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BWA

./bwa.2.1.py
optional arguments:
  -h, --help     show this help message and exit
  -v, --version  show program's version number and exit
  -i FILE        list of input bam_files (e.g: normal_bam tumor_bam)
  -o DIR         output dir or output file [$HOME]
Clustered arguments:
  --qsub         run in cluster [False]
  --nodes STR    name of nodes (e.g: n1,n2,...)