environment.yml

name: core_acc
channels:
- conda-forge
- r
- bioconda
dependencies:
- r::r=3.6.0
- r::r-flashClust=1.01-2
- r::r-stringi
- bioconda::blast
- bioconda::r-wgcna=1.69
- bioconda::sra-tools=2.10.9
- bioconda::salmon=0.11.2
- conda-forge::python=3.7
- conda-forge::notebook
- conda-forge::pandas=1.1.0
- conda-forge::seaborn=0.11.1
- conda-forge::scipy=1.1.0
- conda-forge::numpy=1.19.5
- conda-forge::plotnine=0.5.1
- conda-forge::scikit-learn
- conda-forge::umap-learn=0.4.2
- conda-forge::numba=0.50.1
- conda-forge::ipykernel=5.1.1
- conda-forge::nb_conda_kernels
- conda-forge::gxx_linux-64
- conda-forge::clang_osx-64
- conda-forge::libiconv=1.15
- conda-forge::biopython
- conda-forge::python-igraph=0.7.1
- pip=19.2.1
- pip:
  - matplotlib==3.0.0
  - matplotlib-venn
  - black==20.8b1
  - flake8==3.8.4
  - pre_commit==2.9.3
  - jupytext==1.9.1
  - rpy2 == 3.0.1
  - hdbscan == 0.8.27
  - fastcluster == 1.1.28
  - tzlocal == 2.1
  - svgutils==0.3.1