Update dockerhub alphafold3 image

[UberClifford]

Hi,
I am trying to run AlphaFold3 using apptainer, since Docker is not allowed on the compute system I am working on. However, I am encountering the following error when running the container:

**ImportError: cannot import name 'model' from 'alphafold3.model' (unknown location)** 
```bash

When running my bash script:
```bash
#! /bin/bash
export AF3_RESOURCES_DIR=/home/local/alphafold3_resources
export AF3_IMAGE=${AF3_RESOURCES_DIR}/image/alphafold3.sif
export AF3_CODE_DIR=${AF3_RESOURCES_DIR}/code
export AF3_INPUT_DIR=${AF3_RESOURCES_DIR}/examples/2PV7
export AF3_OUTPUT_DIR=${AF3_RESOURCES_DIR}/examples/fold_protein_2PV7/output
export AF3_MODEL_PARAMETERS_DIR=${AF3_RESOURCES_DIR}/weights
export AF3_DATABASES_DIR=${AF3_RESOURCES_DIR}/databases

apptainer exec \
     --nv \
     --bind $AF3_INPUT_DIR:/root/af_input \
     --bind $AF3_OUTPUT_DIR:/root/af_output \
     --bind $AF3_MODEL_PARAMETERS_DIR:/root/models \
     --bind $AF3_DATABASES_DIR:/root/public_databases \
     $AF3_IMAGE \
     python ${AF3_RESOURCES_DIR}/alphafold3/run_alphafold.py \
     --json_path=/root/af_input/alphafold_input.json \
     --model_dir=/root/models \
     --db_dir=/root/public_databases \
     --output_dir=/root/af_output

This error is also found in other issue sections, and I believe the container is just outdated as stated in these sections.

I am installing from the image found on docker hub.

apptainer pull ./image/alphafold3.sif docker://cford38/alphafold3

Is there any chance that this image is outdated and needs to be updated?

[Augustin-Zidek]

Please refer to #361, the comment #361 (comment) has very good advice.

[Augustin-Zidek]

Moreover, we don't publish Dockerhub images, these are likely provided by your HPC environment -- so please ask your HPC administrators to update the image.

[UberClifford]

Hi, thank you for the quick response. I was able to make an updated container that works. My bad, I thought it was an official Dockerhub image.

[Augustin-Zidek]

No worries! Glad you were able to solve the issue! :)