diff --git a/cran-comments.md b/cran-comments.md index 573962556..8c59d0664 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,86 +1,115 @@ -## Test environments and R CMD check results -I did update from knitr::knit to installing rmarkdown and using knitr::rmarkdown as per request of knitr. This has increased my vignette file sizes. +## Comments + +I know my vignettes are getting larger. Any idea on how to reduce the pdf size, even though they are visualization vignettes? Otherwise, if it's not a big deal, I'll keep them as is. + +All three environments have the same NOTE on package size. Linux has a NOTE on mis-spelled words, it is a false positive. + +All downstream authors were not contacted as the update is minor. Only in contact with authors who requested minor update. +Thank you for your time, +Barret -* local OS X install (x86_64-apple-darwin13.4.0), R 3.2.3 + +## Test environments and R CMD check results + +* local OS X install (x86_64-apple-darwin13.4.0), R 3.3.0 * There were no ERRORs or WARNINGs. * There is one NOTE. * checking installed package size ... NOTE - installed size is 7.6Mb + installed size is 10.5Mb sub-directories of 1Mb or more: - doc 6.8Mb - -* ubuntu 12.04 (on travis-ci, x86_64-pc-linux-gnu), R 3.2.3 - * There were no ERRORs, WARNINGs. - * There are two NOTEs. The libcurl NOTE is a false positive. - * checking CRAN incoming feasibility ... NOTE - Maintainer: ‘Barret Schloerke ’ - Checking URLs requires 'libcurl' support in the R build + doc 9.7Mb +* ubuntu 12.04 (on travis-ci, x86_64-pc-linux-gnu), R 3.3.0 + * There were no ERRORs or WARNINGs. + * There is one NOTE * checking installed package size ... NOTE - installed size is 7.5Mb - sub-directories of 1Mb or more: - doc 6.7Mb - + installed size is 9.3Mb + sub-directories of 1Mb or more: + doc 7.9Mb * win-builder (devel and release) - * There were no ERRORs, WARNINGs. + * There were no ERRORs or WARNINGs. * There are two NOTEs. * checking installed package size ... NOTE - installed size is 7.6Mb - sub-directories of 1Mb or more: - doc 6.8Mb + installed size is 10.5Mb + sub-directories of 1Mb or more: + doc 9.7Mb * checking CRAN incoming feasibility ... NOTE - Possibly mis-spelled words in DESCRIPTION: - geoms (24:40) - ggplot (5:21, 23:45) - scatterplot (25:49) - - * a couple examples take more than five seconds. But it is not user time. - ** running examples for arch 'i386' ... [43s] OK - Examples with CPU or elapsed time > 5s - user system elapsed - ggnetworkmap 3.79 0.36 5.89 - ggcorr 1.24 0.08 6.10 - ** running examples for arch 'x64' ... [41s] OK - Examples with CPU or elapsed time > 5s - user system elapsed - ggnetworkmap 3.7 0.41 5.77 - - -## Downstream dependencies -I have run R CMD check on downstream dependencies of GGally on my local machine. -* Summary - https://github.com/ggobi/ggally/blob/master/revdep/summary.md -* Check result folders - https://github.com/ggobi/ggally/blob/master/revdep/ + Maintainer: 'Barret Schloerke ' -All downstream authors were not contacted as the update is minor. Only in contact with authors who requested minor update. + Possibly mis-spelled words in DESCRIPTION: + geoms (25:40) + ggplot (5:21) + scatterplot (26:49) -* Non-GGally error - * freqparcoord (1.0.0) - Maintainer: Norm Matloff - * missing package 'mgcv' is not related to the GGally package - * userfriendlyscience (0.3-0) - Maintainer: Gjalt-Jorn Peters - * ggplot2 error. ggplot2::geom_dotplot doesn't know what size is. +## Reverse dependencies +I have run R CMD check on downstream dependencies of GGally on my local machine. +* Summary - https://github.com/ggobi/ggally/blob/master/revdep/README.md + +### Quick RevDep Table +Checked DescribeDisplay : 0 errors | 0 warnings | 0 notes +Checked eechidna : 0 errors | 0 warnings | 0 notes +Checked freqparcoord : 0 errors | 0 warnings | 0 notes +Checked ggbio : 1 error | 2 warnings | 6 notes +Checked ggmcmc : 0 errors | 0 warnings | 0 notes +Checked imageData : 0 errors | 0 warnings | 0 notes +Checked isomiRs : 1 error | 0 warnings | 0 notes +Checked LANDD : 0 errors | 0 warnings | 0 notes +Checked MissingDataGUI : 1 error | 0 warnings | 0 notes +Checked ParamHelpers : 1 error | 0 warnings | 0 notes +Checked plotly : 0 errors | 0 warnings | 0 notes +Checked PopGenReport : 0 errors | 0 warnings | 0 notes +Checked qualvar : 0 errors | 0 warnings | 0 notes +Checked robCompositions : 0 errors | 0 warnings | 0 notes +Checked robustbase : 0 errors | 0 warnings | 0 notes +Checked specmine : 1 error | 0 warnings | 0 notes +Checked svdvis : 0 errors | 0 warnings | 0 notes +Checked TCGAbiolinks : 1 error | 0 warnings | 0 notes +Checked toaster : 0 errors | 0 warnings | 0 notes +Checked userfriendlyscience: 1 error | 0 warnings | 0 notes +Checked vdmR : 0 errors | 0 warnings | 0 notes +* Failed to install dependencies for: isomiRs +* Failed to install: MissingDataGUI, specmine, TCGAbiolinks, userfriendlyscience +* ggbio: checking examples ... ERROR +* ParamHelpers: checking tests ... ERROR + + +### RevDep Notes +* Can install, but non-GGally error + * ggbio (1.20.1) - Maintainer: Michael Lawrence + * Can install, but there are all sorts of issues in the check that are not related to GGally * Can not install - * DescribeDisplay (0.2.4) - Maintainer: Di Cook - * ggplot2 error on install - * LANDD (1.0.0) - Maintainer: Shangzhao Qiu - * Packages required but not available: ‘GOstats’ ‘GOSemSim’ + * isomiRs (1.0.2) - Maintainer: Lorena Pantano + * Packages required but not available: ‘DiscriMiner’ ‘DESeq2’ * MissingDataGUI (0.2-2) - Maintainer: Xiaoyue Cheng * difficulty installing RGtk2. Can't find any solutions for El Capitan / my computer + * ParamHelpers (1.7) - Maintainer: Bernd Bischl + * failed unit tests. Not related to GGally * specmine (1.0) - Maintainer: Christopher Costa - * Packages required but not available: ‘xcms’ ‘MAIT’ ‘genefilter’ ‘impute’ + * Trouble installing some BioConductor deps + * TCGAbiolinks (1.2.4) - Maintainer: Antonio Colaprico , + Tiago Chedraoui Silva + * Trouble installing some BioConductor deps + * userfriendlyscience (0.4-1) - Maintainer: Gjalt-Jorn Peters + * Can't figure out why it will not install * No error (Works!) - * ggmcmc (0.7.3) - Maintainer: Xavier Fernández i Marín - * ParamHelpers (1.6) - Maintainer: Bernd Bischl - * PopGenReport (2.2) - Maintainer: Bernd Gruber + * DescribeDisplay (0.2.5) - Maintainer: Di Cook + * eechidna (0.1) - Maintainer: Ben Marwick + * freqparcoord (1.0.1) - Maintainer: Norm Matloff + * ggmcmc (1.0) - Maintainer: Xavier Fernández i Marín + * imageData (0.1-21) - Maintainer: Chris Brien + * LANDD (1.0.0) - Maintainer: Shangzhao Qiu + * plotly (3.6.0) - Maintainer: Carson Sievert + * PopGenReport (2.2.2) - Maintainer: Bernd Gruber * qualvar (0.1.0) - Maintainer: Joel Gombin - * robCompositions (1.9.1) - Maintainer: Matthias Templ - * robustbase (0.92-5) - Maintainer: Martin Maechler + * robCompositions (2.0.0) - Maintainer: Matthias Templ + * robustbase (0.92-6) - Maintainer: Martin Maechler * svdvis (0.1) - Maintainer: Neo Christopher Chung - * toaster (0.4.1) - Maintainer: Gregory Kanevsky - * vdmR (0.2.0) - Maintainer: Tomokazu Fujino + * toaster (0.5.1) - Maintainer: Gregory Kanevsky + * vdmR (0.2.2) - Maintainer: Tomokazu Fujino