new/bootcluster.Rcheck/00install.out’ for details.
+    Namespace in Imports field not imported from: ‘sna’
+      All declared Imports should be used.
     ```
 
 # CeTF
@@ -273,7 +303,7 @@ Run `revdep_details(, "bootcluster")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/CeTF
 * Date/Publication: 2020-11-23
-* Number of recursive dependencies: 229
+* Number of recursive dependencies: 225
 
 Run `revdep_details(, "CeTF")` for more info
 
@@ -283,7 +313,7 @@ Run `revdep_details(, "CeTF")` for more info
 
 *   checking installed package size ... NOTE
     ```
-      installed size is  5.3Mb
+      installed size is  5.2Mb
       sub-directories of 1Mb or more:
         data   1.6Mb
         doc    2.5Mb
@@ -297,7 +327,7 @@ Run `revdep_details(, "CeTF")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/CINNA
 * Date/Publication: 2021-01-28 15:00:02 UTC
-* Number of recursive dependencies: 138
+* Number of recursive dependencies: 135
 
 Run `revdep_details(, "CINNA")` for more info
 
@@ -319,7 +349,7 @@ Run `revdep_details(, "CINNA")` for more info
 * GitHub: https://github.com/tdepke/CluMSID
 * Source code: https://github.com/cran/CluMSID
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 170
+* Number of recursive dependencies: 167
 
 Run `revdep_details(, "CluMSID")` for more info
 
@@ -342,7 +372,7 @@ Run `revdep_details(, "CluMSID")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/communication
 * Date/Publication: 2021-02-25 09:20:02 UTC
-* Number of recursive dependencies: 89
+* Number of recursive dependencies: 88
 
 Run `revdep_details(, "communication")` for more info
 
@@ -358,15 +388,37 @@ Run `revdep_details(, "communication")` for more info
       All declared Imports should be used.
     ```
 
+# comparer
+
+<details>
+
+* Version: 0.2.2
+* GitHub: https://github.com/CollinErickson/comparer
+* Source code: https://github.com/cran/comparer
+* Date/Publication: 2021-03-29 09:10:09 UTC
+* Number of recursive dependencies: 93
+
+Run `revdep_details(, "comparer")` for more info
+
+</details>
+
+## In both
+
+*   checking dependencies in R code ... NOTE
+    ```
+    Namespace in Imports field not imported from: ‘R6’
+      All declared Imports should be used.
+    ```
+
 # discourseGT
 
 <details>
 
-* Version: 1.1.4
+* Version: 1.1.6
 * GitHub: NA
 * Source code: https://github.com/cran/discourseGT
-* Date/Publication: 2021-02-17 07:20:02 UTC
-* Number of recursive dependencies: 106
+* Date/Publication: 2021-06-18 21:50:05 UTC
+* Number of recursive dependencies: 103
 
 Run `revdep_details(, "discourseGT")` for more info
 
@@ -377,7 +429,7 @@ Run `revdep_details(, "discourseGT")` for more info
 *   checking dependencies in R code ... NOTE
     ```
     Namespaces in Imports field not imported from:
-      ‘BiocManager’ ‘sna’
+      ‘BiocManager’ ‘ggpubr’ ‘sna’
       All declared Imports should be used.
     ```
 
@@ -389,7 +441,7 @@ Run `revdep_details(, "discourseGT")` for more info
 * GitHub: https://github.com/benjamin-w-campbell/egoTERGM
 * Source code: https://github.com/cran/egoTERGM
 * Date/Publication: 2019-05-17 13:20:03 UTC
-* Number of recursive dependencies: 82
+* Number of recursive dependencies: 85
 
 Run `revdep_details(, "egoTERGM")` for more info
 
@@ -397,9 +449,88 @@ Run `revdep_details(, "egoTERGM")` for more info
 
 ## In both
 
-*   checking dependencies in R code ... NOTE
+*   checking whether package ‘egoTERGM’ can be installed ... ERROR
     ```
-    Missing or unexported object: ‘ergm::ergm.getmodel’
+    Installation failed.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/egoTERGM/new/egoTERGM.Rcheck/00install.out’ for details.
+    ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘egoTERGM’ ...
+** package ‘egoTERGM’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** data
+*** moving datasets to lazyload DB
+** inst
+** byte-compile and prepare package for lazy loading
+Error: package or namespace load failed for ‘btergm’:
+ object ‘ergm.Cprepare’ is not exported by 'namespace:ergm'
+Error: package ‘btergm’ could not be loaded
+Execution halted
+ERROR: lazy loading failed for package ‘egoTERGM’
+* removing ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/egoTERGM/new/egoTERGM.Rcheck/egoTERGM’
+
+```
+### CRAN
+
+```
+* installing *source* package ‘egoTERGM’ ...
+** package ‘egoTERGM’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** data
+*** moving datasets to lazyload DB
+** inst
+** byte-compile and prepare package for lazy loading
+Error: package or namespace load failed for ‘btergm’:
+ object ‘ergm.Cprepare’ is not exported by 'namespace:ergm'
+Error: package ‘btergm’ could not be loaded
+Execution halted
+ERROR: lazy loading failed for package ‘egoTERGM’
+* removing ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/egoTERGM/old/egoTERGM.Rcheck/egoTERGM’
+
+```
+# ezEDA
+
+<details>
+
+* Version: 0.1.0
+* GitHub: https://github.com/kviswana/ezEDA
+* Source code: https://github.com/cran/ezEDA
+* Date/Publication: 2020-06-25 09:20:06 UTC
+* Number of recursive dependencies: 72
+
+Run `revdep_details(, "ezEDA")` for more info
+
+</details>
+
+## In both
+
+*   checking tests ...
+    ```
+     ERROR
+    Running the tests in ‘tests/testthat.R’ failed.
+    Last 13 lines of output:
+      p$labels$y not identical to "count".
+      Attributes: < Modes: list, NULL >
+      Attributes: < Lengths: 1, 0 >
+      Attributes: < names for target but not for current >
+      Attributes: < current is not list-like >
+      ── Failure (test_two_category_tally.R:19:3): y axis is labeled 'count' ─────────
+      p$labels$y not identical to "count".
+      Attributes: < Modes: list, NULL >
+      Attributes: < Lengths: 1, 0 >
+      Attributes: < names for target but not for current >
+      Attributes: < current is not list-like >
+      
+      [ FAIL 8 | WARN 1 | SKIP 0 | PASS 79 ]
+      Error: Test failures
+      Execution halted
     ```
 
 # fic
@@ -410,7 +541,7 @@ Run `revdep_details(, "egoTERGM")` for more info
 * GitHub: https://github.com/chjackson/fic
 * Source code: https://github.com/cran/fic
 * Date/Publication: 2019-04-13 08:32:39 UTC
-* Number of recursive dependencies: 104
+* Number of recursive dependencies: 103
 
 Run `revdep_details(, "fic")` for more info
 
@@ -446,6 +577,29 @@ Run `revdep_details(, "fingerPro")` for more info
       All declared Imports should be used.
     ```
 
+# GDAtools
+
+<details>
+
+* Version: 1.7
+* GitHub: https://github.com/nicolas-robette/GDAtools
+* Source code: https://github.com/cran/GDAtools
+* Date/Publication: 2021-05-31 09:40:08 UTC
+* Number of recursive dependencies: 128
+
+Run `revdep_details(, "GDAtools")` for more info
+
+</details>
+
+## In both
+
+*   checking installed package size ... NOTE
+    ```
+      installed size is  5.3Mb
+      sub-directories of 1Mb or more:
+        doc   4.7Mb
+    ```
+
 # GENESIS
 
 <details>
@@ -454,7 +608,7 @@ Run `revdep_details(, "fingerPro")` for more info
 * GitHub: https://github.com/UW-GAC/GENESIS
 * Source code: https://github.com/cran/GENESIS
 * Date/Publication: 2021-01-28
-* Number of recursive dependencies: 165
+* Number of recursive dependencies: 164
 
 Run `revdep_details(, "GENESIS")` for more info
 
@@ -493,7 +647,7 @@ Run `revdep_details(, "GENESIS")` for more info
 * GitHub: https://github.com/tengfei/ggbio
 * Source code: https://github.com/cran/ggbio
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 167
+* Number of recursive dependencies: 166
 
 Run `revdep_details(, "ggbio")` for more info
 
@@ -504,8 +658,8 @@ Run `revdep_details(, "ggbio")` for more info
 *   checking whether package ‘ggbio’ can be installed ... WARNING
     ```
     Found the following significant warnings:
-      Warning: package ‘BiocGenerics’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/ggbio/new/ggbio.Rcheck/00install.out’ for details.
+      Warning: package ‘BiocGenerics’ was built under R version 4.0.5
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/ggbio/new/ggbio.Rcheck/00install.out’ for details.
     ```
 
 *   checking dependencies in R code ... NOTE
@@ -544,6 +698,29 @@ Run `revdep_details(, "ggbio")` for more info
     to your NAMESPACE file.
     ```
 
+# GGMnonreg
+
+<details>
+
+* Version: 1.0.0
+* GitHub: NA
+* Source code: https://github.com/cran/GGMnonreg
+* Date/Publication: 2021-04-08 11:30:06 UTC
+* Number of recursive dependencies: 111
+
+Run `revdep_details(, "GGMnonreg")` for more info
+
+</details>
+
+## In both
+
+*   checking dependencies in R code ... NOTE
+    ```
+    Namespaces in Imports field not imported from:
+      ‘Matrix’ ‘Rdpack’
+      All declared Imports should be used.
+    ```
+
 # GGPA
 
 <details>
@@ -552,7 +729,7 @@ Run `revdep_details(, "ggbio")` for more info
 * GitHub: https://github.com/dongjunchung/GGPA
 * Source code: https://github.com/cran/GGPA
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 70
+* Number of recursive dependencies: 68
 
 Run `revdep_details(, "GGPA")` for more info
 
@@ -585,11 +762,11 @@ Run `revdep_details(, "GGPA")` for more info
 
 <details>
 
-* Version: 1.1.2
+* Version: 1.2.3
 * GitHub: https://github.com/ggPMXdevelopment/ggPMX
 * Source code: https://github.com/cran/ggPMX
-* Date/Publication: 2020-06-25 15:50:09 UTC
-* Number of recursive dependencies: 78
+* Date/Publication: 2021-05-29 16:50:05 UTC
+* Number of recursive dependencies: 110
 
 Run `revdep_details(, "ggPMX")` for more info
 
@@ -597,9 +774,13 @@ Run `revdep_details(, "ggPMX")` for more info
 
 ## In both
 
-*   checking package dependencies ... NOTE
+*   checking installed package size ... NOTE
     ```
-    Package suggested but not available for checking: ‘nlmixr’
+      installed size is  8.6Mb
+      sub-directories of 1Mb or more:
+        doc        1.1Mb
+        help       2.1Mb
+        testdata   4.8Mb
     ```
 
 # ggquickeda
@@ -610,7 +791,7 @@ Run `revdep_details(, "ggPMX")` for more info
 * GitHub: https://github.com/smouksassi/ggquickeda
 * Source code: https://github.com/cran/ggquickeda
 * Date/Publication: 2021-02-15 12:40:02 UTC
-* Number of recursive dependencies: 167
+* Number of recursive dependencies: 171
 
 Run `revdep_details(, "ggquickeda")` for more info
 
@@ -628,15 +809,36 @@ Run `revdep_details(, "ggquickeda")` for more info
       All declared Imports should be used.
     ```
 
+# greed
+
+<details>
+
+* Version: 0.5.1
+* GitHub: https://github.com/comeetie/greed
+* Source code: https://github.com/cran/greed
+* Date/Publication: 2021-05-10 06:50:03 UTC
+* Number of recursive dependencies: 129
+
+Run `revdep_details(, "greed")` for more info
+
+</details>
+
+## In both
+
+*   checking data for non-ASCII characters ... NOTE
+    ```
+      Note: found 6693 marked UTF-8 strings
+    ```
+
 # httk
 
 <details>
 
-* Version: 2.0.3
+* Version: 2.0.4
 * GitHub: https://github.com/USEPA/CompTox-ExpoCast-httk
 * Source code: https://github.com/cran/httk
-* Date/Publication: 2020-09-25 11:00:03 UTC
-* Number of recursive dependencies: 104
+* Date/Publication: 2021-05-10 07:50:08 UTC
+* Number of recursive dependencies: 118
 
 Run `revdep_details(, "httk")` for more info
 
@@ -646,10 +848,10 @@ Run `revdep_details(, "httk")` for more info
 
 *   checking installed package size ... NOTE
     ```
-      installed size is 12.7Mb
+      installed size is  8.1Mb
       sub-directories of 1Mb or more:
-        data   9.1Mb
-        doc    2.1Mb
+        data   5.0Mb
+        doc    1.5Mb
     ```
 
 # isomiRs
@@ -660,7 +862,7 @@ Run `revdep_details(, "httk")` for more info
 * GitHub: https://github.com/lpantano/isomiRs
 * Source code: https://github.com/cran/isomiRs
 * Date/Publication: 2021-01-29
-* Number of recursive dependencies: 162
+* Number of recursive dependencies: 160
 
 Run `revdep_details(, "isomiRs")` for more info
 
@@ -674,12 +876,12 @@ Run `revdep_details(, "isomiRs")` for more info
       Warning: package ‘SummarizedExperiment’ was built under R version 4.0.3
       Warning: package ‘MatrixGenerics’ was built under R version 4.0.3
       Warning: package ‘GenomicRanges’ was built under R version 4.0.3
-      Warning: package ‘BiocGenerics’ was built under R version 4.0.3
+      Warning: package ‘BiocGenerics’ was built under R version 4.0.5
       Warning: package ‘S4Vectors’ was built under R version 4.0.3
       Warning: package ‘IRanges’ was built under R version 4.0.3
-      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.3
+      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.5
       Warning: package ‘Biobase’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/isomiRs/new/isomiRs.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/isomiRs/new/isomiRs.Rcheck/00install.out’ for details.
     ```
 
 *   checking for hidden files and directories ... NOTE
@@ -724,7 +926,7 @@ Run `revdep_details(, "isomiRs")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/jmv
 * Date/Publication: 2020-06-26 10:00:09 UTC
-* Number of recursive dependencies: 189
+* Number of recursive dependencies: 186
 
 Run `revdep_details(, "jmv")` for more info
 
@@ -745,11 +947,11 @@ Run `revdep_details(, "jmv")` for more info
 
 <details>
 
-* Version: 1.1.6
+* Version: 1.1.7
 * GitHub: https://github.com/jinseob2kim/jsmodule
 * Source code: https://github.com/cran/jsmodule
-* Date/Publication: 2021-02-15 14:20:06 UTC
-* Number of recursive dependencies: 214
+* Date/Publication: 2021-03-14 00:20:02 UTC
+* Number of recursive dependencies: 213
 
 Run `revdep_details(, "jsmodule")` for more info
 
@@ -772,7 +974,7 @@ Run `revdep_details(, "jsmodule")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/LANDD
 * Date/Publication: 2016-10-01 01:14:24
-* Number of recursive dependencies: 107
+* Number of recursive dependencies: 108
 
 Run `revdep_details(, "LANDD")` for more info
 
@@ -797,11 +999,11 @@ Run `revdep_details(, "LANDD")` for more info
 
 <details>
 
-* Version: 1.0.1
+* Version: 1.2.1
 * GitHub: https://github.com/great-northern-diver/loon.ggplot
 * Source code: https://github.com/cran/loon.ggplot
-* Date/Publication: 2020-06-26 16:40:03 UTC
-* Number of recursive dependencies: 107
+* Date/Publication: 2021-06-10 12:50:06 UTC
+* Number of recursive dependencies: 88
 
 Run `revdep_details(, "loon.ggplot")` for more info
 
@@ -812,7 +1014,7 @@ Run `revdep_details(, "loon.ggplot")` for more info
 *   checking whether package ‘loon.ggplot’ can be installed ... ERROR
     ```
     Installation failed.
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/loon.ggplot/new/loon.ggplot.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/loon.ggplot/new/loon.ggplot.Rcheck/00install.out’ for details.
     ```
 
 ## Installation
@@ -836,7 +1038,7 @@ In addition: Warning message:
 In fun(libname, pkgname) : couldn't connect to display ""
 Execution halted
 ERROR: lazy loading failed for package ‘loon.ggplot’
-* removing ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/loon.ggplot/new/loon.ggplot.Rcheck/loon.ggplot’
+* removing ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/loon.ggplot/new/loon.ggplot.Rcheck/loon.ggplot’
 
 ```
 ### CRAN
@@ -858,18 +1060,18 @@ In addition: Warning message:
 In fun(libname, pkgname) : couldn't connect to display ""
 Execution halted
 ERROR: lazy loading failed for package ‘loon.ggplot’
-* removing ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/loon.ggplot/old/loon.ggplot.Rcheck/loon.ggplot’
+* removing ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/loon.ggplot/old/loon.ggplot.Rcheck/loon.ggplot’
 
 ```
 # MAINT.Data
 
 <details>
 
-* Version: 2.5.0
+* Version: 2.6.1
 * GitHub: NA
 * Source code: https://github.com/cran/MAINT.Data
-* Date/Publication: 2020-09-24 20:30:06 UTC
-* Number of recursive dependencies: 63
+* Date/Publication: 2021-05-04 13:00:02 UTC
+* Number of recursive dependencies: 77
 
 Run `revdep_details(, "MAINT.Data")` for more info
 
@@ -894,7 +1096,7 @@ Run `revdep_details(, "MAINT.Data")` for more info
 * GitHub: https://github.com/RGLab/MAST
 * Source code: https://github.com/cran/MAST
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 207
+* Number of recursive dependencies: 205
 
 Run `revdep_details(, "MAST")` for more info
 
@@ -909,12 +1111,12 @@ Run `revdep_details(, "MAST")` for more info
       Warning: package ‘SummarizedExperiment’ was built under R version 4.0.3
       Warning: package ‘MatrixGenerics’ was built under R version 4.0.3
       Warning: package ‘GenomicRanges’ was built under R version 4.0.3
-      Warning: package ‘BiocGenerics’ was built under R version 4.0.3
+      Warning: package ‘BiocGenerics’ was built under R version 4.0.5
       Warning: package ‘S4Vectors’ was built under R version 4.0.3
       Warning: package ‘IRanges’ was built under R version 4.0.3
-      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.3
+      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.5
       Warning: package ‘Biobase’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/MAST/new/MAST.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/MAST/new/MAST.Rcheck/00install.out’ for details.
     ```
 
 *   checking for hidden files and directories ... NOTE
@@ -941,7 +1143,7 @@ Run `revdep_details(, "MAST")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/MCbiclust
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 182
+* Number of recursive dependencies: 174
 
 Run `revdep_details(, "MCbiclust")` for more info
 
@@ -965,7 +1167,7 @@ Run `revdep_details(, "MCbiclust")` for more info
 * GitHub: https://github.com/mfasiolo/mgcViz
 * Source code: https://github.com/cran/mgcViz
 * Date/Publication: 2020-03-04 15:10:02 UTC
-* Number of recursive dependencies: 112
+* Number of recursive dependencies: 109
 
 Run `revdep_details(, "mgcViz")` for more info
 
@@ -988,7 +1190,7 @@ Run `revdep_details(, "mgcViz")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/MissingDataGUI
 * Date/Publication: 2016-04-25 08:58:53
-* Number of recursive dependencies: 93
+* Number of recursive dependencies: 91
 
 Run `revdep_details(, "MissingDataGUI")` for more info
 
@@ -999,7 +1201,7 @@ Run `revdep_details(, "MissingDataGUI")` for more info
 *   checking S3 generic/method consistency ... WARNING
     ```
     
-    (R:14605): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:85952): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     See section ‘Generic functions and methods’ in the ‘Writing R
     Extensions’ manual.
     ```
@@ -1007,7 +1209,7 @@ Run `revdep_details(, "MissingDataGUI")` for more info
 *   checking replacement functions ... WARNING
     ```
     
-    (R:14779): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:86126): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     The argument of a replacement function which corresponds to the right
     hand side must be named ‘value’.
     ```
@@ -1015,7 +1217,7 @@ Run `revdep_details(, "MissingDataGUI")` for more info
 *   checking for missing documentation entries ... WARNING
     ```
     
-    (R:15107): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:86447): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     All user-level objects in a package should have documentation entries.
     See chapter ‘Writing R documentation files’ in the ‘Writing R
     Extensions’ manual.
@@ -1024,23 +1226,23 @@ Run `revdep_details(, "MissingDataGUI")` for more info
 *   checking for code/documentation mismatches ... WARNING
     ```
     
-    (R:15132): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:86546): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     
-    (R:15259): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:86610): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     
-    (R:15357): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:86648): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     ```
 
 *   checking dependencies in R code ... NOTE
     ```
     
-    (R:14396): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:85878): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     ```
 
 *   checking foreign function calls ... NOTE
     ```
     
-    (R:14814): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:86151): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     See chapter ‘System and foreign language interfaces’ in the ‘Writing R
     Extensions’ manual.
     ```
@@ -1048,13 +1250,13 @@ Run `revdep_details(, "MissingDataGUI")` for more info
 *   checking R code for possible problems ... NOTE
     ```
     
-    (R:14905): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:86220): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     ```
 
 *   checking Rd \usage sections ... NOTE
     ```
     
-    (R:15405): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
+    (R:86679): Gtk-WARNING **: gtk_disable_setlocale() must be called before gtk_init()
     The \usage entries for S3 methods should use the \method markup and not
     their full name.
     See chapter ‘Writing R documentation files’ in the ‘Writing R
@@ -1102,7 +1304,7 @@ Run `revdep_details(, "MOFA")` for more info
     ```
     Found the following significant warnings:
       Warning: Please use MOFA2 instead of MOFA.  Package 'MOFA' is deprecated and
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/MOFA/new/MOFA.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/MOFA/new/MOFA.Rcheck/00install.out’ for details.
     ```
 
 *   checking package dependencies ... NOTE
@@ -1120,7 +1322,7 @@ Run `revdep_details(, "MOFA")` for more info
 
 *   checking installed package size ... NOTE
     ```
-      installed size is  5.3Mb
+      installed size is  5.4Mb
       sub-directories of 1Mb or more:
         doc   4.6Mb
     ```
@@ -1148,7 +1350,7 @@ Run `revdep_details(, "MOFA")` for more info
 * GitHub: https://github.com/bioFAM/MOFA2
 * Source code: https://github.com/cran/MOFA2
 * Date/Publication: 2020-11-03
-* Number of recursive dependencies: 223
+* Number of recursive dependencies: 222
 
 Run `revdep_details(, "MOFA2")` for more info
 
@@ -1156,6 +1358,28 @@ Run `revdep_details(, "MOFA2")` for more info
 
 ## In both
 
+*   checking tests ...
+    ```
+     ERROR
+    Running the tests in ‘tests/testthat.R’ failed.
+    Last 13 lines of output:
+      `p <- plot_data_overview(test_mofa2)` produced warnings.
+      ── Failure (test_plot.R:18:2): plot data scatter ───────────────────────────────
+      `p <- plot_data_scatter(test_mofa2, view = 1, factor = 1)` produced warnings.
+      ── Failure (test_plot.R:34:2): plot weights ────────────────────────────────────
+      `p <- plot_weights(test_mofa2, view = 1, factors = 1:2)` produced warnings.
+      ── Failure (test_plot.R:36:2): plot weights ────────────────────────────────────
+      `p <- plot_weights(test_mofa2, factors = 1)` produced warnings.
+      ── Failure (test_plot.R:48:2): plot factor values ──────────────────────────────
+      `p <- plot_factor(test_mofa2)` produced warnings.
+      ── Failure (test_plot.R:52:2): plot factor values ──────────────────────────────
+      `p <- plot_factors(test_mofa2, factors = 1:2)` produced warnings.
+      
+      [ FAIL 6 | WARN 4 | SKIP 0 | PASS 20 ]
+      Error: Test failures
+      Execution halted
+    ```
+
 *   checking for hidden files and directories ... NOTE
     ```
     Found the following hidden files and directories:
@@ -1168,7 +1392,7 @@ Run `revdep_details(, "MOFA2")` for more info
     ```
     Found the following notes/warnings:
       Non-staged installation was used
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/MOFA2/new/MOFA2.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/MOFA2/new/MOFA2.Rcheck/00install.out’ for details.
     ```
 
 *   checking installed package size ... NOTE
@@ -1230,7 +1454,7 @@ Run `revdep_details(, "MOFA2")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/nanny
 * Date/Publication: 2020-06-13 13:50:03 UTC
-* Number of recursive dependencies: 167
+* Number of recursive dependencies: 166
 
 Run `revdep_details(, "nanny")` for more info
 
@@ -1253,7 +1477,7 @@ Run `revdep_details(, "nanny")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/NetworkChange
 * Date/Publication: 2020-07-11 22:00:14 UTC
-* Number of recursive dependencies: 126
+* Number of recursive dependencies: 124
 
 Run `revdep_details(, "NetworkChange")` for more info
 
@@ -1275,7 +1499,7 @@ Run `revdep_details(, "NetworkChange")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/nzelect
 * Date/Publication: 2017-10-02 20:35:23 UTC
-* Number of recursive dependencies: 77
+* Number of recursive dependencies: 75
 
 Run `revdep_details(, "nzelect")` for more info
 
@@ -1299,11 +1523,11 @@ Run `revdep_details(, "nzelect")` for more info
 
 <details>
 
-* Version: 1.10.11
+* Version: 1.10.13
 * GitHub: https://github.com/Roleren/ORFik
 * Source code: https://github.com/cran/ORFik
-* Date/Publication: 2021-02-09
-* Number of recursive dependencies: 150
+* Date/Publication: 2021-03-26
+* Number of recursive dependencies: 149
 
 Run `revdep_details(, "ORFik")` for more info
 
@@ -1315,10 +1539,10 @@ Run `revdep_details(, "ORFik")` for more info
     ```
     Found the following significant warnings:
       Warning: package ‘IRanges’ was built under R version 4.0.3
-      Warning: package ‘BiocGenerics’ was built under R version 4.0.3
+      Warning: package ‘BiocGenerics’ was built under R version 4.0.5
       Warning: package ‘S4Vectors’ was built under R version 4.0.3
       Warning: package ‘GenomicRanges’ was built under R version 4.0.3
-      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.3
+      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.5
       Warning: package ‘GenomicAlignments’ was built under R version 4.0.3
       Warning: package ‘SummarizedExperiment’ was built under R version 4.0.3
       Warning: package ‘MatrixGenerics’ was built under R version 4.0.3
@@ -1326,12 +1550,12 @@ Run `revdep_details(, "ORFik")` for more info
       Warning: package ‘Biostrings’ was built under R version 4.0.3
       Warning: package ‘XVector’ was built under R version 4.0.3
       Warning: package ‘Rsamtools’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/ORFik/new/ORFik.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/ORFik/new/ORFik.Rcheck/00install.out’ for details.
     ```
 
 *   checking installed package size ... NOTE
     ```
-      installed size is  6.4Mb
+      installed size is  6.6Mb
       sub-directories of 1Mb or more:
         doc   3.9Mb
     ```
@@ -1382,7 +1606,7 @@ Run `revdep_details(, "ORFik")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/PAFway
 * Date/Publication: 2020-02-05 16:40:02 UTC
-* Number of recursive dependencies: 71
+* Number of recursive dependencies: 69
 
 Run `revdep_details(, "PAFway")` for more info
 
@@ -1397,34 +1621,6 @@ Run `revdep_details(, "PAFway")` for more info
       All declared Imports should be used.
     ```
 
-# PAsso
-
-<details>
-
-* Version: 0.1.8
-* GitHub: https://github.com/XiaoruiZhu/PAsso
-* Source code: https://github.com/cran/PAsso
-* Date/Publication: 2020-07-13 08:50:07 UTC
-* Number of recursive dependencies: 161
-
-Run `revdep_details(, "PAsso")` for more info
-
-</details>
-
-## In both
-
-*   checking dependencies in R code ... NOTE
-    ```
-    Namespaces in Imports field not imported from:
-      ‘doParallel’ ‘goftest’ ‘tidyverse’
-      All declared Imports should be used.
-    ```
-
-*   checking Rd cross-references ... NOTE
-    ```
-    Packages unavailable to check Rd xrefs: ‘sure’, ‘truncdist’
-    ```
-
 # Pi
 
 <details>
@@ -1433,7 +1629,7 @@ Run `revdep_details(, "PAsso")` for more info
 * GitHub: https://github.com/hfang-bristol/Pi
 * Source code: https://github.com/cran/Pi
 * Date/Publication: 2020-11-24
-* Number of recursive dependencies: 230
+* Number of recursive dependencies: 228
 
 Run `revdep_details(, "Pi")` for more info
 
@@ -1444,19 +1640,19 @@ Run `revdep_details(, "Pi")` for more info
 *   checking whether package ‘Pi’ can be installed ... WARNING
     ```
     Found the following significant warnings:
-      Warning: package ‘supraHex’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/Pi/new/Pi.Rcheck/00install.out’ for details.
+      Warning: package ‘supraHex’ was built under R version 4.0.5
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/Pi/new/Pi.Rcheck/00install.out’ for details.
     ```
 
 # plotly
 
 <details>
 
-* Version: 4.9.3
+* Version: 4.9.4.1
 * GitHub: https://github.com/ropensci/plotly
 * Source code: https://github.com/cran/plotly
-* Date/Publication: 2021-01-10 14:30:02 UTC
-* Number of recursive dependencies: 161
+* Date/Publication: 2021-06-18 09:00:02 UTC
+* Number of recursive dependencies: 154
 
 Run `revdep_details(, "plotly")` for more info
 
@@ -1466,7 +1662,7 @@ Run `revdep_details(, "plotly")` for more info
 
 *   checking installed package size ... NOTE
     ```
-      installed size is  6.8Mb
+      installed size is  6.6Mb
       sub-directories of 1Mb or more:
         htmlwidgets   3.8Mb
     ```
@@ -1479,7 +1675,7 @@ Run `revdep_details(, "plotly")` for more info
 * GitHub: https://github.com/green-striped-gecko/PopGenReport
 * Source code: https://github.com/cran/PopGenReport
 * Date/Publication: 2019-02-04 12:13:23 UTC
-* Number of recursive dependencies: 119
+* Number of recursive dependencies: 120
 
 Run `revdep_details(, "PopGenReport")` for more info
 
@@ -1500,7 +1696,7 @@ Run `revdep_details(, "PopGenReport")` for more info
 * GitHub: https://github.com/josie-athens/pubh
 * Source code: https://github.com/cran/pubh
 * Date/Publication: 2021-02-16 17:30:06 UTC
-* Number of recursive dependencies: 202
+* Number of recursive dependencies: 208
 
 Run `revdep_details(, "pubh")` for more info
 
@@ -1514,6 +1710,70 @@ Run `revdep_details(, "pubh")` for more info
       All declared Imports should be used.
     ```
 
+# randomForestExplainer
+
+<details>
+
+* Version: 0.10.1
+* GitHub: https://github.com/ModelOriented/randomForestExplainer
+* Source code: https://github.com/cran/randomForestExplainer
+* Date/Publication: 2020-07-11 20:30:02 UTC
+* Number of recursive dependencies: 84
+
+Run `revdep_details(, "randomForestExplainer")` for more info
+
+</details>
+
+## In both
+
+*   checking examples ... ERROR
+    ```
+    ...
+    337   97 Petal.Length             0
+    338   97  Petal.Width             2
+    339   97 Sepal.Length             1
+    340   97  Sepal.Width             2
+    341   98 Petal.Length             1
+    342   98  Petal.Width             0
+    343   98 Sepal.Length             2
+    344   98  Sepal.Width             4
+    345   99 Petal.Length             0
+    346   99  Petal.Width             3
+    347   99 Sepal.Length             1
+    348  100 Petal.Length             0
+    349  100  Petal.Width             1
+    350  100 Sepal.Length             2
+    351  100  Sepal.Width             3
+    > min_depth_distribution(ranger::ranger(Species ~ ., data = iris, num.trees = 100))
+    Warning in (function (n)  : internal error -3 in R_decompress1
+    Error in (function (n)  : 
+      lazy-load database '/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/library.noindex/randomForestExplainer/Matrix/R/Matrix.rdb' is corrupt
+    Calls: min_depth_distribution ... <Anonymous> -> .updateMethodsInTable -> <Anonymous>
+    Execution halted
+    ```
+
+*   checking tests ...
+    ```
+     ERROR
+    Running the tests in ‘tests/testthat.R’ failed.
+    Last 13 lines of output:
+      ══ Failed tests ════════════════════════════════════════════════════════════════
+      ── Error (test_ranger.R:1:1): (code run outside of `test_that()`) ──────────────
+      Error: package or namespace load failed for 'ranger' in (function (n) :
+       lazy-load database '/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/library.noindex/randomForestExplainer/Matrix/R/Matrix.rdb' is corrupt
+      Backtrace:
+          █
+       1. └─base::library(ranger) test_ranger.R:1:0
+       2.   └─base::tryCatch(...)
+       3.     └─base:::tryCatchList(expr, classes, parentenv, handlers)
+       4.       └─base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
+       5.         └─value[[3L]](cond)
+      
+      [ FAIL 1 | WARN 139 | SKIP 0 | PASS 31 ]
+      Error: Test failures
+      Execution halted
+    ```
+
 # robCompositions
 
 <details>
@@ -1522,12 +1782,24 @@ Run `revdep_details(, "pubh")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/robCompositions
 * Date/Publication: 2020-11-18 21:10:02 UTC
-* Number of recursive dependencies: 148
+* Number of recursive dependencies: 147
 
 Run `revdep_details(, "robCompositions")` for more info
 
 </details>
 
+## Newly fixed
+
+*   checking S3 generic/method consistency ... WARNING
+    ```
+    Error in get(fname, envir = envir, inherits = FALSE) : 
+      lazy-load database '/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/library.noindex/robCompositions/rrcov/R/rrcov.rdb' is corrupt
+    Calls: <Anonymous> -> unique -> .get_S3_generics_as_seen_from_package
+    Execution halted
+    See section ‘Generic functions and methods’ in the ‘Writing R
+    Extensions’ manual.
+    ```
+
 ## In both
 
 *   checking Rd cross-references ... NOTE
@@ -1539,11 +1811,11 @@ Run `revdep_details(, "robCompositions")` for more info
 
 <details>
 
-* Version: 0.93-7
+* Version: 0.93-8
 * GitHub: NA
 * Source code: https://github.com/cran/robustbase
-* Date/Publication: 2021-01-04 15:30:03 UTC
-* Number of recursive dependencies: 67
+* Date/Publication: 2021-06-02 10:20:02 UTC
+* Number of recursive dependencies: 66
 
 Run `revdep_details(, "robustbase")` for more info
 
@@ -1561,6 +1833,29 @@ Run `revdep_details(, "robustbase")` for more info
     Package unavailable to check Rd xrefs: ‘robustX’
     ```
 
+# rosetta
+
+<details>
+
+* Version: 0.3.6
+* GitHub: NA
+* Source code: https://github.com/cran/rosetta
+* Date/Publication: 2021-03-29 10:00:03 UTC
+* Number of recursive dependencies: 159
+
+Run `revdep_details(, "rosetta")` for more info
+
+</details>
+
+## In both
+
+*   checking dependencies in R code ... NOTE
+    ```
+    Namespaces in Imports field not imported from:
+      ‘diptest’ ‘methods’ ‘viridis’
+      All declared Imports should be used.
+    ```
+
 # rrr
 
 <details>
@@ -1569,7 +1864,7 @@ Run `revdep_details(, "robustbase")` for more info
 * GitHub: https://github.com/chrisaddy/rrr
 * Source code: https://github.com/cran/rrr
 * Date/Publication: 2016-12-09 15:15:55
-* Number of recursive dependencies: 89
+* Number of recursive dependencies: 87
 
 Run `revdep_details(, "rrr")` for more info
 
@@ -1591,7 +1886,7 @@ Run `revdep_details(, "rrr")` for more info
 * GitHub: https://github.com/LuyiTian/scPipe
 * Source code: https://github.com/cran/scPipe
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 149
+* Number of recursive dependencies: 148
 
 Run `revdep_details(, "scPipe")` for more info
 
@@ -1606,12 +1901,12 @@ Run `revdep_details(, "scPipe")` for more info
       Warning: package ‘SummarizedExperiment’ was built under R version 4.0.3
       Warning: package ‘MatrixGenerics’ was built under R version 4.0.3
       Warning: package ‘GenomicRanges’ was built under R version 4.0.3
-      Warning: package ‘BiocGenerics’ was built under R version 4.0.3
+      Warning: package ‘BiocGenerics’ was built under R version 4.0.5
       Warning: package ‘S4Vectors’ was built under R version 4.0.3
       Warning: package ‘IRanges’ was built under R version 4.0.3
-      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.3
+      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.5
       Warning: package ‘Biobase’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/scPipe/new/scPipe.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/scPipe/new/scPipe.Rcheck/00install.out’ for details.
     ```
 
 *   checking for hidden files and directories ... NOTE
@@ -1652,11 +1947,11 @@ Run `revdep_details(, "scPipe")` for more info
 
 <details>
 
-* Version: 1.1.5
+* Version: 1.1.6
 * GitHub: NA
 * Source code: https://github.com/cran/seer
-* Date/Publication: 2020-06-08 05:00:02 UTC
-* Number of recursive dependencies: 112
+* Date/Publication: 2021-06-01 04:50:02 UTC
+* Number of recursive dependencies: 110
 
 Run `revdep_details(, "seer")` for more info
 
@@ -1678,7 +1973,7 @@ Run `revdep_details(, "seer")` for more info
 * GitHub: https://github.com/Liubuntu/SeqSQC
 * Source code: https://github.com/cran/SeqSQC
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 141
+* Number of recursive dependencies: 140
 
 Run `revdep_details(, "SeqSQC")` for more info
 
@@ -1691,17 +1986,17 @@ Run `revdep_details(, "SeqSQC")` for more info
     ...
     Method: exacting biallelic SNPs
     Number of samples: 5
-    Parsing "/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/SeqSQC/new/SeqSQC.Rcheck/SeqSQC/extdata/example_sub.vcf" ...
+    Parsing "/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/SeqSQC/new/SeqSQC.Rcheck/SeqSQC/extdata/example_sub.vcf" ...
     	import 1000 variants.
     + genotype   { Bit2 5x1000, 1.2K } *
     SNP genotypes: 5 samples, 1000 SNPs
     Genotype matrix is being transposed ...
     Optimize the access efficiency ...
     Clean up the fragments of GDS file:
-        open the file '/var/folders/0k/bxg5lhr92sq74mb1d446ql540000gp/T//RtmpjeDD22/file1054219e79e09' (12.4K)
+        open the file '/var/folders/0k/bxg5lhr92sq74mb1d446ql540000gp/T//RtmppI5gy5/fileaa154757dbb4' (12.4K)
         # of fragments: 48
-        save to '/var/folders/0k/bxg5lhr92sq74mb1d446ql540000gp/T//RtmpjeDD22/file1054219e79e09.tmp'
-        rename '/var/folders/0k/bxg5lhr92sq74mb1d446ql540000gp/T//RtmpjeDD22/file1054219e79e09.tmp' (10.7K, reduced: 1.6K)
+        save to '/var/folders/0k/bxg5lhr92sq74mb1d446ql540000gp/T//RtmppI5gy5/fileaa154757dbb4.tmp'
+        rename '/var/folders/0k/bxg5lhr92sq74mb1d446ql540000gp/T//RtmppI5gy5/fileaa154757dbb4.tmp' (10.7K, reduced: 1.6K)
         # of fragments: 20
     Load study cohort annotation file ...
     Load 1kg data to temp directory...
@@ -1715,13 +2010,13 @@ Run `revdep_details(, "SeqSQC")` for more info
 *   checking whether package ‘SeqSQC’ can be installed ... WARNING
     ```
     Found the following significant warnings:
-      Warning: package ‘ExperimentHub’ was built under R version 4.0.3
-      Warning: package ‘BiocGenerics’ was built under R version 4.0.3
-      Warning: package ‘AnnotationHub’ was built under R version 4.0.3
+      Warning: package ‘ExperimentHub’ was built under R version 4.0.5
+      Warning: package ‘BiocGenerics’ was built under R version 4.0.5
+      Warning: package ‘AnnotationHub’ was built under R version 4.0.5
       Warning: package ‘BiocFileCache’ was built under R version 4.0.3
       Warning: package ‘SNPRelate’ was built under R version 4.0.3
       Warning: package ‘gdsfmt’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/SeqSQC/new/SeqSQC.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/SeqSQC/new/SeqSQC.Rcheck/00install.out’ for details.
     ```
 
 *   checking installed package size ... NOTE
@@ -1736,11 +2031,11 @@ Run `revdep_details(, "SeqSQC")` for more info
 
 <details>
 
-* Version: 0.3.6
+* Version: 0.3.8
 * GitHub: https://github.com/daya6489/SmartEDA
 * Source code: https://github.com/cran/SmartEDA
-* Date/Publication: 2020-07-10 10:20:17 UTC
-* Number of recursive dependencies: 124
+* Date/Publication: 2021-06-05 10:10:02 UTC
+* Number of recursive dependencies: 94
 
 Run `revdep_details(, "SmartEDA")` for more info
 
@@ -1748,20 +2043,26 @@ Run `revdep_details(, "SmartEDA")` for more info
 
 ## In both
 
+*   checking dependencies in R code ... NOTE
+    ```
+    Namespace in Imports field not imported from: ‘qpdf’
+      All declared Imports should be used.
+    ```
+
 *   checking Rd cross-references ... NOTE
     ```
-    Packages unavailable to check Rd xrefs: ‘InformationValue’, ‘DataExplorer’
+    Package unavailable to check Rd xrefs: ‘InformationValue’
     ```
 
 # specmine
 
 <details>
 
-* Version: 3.1.4
+* Version: 3.1.5
 * GitHub: https://github.com/BioSystemsUM/specmine
 * Source code: https://github.com/cran/specmine
-* Date/Publication: 2021-03-04 23:10:02 UTC
-* Number of recursive dependencies: 284
+* Date/Publication: 2021-05-16 14:10:02 UTC
+* Number of recursive dependencies: 286
 
 Run `revdep_details(, "specmine")` for more info
 
@@ -1790,11 +2091,11 @@ Run `revdep_details(, "specmine")` for more info
 
 <details>
 
-* Version: 0.2.7
+* Version: 0.2.8
 * GitHub: https://github.com/nspyrison/spinifex
 * Source code: https://github.com/cran/spinifex
-* Date/Publication: 2020-11-18 15:00:02 UTC
-* Number of recursive dependencies: 107
+* Date/Publication: 2021-04-18 14:50:02 UTC
+* Number of recursive dependencies: 138
 
 Run `revdep_details(, "spinifex")` for more info
 
@@ -1819,17 +2120,11 @@ Run `revdep_details(, "spinifex")` for more info
        7.         └─args$renderer(frames_vars$frame_source, args$fps)
        8.           └─magick::image_animate(anim, fps, loop = if (loop) 0 else 1)
       
-      [ FAIL 2 | WARN 12 | SKIP 0 | PASS 53 ]
+      [ FAIL 2 | WARN 0 | SKIP 0 | PASS 50 ]
       Error: Test failures
       Execution halted
     ```
 
-*   checking dependencies in R code ... NOTE
-    ```
-    Namespace in Imports field not imported from: ‘RColorBrewer’
-      All declared Imports should be used.
-    ```
-
 # spup
 
 <details>
@@ -1838,7 +2133,7 @@ Run `revdep_details(, "spinifex")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/spup
 * Date/Publication: 2020-04-30 22:20:06 UTC
-* Number of recursive dependencies: 85
+* Number of recursive dependencies: 83
 
 Run `revdep_details(, "spup")` for more info
 
@@ -1860,7 +2155,7 @@ Run `revdep_details(, "spup")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/statVisual
 * Date/Publication: 2020-02-20 19:30:02 UTC
-* Number of recursive dependencies: 165
+* Number of recursive dependencies: 172
 
 Run `revdep_details(, "statVisual")` for more info
 
@@ -1872,8 +2167,8 @@ Run `revdep_details(, "statVisual")` for more info
     ```
     Found the following significant warnings:
       Warning: package ‘Biobase’ was built under R version 4.0.3
-      Warning: package ‘BiocGenerics’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/statVisual/new/statVisual.Rcheck/00install.out’ for details.
+      Warning: package ‘BiocGenerics’ was built under R version 4.0.5
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/statVisual/new/statVisual.Rcheck/00install.out’ for details.
     ```
 
 *   checking dependencies in R code ... NOTE
@@ -1887,11 +2182,11 @@ Run `revdep_details(, "statVisual")` for more info
 
 <details>
 
-* Version: 1.2.0
+* Version: 1.2.1
 * GitHub: NA
 * Source code: https://github.com/cran/tidybulk
-* Date/Publication: 2020-10-27
-* Number of recursive dependencies: 269
+* Date/Publication: 2021-04-06
+* Number of recursive dependencies: 271
 
 Run `revdep_details(, "tidybulk")` for more info
 
@@ -1903,10 +2198,10 @@ Run `revdep_details(, "tidybulk")` for more info
     ```
     Warning: package ‘DESeq2’ was built under R version 4.0.3
     Warning: package ‘S4Vectors’ was built under R version 4.0.3
-    Warning: package ‘BiocGenerics’ was built under R version 4.0.3
+    Warning: package ‘BiocGenerics’ was built under R version 4.0.5
     Warning: package ‘IRanges’ was built under R version 4.0.3
     Warning: package ‘GenomicRanges’ was built under R version 4.0.3
-    Warning: package ‘GenomeInfoDb’ was built under R version 4.0.3
+    Warning: package ‘GenomeInfoDb’ was built under R version 4.0.5
     Warning: package ‘SummarizedExperiment’ was built under R version 4.0.3
     Warning: package ‘MatrixGenerics’ was built under R version 4.0.3
     Warning: package ‘Biobase’ was built under R version 4.0.3
@@ -1961,7 +2256,7 @@ Run `revdep_details(, "tidybulk")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/tidySingleCellExperiment
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 205
+* Number of recursive dependencies: 204
 
 Run `revdep_details(, "tidySingleCellExperiment")` for more info
 
@@ -1976,12 +2271,12 @@ Run `revdep_details(, "tidySingleCellExperiment")` for more info
       Warning: package ‘SummarizedExperiment’ was built under R version 4.0.3
       Warning: package ‘MatrixGenerics’ was built under R version 4.0.3
       Warning: package ‘GenomicRanges’ was built under R version 4.0.3
-      Warning: package ‘BiocGenerics’ was built under R version 4.0.3
+      Warning: package ‘BiocGenerics’ was built under R version 4.0.5
       Warning: package ‘S4Vectors’ was built under R version 4.0.3
       Warning: package ‘IRanges’ was built under R version 4.0.3
-      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.3
+      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.5
       Warning: package ‘Biobase’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/tidySingleCellExperiment/new/tidySingleCellExperiment.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/tidySingleCellExperiment/new/tidySingleCellExperiment.Rcheck/00install.out’ for details.
     ```
 
 *   checking DESCRIPTION meta-information ... NOTE
@@ -2023,7 +2318,7 @@ Run `revdep_details(, "tidySingleCellExperiment")` for more info
 * GitHub: NA
 * Source code: https://github.com/cran/TNBC.CMS
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 151
+* Number of recursive dependencies: 150
 
 Run `revdep_details(, "TNBC.CMS")` for more info
 
@@ -2037,12 +2332,12 @@ Run `revdep_details(, "TNBC.CMS")` for more info
       Warning: package ‘SummarizedExperiment’ was built under R version 4.0.3
       Warning: package ‘MatrixGenerics’ was built under R version 4.0.3
       Warning: package ‘GenomicRanges’ was built under R version 4.0.3
-      Warning: package ‘BiocGenerics’ was built under R version 4.0.3
+      Warning: package ‘BiocGenerics’ was built under R version 4.0.5
       Warning: package ‘S4Vectors’ was built under R version 4.0.3
       Warning: package ‘IRanges’ was built under R version 4.0.3
-      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.3
+      Warning: package ‘GenomeInfoDb’ was built under R version 4.0.5
       Warning: package ‘Biobase’ was built under R version 4.0.3
-    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally/revdep/checks.noindex/TNBC.CMS/new/TNBC.CMS.Rcheck/00install.out’ for details.
+    See ‘/Users/barret/odrive/AmazonCloudDrive/git/R/ggobi_org/ggally/ggally.nosync/revdep/checks.noindex/TNBC.CMS/new/TNBC.CMS.Rcheck/00install.out’ for details.
     ```
 
 # TVTB
@@ -2053,7 +2348,7 @@ Run `revdep_details(, "TNBC.CMS")` for more info
 * GitHub: https://github.com/kevinrue/TVTB
 * Source code: https://github.com/cran/TVTB
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 172
+* Number of recursive dependencies: 171
 
 Run `revdep_details(, "TVTB")` for more info
 
@@ -2073,11 +2368,11 @@ Run `revdep_details(, "TVTB")` for more info
 
 <details>
 
-* Version: 1.0.3
+* Version: 1.0.5
 * GitHub: https://github.com/john-harrold/ubiquity
 * Source code: https://github.com/cran/ubiquity
-* Date/Publication: 2020-09-13 16:40:02 UTC
-* Number of recursive dependencies: 117
+* Date/Publication: 2021-04-25 18:50:03 UTC
+* Number of recursive dependencies: 114
 
 Run `revdep_details(, "ubiquity")` for more info
 
@@ -2087,10 +2382,45 @@ Run `revdep_details(, "ubiquity")` for more info
 
 *   checking installed package size ... NOTE
     ```
-      installed size is  9.6Mb
+      installed size is  9.9Mb
       sub-directories of 1Mb or more:
-        doc     6.5Mb
-        ubinc   2.1Mb
+        doc     6.6Mb
+        ubinc   2.2Mb
+    ```
+
+# ufs
+
+<details>
+
+* Version: 0.4.3
+* GitHub: NA
+* Source code: https://github.com/cran/ufs
+* Date/Publication: 2021-02-02 00:10:02 UTC
+* Number of recursive dependencies: 149
+
+Run `revdep_details(, "ufs")` for more info
+
+</details>
+
+## In both
+
+*   checking examples ... ERROR
+    ```
+    Running examples in ‘ufs-Ex.R’ failed
+    The error most likely occurred in:
+    
+    > ### Name: ggSave
+    > ### Title: Save a ggplot with specific defaults
+    > ### Aliases: ggSave
+    > 
+    > ### ** Examples
+    > 
+    > plot <- ufs::ggBoxplot(mtcars, 'mpg');
+    > ggSave(file=tempfile(fileext=".png"), plot=plot);
+    Error in png_dev(..., res = dpi, units = "in") : 
+      unused argument (type = "cairo-png")
+    Calls: ggSave -> <Anonymous> -> dev
+    Execution halted
     ```
 
 # vidger
@@ -2101,7 +2431,7 @@ Run `revdep_details(, "ubiquity")` for more info
 * GitHub: https://github.com/btmonier/vidger
 * Source code: https://github.com/cran/vidger
 * Date/Publication: 2020-10-27
-* Number of recursive dependencies: 126
+* Number of recursive dependencies: 124
 
 Run `revdep_details(, "vidger")` for more info
 
@@ -2117,3 +2447,26 @@ Run `revdep_details(, "vidger")` for more info
         doc    6.1Mb
     ```
 
+# vivid
+
+<details>
+
+* Version: 0.1.0
+* GitHub: NA
+* Source code: https://github.com/cran/vivid
+* Date/Publication: 2021-04-09 09:10:02 UTC
+* Number of recursive dependencies: 205
+
+Run `revdep_details(, "vivid")` for more info
+
+</details>
+
+## In both
+
+*   checking dependencies in R code ... NOTE
+    ```
+    Namespaces in Imports field not imported from:
+      ‘RColorBrewer’ ‘colorspace’ ‘tidyr’
+      All declared Imports should be used.
+    ```
+
diff --git a/tests/testthat/test-ggnet.R b/tests/testthat/test-ggnet.R
index f0fe4bd74..98249174d 100644
--- a/tests/testthat/test-ggnet.R
+++ b/tests/testthat/test-ggnet.R
@@ -201,15 +201,15 @@ test_that("examples", {
 
   # weighted adjacency matrix
   bip <- data.frame(
-    event1 = c(1, 2, 1, 0),
-    event2 = c(0, 0, 3, 0),
-    event3 = c(1, 1, 0, 4),
-    row.names = letters[1:4]
+    event1 = c(1, 2, 1),
+    event2 = c(0, 0, 3),
+    event3 = c(1, 1, 0),
+    row.names = letters[1:3]
   )
 
   # weighted bipartite network
   bip <- network(
-    bip[-4,], # remove "loop"
+    bip,
     matrix.type = "bipartite",
     ignore.eval = FALSE
     # names.eval = "weights"
diff --git a/tests/testthat/test-ggnet2.R b/tests/testthat/test-ggnet2.R
index 9daf9528f..49d87954c 100644
--- a/tests/testthat/test-ggnet2.R
+++ b/tests/testthat/test-ggnet2.R
@@ -235,15 +235,15 @@ test_that("examples", {
 
   # weighted adjacency matrix
   bip <- data.frame(
-    event1 = c(1, 2, 1, 0),
-    event2 = c(0, 0, 3, 0),
-    event3 = c(1, 1, 0, 4),
-    row.names = letters[1:4]
+    event1 = c(1, 2, 1),
+    event2 = c(0, 0, 3),
+    event3 = c(1, 1, 0),
+    row.names = letters[1:3]
   )
 
   # weighted bipartite network
   bip <- network(
-    bip[-4, ], # remove loop
+    bip,
     matrix.type = "bipartite",
     ignore.eval = FALSE,
     # names.eval = "weights"
diff --git a/tests/testthat/test-ggnetworkmap.R b/tests/testthat/test-ggnetworkmap.R
index 4a290b3af..1c26f938b 100644
--- a/tests/testthat/test-ggnetworkmap.R
+++ b/tests/testthat/test-ggnetworkmap.R
@@ -24,17 +24,14 @@ airports <- read.csv(test_path("data/airports.csv"), header = TRUE)
 rownames(airports) <- airports$iata
 
 # select some random flights
-set.seed(1234)
+set.seed(123)
 flights <- data.frame(
   origin = sample(airports[200:400, ]$iata, 200, replace = TRUE),
   destination = sample(airports[200:400, ]$iata, 200, replace = TRUE)
 )
 
 # convert to network
-flights <- network(
-  flights[-114,], # remove loop
-  directed = TRUE
-)
+flights <- network(flights, directed = TRUE)
 
 # add geographic coordinates
 flights %v% "lat" <- airports[ network.vertex.names(flights), "lat" ] # nolint
diff --git a/vignettes/ggnetworkmap.Rmd b/vignettes/ggnetworkmap.Rmd
index 368ca5102..e40cb6dcf 100644
--- a/vignettes/ggnetworkmap.Rmd
+++ b/vignettes/ggnetworkmap.Rmd
@@ -40,7 +40,7 @@ airports <- read.csv("http://datasets.flowingdata.com/tuts/maparcs/airports.csv"
 rownames(airports) <- airports$iata
 
 # select some random flights
-set.seed(1234)
+set.seed(123)
 flights <- data.frame(
   origin = sample(airports[200:400, ]$iata, 200, replace = TRUE),
   destination = sample(airports[200:400, ]$iata, 200, replace = TRUE)