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.gitignore
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.DS_Store
.huskyrc.json
out
log.log
**/node_modules
*.pyc
*.vsix
envVars.txt
**/.vscode/.ropeproject/**
**/testFiles/**/.cache/**
*.noseids
.nyc_output
.vscode-test
__pycache__
npm-debug.log
**/.mypy_cache/**
!yarn.lock
coverage/
cucumber-report.json
**/.vscode-test/**
**/.vscode test/**
**/.vscode-smoke/**
**/.venv*/
port.txt
precommit.hook
pythonFiles/lib/**
pythonFiles/get-pip.py
debug_coverage*/**
languageServer/**
languageServer.*/**
bin/**
obj/**
.pytest_cache
tmp/**
.python-version
.vs/
test-results*.xml
xunit-test-results.xml
build/ci/performance/performance-results.json
!build/
debug*.log
debugpy*.log
pydevd*.log
nodeLanguageServer/**
nodeLanguageServer.*/**
dist/**
# translation files
*.xlf
package.nls.*.json
l10n/
# and repo specific
evaluation_experiments/EXP4_cibersort_eval.ipynb
evaluation_experiments/EXP4_bayesprism_eval.ipynb
functions/MCT_residual.R
preprocessing/EXP4_bayesprism_prep.ipynb
preprocessing/EXP4_cibersortprep.ipynb
results/EXP1/EXP1_eval_snadp_5CTnonoise.html
results/EXP1/EXP1_eval_snadp_5CTnonoise.ipynb
results/EXP2/EXP2_NNLS_eval_pbmc_nonoise.ipynb
results/EXP2/EXP2_NNLS_pbmc_predicted.txt
results/EXP2/EXP2_NNLS_pbmc_real.txt
results/EXP2/EXP2_bayesprism_eval_pbmc_nonoise.ipynb
results/EXP2/EXP2_bayesprism_pbmc_predicted.txt
results/EXP2/EXP2_bayesprism_pbmc_real.txt
results/EXP2/EXP2_cibersort_eval_pbmc_nonoise.ipynb
results/EXP2/EXP2_cibersortx_pbmc_predicted.txt
results/EXP2/EXP2_cibersortx_pbmc_real.txt
results/EXP2/selected_cells/EXP2_NNLS_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_NNLS_pbmc_real.txt
results/EXP2/selected_cells/EXP2_bayesprism_eval.ipynb
results/EXP2/selected_cells/EXP2_bayesprism_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_bayesprism_pbmc_real.txt
results/EXP2/selected_cells/EXP2_cibersortx_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_cibersortx_pbmc_real.txt
esults/EXP2/EXP2_NNLS_pbmc_predicted.txt
results/EXP2/EXP2_NNLS_pbmc_real.txt
results/EXP2/EXP2_bayesprism_eval_pbmc_nonoise.ipynb
results/EXP2/EXP2_bayesprism_pbmc_predicted.txt
results/EXP2/EXP2_bayesprism_pbmc_real.txt
results/EXP2/EXP2_cibersort_eval_pbmc_nonoise.ipynb
results/EXP2/EXP2_cibersortx_pbmc_predicted.txt
results/EXP2/EXP2_cibersortx_pbmc_real.txt
results/EXP2/selected_cells/EXP2_NNLS_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_NNLS_pbmc_real.txt
results/EXP2/selected_cells/EXP2_bayesprism_eval.ipynb
results/EXP2/selected_cells/EXP2_bayesprism_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_bayesprism_pbmc_real.txt
results/EXP2/selected_cells/EXP2_cibersortx_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_cibersortx_pbmc_real.txt
results/EXP2/selected_cells/EXP2_NNLS_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_NNLS_pbmc_real.txt
results/EXP2/selected_cells/EXP2_bayesprism_eval.ipynb
results/EXP2/selected_cells/EXP2_bayesprism_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_bayesprism_pbmc_real.txt
results/EXP2/selected_cells/EXP2_cibersortx_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_cibersortx_pbmc_real.txt
results/EXP1/EXP1_eval_snadp_5CTnonoise.html
results/EXP1/EXP1_eval_snadp_5CTnonoise.ipynb
results/EXP2/EXP2_NNLS_eval_pbmc_nonoise.ipynb
evaluation_experiments/EXP4_cibersort_eval.ipynb
evaluation_experiments/EXP4_bayesprism_eval.ipynb
functions/MCT_residual.R
preprocessing/EXP4_bayesprism_prep.ipynb
preprocessing/EXP4_cibersortprep.ipynb
results/EXP1/EXP1_eval_snadp_5CTnonoise.html
results/EXP1/EXP1_eval_snadp_5CTnonoise.ipynb
results/EXP2/EXP2_NNLS_eval_pbmc_nonoise.ipynb
results/EXP2/EXP2_NNLS_pbmc_predicted.txt
results/EXP2/EXP2_NNLS_pbmc_real.txt
results/EXP2/EXP2_bayesprism_eval_pbmc_nonoise.ipynb
results/EXP2/EXP2_bayesprism_pbmc_predicted.txt
results/EXP2/EXP2_bayesprism_pbmc_real.txt
results/EXP2/EXP2_cibersort_eval_pbmc_nonoise.ipynb
results/EXP2/EXP2_cibersortx_pbmc_predicted.txt
results/EXP2/EXP2_cibersortx_pbmc_real.txt
results/EXP2/selected_cells/EXP2_NNLS_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_NNLS_pbmc_real.txt
results/EXP2/selected_cells/EXP2_bayesprism_eval.ipynb
results/EXP2/selected_cells/EXP2_bayesprism_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_bayesprism_pbmc_real.txt
results/EXP2/selected_cells/EXP2_cibersortx_pbmc_predicted.txt
results/EXP2/selected_cells/EXP2_cibersortx_pbmc_real.txt