./bwa.2.1.py
optional arguments:
-h, --help show this help message and exit
-v, --version show program's version number and exit
-i FILE list of input bam_files (e.g: normal_bam tumor_bam)
-o DIR output dir or output file [$HOME]
Clustered arguments:
--qsub run in cluster [False]
--nodes STR name of nodes (e.g: n1,n2,...)
BWA
Folders and files
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