HDF5 unexpectedly fails

[rasoolfa]

When I run the following simple code, the hdf5 throws some errors [when i> 5600].

require 'torch'
require 'hdf5'
local chunked_h5_file = hdf5.open('test.h5', 'w')
local ii_data = torch.Tensor()
local dtype= 'torch.FloatTensor'
for i = 1,  10000 do
    chunked_h5_file:write('vi'..tostring(i),ii_data:resize(10,10):zero():type(dtype))  
end

Here is the error message:

HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 140328551929728:
  #000: ../../../src/H5D.c line 170 in H5Dcreate2(): unable to create dataset
    major: Dataset
    minor: Unable to initialize object
  #001: ../../../src/H5Dint.c line 439 in H5D__create_named(): unable to create and link to dataset
    major: Dataset
    minor: Unable to initialize object
  #002: ../../../src/H5L.c line 1638 in H5L_link_object(): unable to create new link to object
    major: Links
    minor: Unable to initialize object
  #003: ../../../src/H5L.c line 1882 in H5L_create_real(): can't insert link
    major: Symbol table
    minor: Unable to insert object
  #004: ../../../src/H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #005: ../../../src/H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
    major: Symbol table
    minor: Callback failed
  #006: ../../../src/H5L.c line 1685 in H5L_link_cb(): unable to create object
    major: Object header
    minor: Unable to initialize object
  #007: ../../../src/H5O.c line 3015 in H5O_obj_create(): unable to open object
    major: Object header
    minor: Can't open object
  #008: ../../../src/H5Doh.c line 293 in H5O__dset_create(): unable to create dataset
    major: Dataset
    minor: Unable to initialize object
  #009: ../../../src/H5Dint.c line 1048 in H5D__create(): can't update the metadata cache
    major: Dataset
    minor: Unable to initialize object
  #010: ../../../src/H5Dint.c line 802 in H5D__update_oh_info(): unable to create dataset object header
    major: Dataset
    minor: Unable to initialize object
  #011: ../../../src/H5O.c line 1257 in H5O_create(): unable to cache object header
    major: Object header
    minor: Unable to insert object
  #012: ../../../src/H5AC.c line 986 in H5AC_insert_entry(): H5C_insert_entry() failed
    major: Object cache
    minor: Unable to insert metadata into cache
  #013: ../../../src/H5C.c line 2699 in H5C_insert_entry(): H5C_make_space_in_cache failed.
    major: Object cache
    minor: Unable to insert metadata into cache
  #014: ../../../src/H5C.c line 8223 in H5C_make_space_in_cache(): unable to flush entry
    major: Object cache
    minor: Unable to flush data from cache
  #015: ../../../src/H5C.c line 7749 in H5C_flush_single_entry(): unable to flush entry
    major: Object cache
    minor: Unable to flush data from cache
  #016: ../../../src/H5Ocache.c line 487 in H5O_flush(): unable to write object header chunk to disk
    major: Object header
    minor: Write failed
  #017: ../../../src/H5Fio.c line 158 in H5F_block_write(): write through metadata accumulator failed
    major: Low-level I/O
    minor: Write failed
  #018: ../../../src/H5Faccum.c line 640 in H5F_accum_write(): file write failed
    major: Low-level I/O
    minor: Write failed
  #019: ../../../src/H5FDint.c line 185 in H5FD_write(): driver write request failed
    major: Virtual File Layer
    minor: Write failed
  #020: ../../../src/H5FDsec2.c line 822 in H5FD_sec2_write(): file write failed: time = Wed Jul 20 05:29:00 2016
, filename = '/hdfs/test.h5', file descriptor = 3, errno = 5, error message = 'Input/output error', buf = 0x44211a8, total write size = 144, bytes this sub-write = 144, bytes actually written = 18446744073709551615, offset = 274432
    major: Low-level I/O
    minor: Write failed
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 140328551929728:
  #000: ../../../src/H5Dio.c line 234 in H5Dwrite(): can't prepare for writing data
    major: Dataset
    minor: Write failed
  #001: ../../../src/H5Dio.c line 266 in H5D__pre_write(): not a dataset
    major: Invalid arguments to routine
    minor: Inappropriate type
../pkg/torch/install/bin/luajit: ../pkg/torch/install/share/lua/5.1/hdf5/group.lua:115: Error writing data vi5686 to [HDF5Group 33554432 /]
stack traceback:
    [C]: in function 'error'
    .../pkg/torch/install/share/lua/5.1/hdf5/group.lua:115: in function '_writeData'
    .../pkg/torch/install/share/lua/5.1/hdf5/group.lua:292: in function '_write_or_append'
    .../pkg/torch/install/share/lua/5.1/hdf5/group.lua:255: in function </pkg/torch/install/share/lua/5.1/hdf5/group.lua:254>
    ...g/pkg/torch/install/share/lua/5.1/hdf5/file.lua:69: in function '_write_or_append'
    ...g/pkg/torch/install/share/lua/5.1/hdf5/file.lua:43: in function 'write'
    check_hd5.lua:9: in main chunk
    [C]: in function 'dofile'
    .../pkg/torch/install/lib/luarocks/rocks/trepl/scm-1/bin/th:145: in main chunk
    [C]: at 0x00406670
Segmentation fault (core dumped)

I have run this codes on different machines, it fails only on one machine. I installed fresh Ubuntu 14.04. Don't know what is the problem. I tried to update different libraries and packages but no luck.

Any help would be appreciated.